Wall clock time and date at job start Tue Mar 31 2020 05:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00009 * 2 1 4 4 H 1.48505 * 109.47309 * 270.00033 * 3 2 1 5 5 H 1.48500 * 109.46999 * 30.00141 * 3 2 1 6 6 H 1.48500 * 109.46968 * 150.00097 * 3 2 1 7 7 C 1.37877 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99825 * 0.02562 * 7 2 1 9 9 C 1.50704 * 120.00086 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47016 * 180.02562 * 9 7 2 11 11 C 1.53040 * 109.45846 * 175.00465 * 10 9 7 12 12 C 1.53191 * 109.31369 * 181.38883 * 11 10 9 13 13 N 1.46925 * 108.77151 * 305.36293 * 12 11 10 14 14 C 1.34781 * 120.63187 * 233.58177 * 13 12 11 15 15 O 1.21586 * 119.99633 * 5.22734 * 14 13 12 16 16 N 1.34767 * 119.99998 * 185.22227 * 14 13 12 17 17 C 1.46501 * 119.99933 * 175.01697 * 16 14 13 18 18 C 1.53003 * 109.47544 * 180.02562 * 17 16 14 19 19 C 1.50692 * 109.47518 * 180.02562 * 18 17 16 20 20 O 1.20835 * 119.99725 * 0.02562 * 19 18 17 21 21 O 1.34229 * 120.00355 * 180.02562 * 19 18 17 22 22 C 1.46932 * 118.74086 * 53.86339 * 13 12 11 23 23 C 1.53037 * 109.45956 * 295.07064 * 10 9 7 24 24 H 0.96997 * 119.99681 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.46557 * 60.00253 * 9 7 2 26 26 H 1.08995 * 109.47111 * 300.00196 * 9 7 2 27 27 H 1.08995 * 109.45804 * 55.03086 * 10 9 7 28 28 H 1.08996 * 109.49815 * 61.43257 * 11 10 9 29 29 H 1.09005 * 109.51942 * 301.35414 * 11 10 9 30 30 H 1.08995 * 109.58701 * 185.57874 * 12 11 10 31 31 H 1.08998 * 109.70598 * 65.21590 * 12 11 10 32 32 H 0.96998 * 120.00443 * 355.02040 * 16 14 13 33 33 H 1.09004 * 109.47286 * 60.00125 * 17 16 14 34 34 H 1.08999 * 109.47213 * 300.00318 * 17 16 14 35 35 H 1.08999 * 109.47031 * 300.00315 * 18 17 16 36 36 H 1.09004 * 109.46820 * 59.99725 * 18 17 16 37 37 H 0.96697 * 116.99909 * 180.02562 * 21 19 18 38 38 H 1.08997 * 109.58552 * 65.92294 * 22 13 12 39 39 H 1.09000 * 109.58974 * 186.35109 * 22 13 12 40 40 H 1.08996 * 109.49998 * 298.56821 * 23 10 9 41 41 H 1.09008 * 109.49692 * 58.63446 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5116 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0023 11 6 5.5467 -2.6381 -0.1285 12 6 6.0507 -4.0843 -0.1643 13 7 5.5425 -4.7915 1.0191 14 6 6.3857 -5.4426 1.8447 15 8 7.5865 -5.3699 1.6681 16 7 5.8978 -6.1742 2.8660 17 6 6.8056 -6.9694 3.6966 18 6 6.0026 -7.6989 4.7755 19 6 6.9364 -8.5163 5.6303 20 8 8.1227 -8.5151 5.4005 21 8 6.4504 -9.2457 6.6469 22 6 4.0969 -4.7807 1.2819 23 6 3.6155 -3.3220 1.3044 24 1 -0.4849 0.8400 -0.0004 25 1 3.8751 -0.6805 0.8889 26 1 3.8745 -0.6801 -0.8911 27 1 3.5869 -3.1747 -0.8446 28 1 5.9830 -2.1217 0.7265 29 1 5.8366 -2.1289 -1.0477 30 1 7.1406 -4.0917 -0.1543 31 1 5.6902 -4.5769 -1.0672 32 1 4.9457 -6.1744 3.0510 33 1 7.5357 -6.3120 4.1688 34 1 7.3230 -7.6989 3.0736 35 1 5.4848 -6.9696 5.3985 36 1 5.2727 -8.3563 4.3029 37 1 7.0882 -9.7533 7.1672 38 1 3.5783 -5.3275 0.4944 39 1 3.8973 -5.2478 2.2463 40 1 4.0700 -2.7992 2.1459 41 1 2.5303 -3.2993 1.4052 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568261892.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:48 Heat of formation + Delta-G solvation = -158.120991 kcal Electronic energy + Delta-G solvation = -22325.315167 eV Core-core repulsion = 18817.646743 eV Total energy + Delta-G solvation = -3507.668423 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.56478 -41.14183 -38.91782 -37.23592 -36.32351 -35.66368 -34.09257 -32.50128 -31.49324 -30.14598 -26.61900 -25.38173 -24.17040 -23.13305 -22.10758 -21.42494 -20.51553 -19.16908 -19.06869 -18.73047 -17.70474 -17.39874 -16.87900 -16.56816 -16.32892 -15.55468 -15.36492 -15.16961 -15.09320 -14.86319 -14.47189 -14.16324 -14.14405 -14.06060 -13.48190 -13.04720 -12.97056 -12.83422 -12.66472 -12.50335 -12.39371 -12.13588 -11.96732 -11.75324 -11.70185 -11.38478 -11.27696 -11.02493 -10.88953 -10.69293 -10.28096 -9.44628 -8.23796 -6.24546 1.19939 1.36439 1.38955 1.48228 1.49380 2.10194 2.23209 2.39043 2.99466 3.12305 3.55658 3.94169 4.01337 4.02559 4.07634 4.23555 4.33505 4.43931 4.54125 4.58529 4.67386 4.78213 4.81075 4.86012 4.92842 4.97116 5.12411 5.21217 5.26481 5.38046 5.40481 5.44159 5.62502 5.63334 5.76678 5.77071 5.98774 6.36649 6.83013 6.93624 6.98300 7.39429 7.52721 8.92204 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.026957 B = 0.003006 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.458196 B = 9311.631474 C = 9872.669822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.005 3.995 3 Si 0.939 3.061 4 H -0.271 1.271 5 H -0.288 1.288 6 H -0.252 1.252 7 C -0.512 4.512 8 H 0.046 0.954 9 C -0.009 4.009 10 C -0.069 4.069 11 C -0.123 4.123 12 C 0.133 3.867 13 N -0.623 5.623 14 C 0.703 3.297 15 O -0.637 6.637 16 N -0.733 5.733 17 C 0.151 3.849 18 C -0.117 4.117 19 C 0.491 3.509 20 O -0.557 6.557 21 O -0.510 6.510 22 C 0.118 3.882 23 C -0.116 4.116 24 H 0.263 0.737 25 H 0.010 0.990 26 H 0.012 0.988 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.413 0.587 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.140 0.860 36 H 0.144 0.856 37 H 0.429 0.571 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.051 0.949 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.093 -17.477 10.087 22.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.191 4.191 3 Si 0.764 3.236 4 H -0.196 1.196 5 H -0.214 1.214 6 H -0.176 1.176 7 C -0.550 4.550 8 H 0.064 0.936 9 C -0.046 4.046 10 C -0.088 4.088 11 C -0.162 4.162 12 C 0.010 3.990 13 N -0.360 5.360 14 C 0.405 3.595 15 O -0.518 6.518 16 N -0.393 5.393 17 C 0.027 3.973 18 C -0.154 4.154 19 C 0.335 3.665 20 O -0.448 6.448 21 O -0.323 6.323 22 C -0.005 4.005 23 C -0.154 4.154 24 H 0.072 0.928 25 H 0.029 0.971 26 H 0.031 0.969 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.253 0.747 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.158 0.842 36 H 0.162 0.838 37 H 0.291 0.709 38 H 0.101 0.899 39 H 0.120 0.880 40 H 0.070 0.930 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.842 -17.127 9.686 22.466 hybrid contribution -0.019 0.836 0.316 0.894 sum 10.823 -16.291 10.002 21.968 Atomic orbital electron populations 1.70047 1.08004 1.27750 1.53444 1.25886 0.95445 1.02968 0.94848 0.85821 0.79481 0.79405 0.78883 1.19593 1.21446 1.17629 1.21461 0.91663 0.93117 1.48766 0.93582 1.19598 0.94259 0.94899 0.95863 1.20910 0.93912 0.96164 0.97778 1.21960 0.95681 0.96236 1.02283 1.21472 0.99630 0.91358 0.86500 1.47379 1.07357 1.54358 1.26856 1.15958 0.84539 0.78973 0.80071 1.90880 1.15289 1.69567 1.76108 1.44976 1.11869 1.50093 1.32361 1.20769 0.91494 0.93710 0.91375 1.21429 0.97733 1.00237 0.96048 1.23348 0.87530 0.76877 0.78783 1.90789 1.20011 1.63680 1.70303 1.84479 1.46794 1.58401 1.42675 1.21911 0.78793 0.96905 1.02848 1.21871 1.01260 0.94948 0.97352 0.92800 0.97125 0.96918 0.91956 0.93025 0.90167 0.90229 0.90176 0.74704 0.92840 0.92319 0.84232 0.83792 0.70852 0.89886 0.87956 0.93014 0.91273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.98 13.96 21.45 0.30 -57.68 16 2 C 0.00 0.28 5.47 84.65 0.46 0.74 16 3 Si 0.94 43.80 27.47 68.60 1.88 45.68 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 5 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 6 H -0.25 -11.11 6.54 99.48 0.65 -10.46 16 7 C -0.51 -27.65 8.94 25.60 0.23 -27.42 16 8 H 0.05 2.67 7.30 -2.91 -0.02 2.65 16 9 C -0.01 -0.39 3.52 29.85 0.10 -0.28 16 10 C -0.07 -2.40 2.10 -10.77 -0.02 -2.43 16 11 C -0.12 -3.66 5.36 30.67 0.16 -3.50 16 12 C 0.13 3.58 6.44 86.36 0.56 4.14 16 13 N -0.62 -16.13 2.97 -836.06 -2.48 -18.61 16 14 C 0.70 19.70 8.30 179.06 1.49 21.19 16 15 O -0.64 -23.45 15.77 -3.99 -0.06 -23.51 16 16 N -0.73 -13.82 5.46 -478.53 -2.62 -16.44 16 17 C 0.15 2.73 4.97 86.38 0.43 3.16 16 18 C -0.12 -1.03 5.93 29.85 0.18 -0.85 16 19 C 0.49 6.59 8.33 71.23 0.59 7.18 16 20 O -0.56 -12.54 16.74 21.94 0.37 -12.18 16 21 O -0.51 -4.16 13.42 -51.40 -0.69 -4.85 16 22 C 0.12 2.60 6.42 86.51 0.56 3.15 16 23 C -0.12 -3.58 5.21 30.82 0.16 -3.42 16 24 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 25 H 0.01 0.47 7.20 -2.39 -0.02 0.46 16 26 H 0.01 0.55 7.57 -2.39 -0.02 0.54 16 27 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.08 2.22 8.14 -2.38 -0.02 2.21 16 30 H 0.08 2.31 6.99 -2.39 -0.02 2.29 16 31 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.41 4.99 5.96 -92.71 -0.55 4.43 16 33 H 0.05 1.23 8.10 -2.38 -0.02 1.21 16 34 H 0.06 1.27 8.10 -2.39 -0.02 1.25 16 35 H 0.14 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.14 0.50 8.14 -2.38 -0.02 0.48 16 37 H 0.43 0.40 9.10 -74.06 -0.67 -0.28 16 38 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.10 1.54 5.64 -2.39 -0.01 1.53 16 40 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.07 2.43 6.91 -2.38 -0.02 2.41 16 Total: -1.00 -78.77 333.83 1.37 -77.41 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -0.23 Total: 8.51 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: 4.90 Total: 1.66 kcal Atomic # 7 Polarization: -87.92 SS G_CDS: -4.80 Total: -92.72 kcal Atomic # 8 Polarization: -40.15 SS G_CDS: -0.39 Total: -40.53 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.88 Total: 45.68 kcal Total: -78.77 1.37 -77.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568261892.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.715 kcal (2) G-P(sol) polarization free energy of solvation -78.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds