Wall clock time and date at job start Tue Mar 31 2020 05:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 119.99765 * 2 1 4 4 H 1.48500 * 109.47403 * 240.00263 * 3 2 1 5 5 H 1.48507 * 109.47487 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46854 * 120.00384 * 3 2 1 7 7 C 1.37870 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00214 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00390 * 359.97438 * 7 2 1 10 10 H 1.08998 * 110.05533 * 59.95712 * 9 7 2 11 11 C 1.53876 * 110.03013 * 298.54810 * 9 7 2 12 12 C 1.54267 * 106.59870 * 240.71414 * 11 9 7 13 13 C 1.54891 * 104.19324 * 336.39035 * 12 11 9 14 14 H 1.09005 * 110.75269 * 279.62515 * 13 12 11 15 15 N 1.46503 * 110.91324 * 156.33331 * 13 12 11 16 16 C 1.34776 * 120.00157 * 91.57823 * 15 13 12 17 17 O 1.21592 * 119.99936 * 359.97438 * 16 15 13 18 18 N 1.34780 * 119.99816 * 179.97438 * 16 15 13 19 19 C 1.46498 * 119.99672 * 179.97438 * 18 16 15 20 20 C 1.53000 * 109.46995 * 179.97438 * 19 18 16 21 21 C 1.52995 * 109.47375 * 180.02562 * 20 19 18 22 22 C 1.50694 * 109.47362 * 179.97438 * 21 20 19 23 23 O 1.20824 * 120.00392 * 0.02562 * 22 21 20 24 24 O 1.34236 * 120.00389 * 179.97438 * 22 21 20 25 25 C 1.54261 * 110.03593 * 181.37895 * 9 7 2 26 26 H 0.97003 * 120.00313 * 359.97438 * 1 2 3 27 27 H 1.08995 * 110.03160 * 359.97438 * 11 9 7 28 28 H 1.08998 * 110.03319 * 121.42692 * 11 9 7 29 29 H 1.09004 * 110.48597 * 95.06674 * 12 11 9 30 30 H 1.08994 * 110.48679 * 217.71200 * 12 11 9 31 31 H 0.97005 * 119.99752 * 271.57166 * 15 13 12 32 32 H 0.96998 * 119.99693 * 0.02562 * 18 16 15 33 33 H 1.08996 * 109.47516 * 300.00375 * 19 18 16 34 34 H 1.09000 * 109.47255 * 60.00654 * 19 18 16 35 35 H 1.09006 * 109.47171 * 300.00528 * 20 19 18 36 36 H 1.08999 * 109.47081 * 60.00404 * 20 19 18 37 37 H 1.08996 * 109.47205 * 300.00429 * 21 20 19 38 38 H 1.08999 * 109.46807 * 60.00088 * 21 20 19 39 39 H 0.96699 * 117.00295 * 180.02562 * 24 22 21 40 40 H 1.09000 * 110.48928 * 261.57113 * 25 9 7 41 41 H 1.08999 * 110.48469 * 24.21522 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6199 -2.5664 -0.8866 11 6 0.3897 -2.6105 1.2697 12 6 0.8870 -3.8563 2.0315 13 6 1.5493 -4.7309 0.9381 14 1 0.7963 -5.2861 0.3789 15 7 2.5352 -5.6427 1.5238 16 6 2.1645 -6.8807 1.9061 17 8 1.0116 -7.2408 1.7654 18 7 3.0716 -7.7197 2.4445 19 6 2.6685 -9.0653 2.8606 20 6 3.8785 -9.8058 3.4336 21 6 3.4577 -11.2113 3.8676 22 6 4.6496 -11.9409 4.4314 23 8 5.7252 -11.3929 4.4815 24 8 4.5162 -13.1994 4.8790 25 6 2.2416 -3.6812 0.0337 26 1 -0.4851 0.8400 0.0004 27 1 0.5170 -1.7208 1.8863 28 1 -0.6594 -2.7318 1.0000 29 1 1.6182 -3.5737 2.7889 30 1 0.0494 -4.3845 2.4870 31 1 3.4549 -5.3553 1.6363 32 1 3.9911 -7.4323 2.5571 33 1 1.8922 -8.9928 3.6223 34 1 2.2829 -9.6116 1.9998 35 1 4.6545 -9.8783 2.6715 36 1 4.2645 -9.2598 4.2944 37 1 2.6816 -11.1392 4.6295 38 1 3.0719 -11.7571 3.0066 39 1 5.3088 -13.6262 5.2321 40 1 2.3926 -4.0817 -0.9688 41 1 3.1916 -3.3703 0.4684 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573916971.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:05 Heat of formation + Delta-G solvation = -149.004355 kcal Electronic energy + Delta-G solvation = -21632.913076 eV Core-core repulsion = 18125.639979 eV Total energy + Delta-G solvation = -3507.273096 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.70969 -39.82619 -37.36978 -36.71837 -35.68873 -33.70602 -32.94475 -31.77209 -28.18338 -27.92091 -26.48409 -23.85344 -23.02265 -21.35315 -20.76787 -19.92976 -19.01895 -18.57617 -17.91611 -17.13002 -16.83675 -16.41547 -15.73106 -15.58076 -14.77556 -14.64029 -14.38305 -14.20491 -13.94336 -13.50699 -12.94304 -12.73847 -12.46719 -12.36853 -11.98944 -11.89114 -11.72078 -11.39762 -11.09894 -11.05882 -10.88654 -10.76070 -10.53625 -10.36005 -9.96729 -9.87032 -9.61848 -9.24972 -9.12914 -8.68067 -8.44154 -8.30940 -5.98467 -4.02172 1.74275 2.46519 2.96089 3.32430 3.37750 3.39486 3.43612 4.23504 4.44800 4.45684 4.51528 4.55604 4.98239 5.06322 5.09658 5.32445 5.35171 5.57800 5.68573 5.72491 5.77648 5.91034 6.03732 6.39263 6.42061 6.46102 6.54591 6.68412 6.77182 6.95679 7.02078 7.08568 7.36797 7.39742 7.41493 7.74758 7.94453 8.01145 8.23146 8.47856 8.82951 9.00706 9.61382 11.10578 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.045096 B = 0.002316 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.751678 B =12086.569979 C =12450.529177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.060 3.940 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.047 3.953 10 H 0.029 0.971 11 C -0.090 4.090 12 C -0.133 4.133 13 C 0.152 3.848 14 H 0.088 0.912 15 N -0.733 5.733 16 C 0.701 3.299 17 O -0.594 6.594 18 N -0.753 5.753 19 C 0.141 3.859 20 C -0.123 4.123 21 C -0.111 4.111 22 C 0.479 3.521 23 O -0.516 6.516 24 O -0.519 6.519 25 C -0.118 4.118 26 H 0.260 0.740 27 H 0.065 0.935 28 H 0.040 0.960 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.393 0.607 32 H 0.395 0.605 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.411 0.589 40 H 0.049 0.951 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.360 -22.378 8.458 25.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.142 4.142 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.551 4.551 8 H 0.072 0.928 9 C 0.028 3.972 10 H 0.047 0.953 11 C -0.129 4.129 12 C -0.172 4.172 13 C 0.047 3.953 14 H 0.106 0.894 15 N -0.386 5.386 16 C 0.401 3.599 17 O -0.472 6.472 18 N -0.410 5.410 19 C 0.016 3.984 20 C -0.161 4.161 21 C -0.149 4.149 22 C 0.322 3.678 23 O -0.404 6.404 24 O -0.331 6.331 25 C -0.156 4.156 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.226 0.774 32 H 0.229 0.771 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.270 0.730 40 H 0.068 0.932 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.042 -22.232 8.164 24.708 hybrid contribution 1.890 0.926 0.446 2.152 sum 8.932 -21.306 8.610 24.655 Atomic orbital electron populations 1.69976 1.05828 1.26547 1.50244 1.24987 0.94850 0.98996 0.95319 0.86713 0.79616 0.83436 0.78516 1.20359 1.21382 1.20371 1.21179 0.92612 0.90437 1.50911 0.92780 1.19198 0.92299 0.91367 0.94296 0.95293 1.22017 0.98171 0.94620 0.98078 1.22796 0.99207 0.97532 0.97666 1.22105 0.90084 0.88669 0.94394 0.89430 1.45359 1.13601 1.12949 1.66658 1.16005 0.84708 0.80835 0.78325 1.90908 1.17776 1.76794 1.61772 1.45065 1.12393 1.14929 1.68640 1.21051 0.95930 0.81777 0.99661 1.21629 0.98403 0.93453 1.02596 1.21240 0.94790 0.95436 1.03399 1.23519 0.90583 0.79557 0.74181 1.90750 1.29440 1.67535 1.52640 1.84540 1.45078 1.29253 1.74216 1.22758 0.99995 0.95841 0.97047 0.93013 0.91624 0.94147 0.92664 0.93233 0.77379 0.77101 0.91429 0.91449 0.90178 0.90162 0.87006 0.87024 0.73024 0.93176 0.92095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.44 12.33 55.43 0.68 -24.75 16 2 C 0.06 1.65 5.07 -17.82 -0.09 1.56 16 3 Si 0.89 21.09 29.54 -169.99 -5.02 16.06 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 7 C -0.51 -13.76 8.34 -34.44 -0.29 -14.05 16 8 H 0.05 1.42 7.55 -52.49 -0.40 1.02 16 9 C 0.05 1.16 2.84 -90.65 -0.26 0.90 16 10 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 11 C -0.09 -2.12 5.56 -25.61 -0.14 -2.26 16 12 C -0.13 -2.64 6.52 -25.07 -0.16 -2.81 16 13 C 0.15 2.80 3.26 -65.94 -0.21 2.58 16 14 H 0.09 1.76 7.55 -51.93 -0.39 1.36 16 15 N -0.73 -11.02 5.19 -56.72 -0.29 -11.32 16 16 C 0.70 10.84 8.57 -86.92 -0.74 10.10 16 17 O -0.59 -11.67 15.99 5.28 0.08 -11.59 16 18 N -0.75 -8.10 5.56 -65.23 -0.36 -8.46 16 19 C 0.14 1.23 5.67 -4.04 -0.02 1.21 16 20 C -0.12 -0.78 4.62 -26.73 -0.12 -0.90 16 21 C -0.11 -0.54 5.81 -27.89 -0.16 -0.70 16 22 C 0.48 3.26 8.33 36.00 0.30 3.56 16 23 O -0.52 -5.28 16.74 -18.75 -0.31 -5.60 16 24 O -0.52 -2.56 13.42 -39.27 -0.53 -3.09 16 25 C -0.12 -2.34 5.97 -25.08 -0.15 -2.49 16 26 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.06 1.69 7.17 -51.93 -0.37 1.32 16 28 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.39 4.81 8.58 -40.82 -0.35 4.46 16 32 H 0.40 3.21 8.49 -40.82 -0.35 2.87 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 36 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 37 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.11 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.41 0.48 9.10 45.56 0.41 0.89 16 40 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.06 1.16 7.56 -51.93 -0.39 0.77 16 LS Contribution 344.44 15.07 5.19 5.19 Total: -1.00 -34.56 344.44 -8.24 -42.79 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -5.62 Total: 4.06 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -2.06 Total: -3.30 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: 0.03 Total: -44.53 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.76 Total: -20.27 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.56 -8.24 -42.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573916971.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.210 kcal (2) G-P(sol) polarization free energy of solvation -34.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds