Wall clock time and date at job start Tue Mar 31 2020 05:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 119.99765 * 2 1 4 4 H 1.48500 * 109.47403 * 240.00263 * 3 2 1 5 5 H 1.48507 * 109.47487 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46854 * 120.00384 * 3 2 1 7 7 C 1.37870 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00214 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00390 * 359.97438 * 7 2 1 10 10 H 1.08998 * 110.05533 * 59.95712 * 9 7 2 11 11 C 1.53876 * 110.03013 * 298.54810 * 9 7 2 12 12 C 1.54267 * 106.59870 * 240.71414 * 11 9 7 13 13 C 1.54891 * 104.19324 * 336.39035 * 12 11 9 14 14 H 1.09005 * 110.75269 * 279.62515 * 13 12 11 15 15 N 1.46503 * 110.91324 * 156.33331 * 13 12 11 16 16 C 1.34776 * 120.00157 * 91.57823 * 15 13 12 17 17 O 1.21592 * 119.99936 * 359.97438 * 16 15 13 18 18 N 1.34780 * 119.99816 * 179.97438 * 16 15 13 19 19 C 1.46498 * 119.99672 * 179.97438 * 18 16 15 20 20 C 1.53000 * 109.46995 * 179.97438 * 19 18 16 21 21 C 1.52995 * 109.47375 * 180.02562 * 20 19 18 22 22 C 1.50694 * 109.47362 * 179.97438 * 21 20 19 23 23 O 1.20824 * 120.00392 * 0.02562 * 22 21 20 24 24 O 1.34236 * 120.00389 * 179.97438 * 22 21 20 25 25 C 1.54261 * 110.03593 * 181.37895 * 9 7 2 26 26 H 0.97003 * 120.00313 * 359.97438 * 1 2 3 27 27 H 1.08995 * 110.03160 * 359.97438 * 11 9 7 28 28 H 1.08998 * 110.03319 * 121.42692 * 11 9 7 29 29 H 1.09004 * 110.48597 * 95.06674 * 12 11 9 30 30 H 1.08994 * 110.48679 * 217.71200 * 12 11 9 31 31 H 0.97005 * 119.99752 * 271.57166 * 15 13 12 32 32 H 0.96998 * 119.99693 * 0.02562 * 18 16 15 33 33 H 1.08996 * 109.47516 * 300.00375 * 19 18 16 34 34 H 1.09000 * 109.47255 * 60.00654 * 19 18 16 35 35 H 1.09006 * 109.47171 * 300.00528 * 20 19 18 36 36 H 1.08999 * 109.47081 * 60.00404 * 20 19 18 37 37 H 1.08996 * 109.47205 * 300.00429 * 21 20 19 38 38 H 1.08999 * 109.46807 * 60.00088 * 21 20 19 39 39 H 0.96699 * 117.00295 * 180.02562 * 24 22 21 40 40 H 1.09000 * 110.48928 * 261.57113 * 25 9 7 41 41 H 1.08999 * 110.48469 * 24.21522 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6199 -2.5664 -0.8866 11 6 0.3897 -2.6105 1.2697 12 6 0.8870 -3.8563 2.0315 13 6 1.5493 -4.7309 0.9381 14 1 0.7963 -5.2861 0.3789 15 7 2.5352 -5.6427 1.5238 16 6 2.1645 -6.8807 1.9061 17 8 1.0116 -7.2408 1.7654 18 7 3.0716 -7.7197 2.4445 19 6 2.6685 -9.0653 2.8606 20 6 3.8785 -9.8058 3.4336 21 6 3.4577 -11.2113 3.8676 22 6 4.6496 -11.9409 4.4314 23 8 5.7252 -11.3929 4.4815 24 8 4.5162 -13.1994 4.8790 25 6 2.2416 -3.6812 0.0337 26 1 -0.4851 0.8400 0.0004 27 1 0.5170 -1.7208 1.8863 28 1 -0.6594 -2.7318 1.0000 29 1 1.6182 -3.5737 2.7889 30 1 0.0494 -4.3845 2.4870 31 1 3.4549 -5.3553 1.6363 32 1 3.9911 -7.4323 2.5571 33 1 1.8922 -8.9928 3.6223 34 1 2.2829 -9.6116 1.9998 35 1 4.6545 -9.8783 2.6715 36 1 4.2645 -9.2598 4.2944 37 1 2.6816 -11.1392 4.6295 38 1 3.0719 -11.7571 3.0066 39 1 5.3088 -13.6262 5.2321 40 1 2.3926 -4.0817 -0.9688 41 1 3.1916 -3.3703 0.4684 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573916971.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:04 Heat of formation + Delta-G solvation = -174.535586 kcal Electronic energy + Delta-G solvation = -21634.020193 eV Core-core repulsion = 18125.639979 eV Total energy + Delta-G solvation = -3508.380214 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.26527 -41.02105 -38.91797 -37.26861 -36.55295 -35.29417 -34.10278 -33.25999 -29.92630 -29.09854 -27.78220 -25.70248 -23.76801 -22.18645 -21.65934 -21.44564 -20.83726 -19.26931 -18.91113 -18.34457 -17.70198 -17.35489 -17.00703 -16.56865 -16.44196 -16.20304 -15.59953 -15.34049 -15.14566 -14.36592 -14.13686 -14.05659 -13.64414 -13.44377 -13.23666 -12.95971 -12.69692 -12.51189 -12.47448 -12.43787 -12.35311 -12.16865 -11.89645 -11.67016 -11.61975 -11.51501 -11.27744 -11.07420 -10.70389 -10.43652 -10.25458 -9.65303 -8.07943 -6.18203 1.25362 1.44794 1.45806 1.53131 1.71147 2.21407 2.25909 2.46667 3.22868 3.36971 3.87215 3.97573 4.00597 4.01362 4.08072 4.25240 4.53038 4.55726 4.69471 4.73881 4.77018 4.84535 4.88413 5.02729 5.08064 5.11670 5.17835 5.19646 5.41173 5.46771 5.55975 5.67197 5.68549 5.71849 5.95355 5.97856 6.10733 6.41830 6.93943 7.02397 7.17929 7.49152 7.65877 9.00762 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.045096 B = 0.002316 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.751678 B =12086.569979 C =12450.529177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.007 3.993 3 Si 0.954 3.046 4 H -0.270 1.270 5 H -0.290 1.290 6 H -0.269 1.269 7 C -0.525 4.525 8 H 0.061 0.939 9 C 0.037 3.963 10 H -0.005 1.005 11 C -0.082 4.082 12 C -0.121 4.121 13 C 0.168 3.832 14 H 0.071 0.929 15 N -0.723 5.723 16 C 0.699 3.301 17 O -0.638 6.638 18 N -0.736 5.736 19 C 0.140 3.860 20 C -0.110 4.110 21 C -0.109 4.109 22 C 0.484 3.516 23 O -0.556 6.556 24 O -0.516 6.516 25 C -0.104 4.104 26 H 0.259 0.741 27 H 0.037 0.963 28 H 0.020 0.980 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.410 0.590 32 H 0.411 0.589 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.426 0.574 40 H 0.060 0.940 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.235 -23.560 9.225 27.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.192 4.192 3 Si 0.780 3.220 4 H -0.196 1.196 5 H -0.216 1.216 6 H -0.194 1.194 7 C -0.563 4.563 8 H 0.079 0.921 9 C 0.018 3.982 10 H 0.013 0.987 11 C -0.120 4.120 12 C -0.160 4.160 13 C 0.062 3.938 14 H 0.090 0.910 15 N -0.378 5.378 16 C 0.399 3.601 17 O -0.520 6.520 18 N -0.392 5.392 19 C 0.015 3.985 20 C -0.148 4.148 21 C -0.147 4.147 22 C 0.328 3.672 23 O -0.448 6.448 24 O -0.330 6.330 25 C -0.142 4.142 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.039 0.961 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.246 0.754 32 H 0.247 0.753 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.288 0.712 40 H 0.079 0.921 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.990 -23.463 8.958 26.676 hybrid contribution 1.286 1.208 0.218 1.778 sum 10.276 -22.255 9.176 26.174 Atomic orbital electron populations 1.70120 1.07378 1.27175 1.51441 1.25807 0.95627 1.02589 0.95167 0.85673 0.78316 0.79099 0.78916 1.19557 1.21570 1.19422 1.21575 0.93097 0.91484 1.50154 0.92116 1.19209 0.93010 0.92880 0.93128 0.98694 1.21806 0.97115 0.95299 0.97824 1.22658 0.99572 0.95904 0.97863 1.21624 0.90214 0.88514 0.93413 0.91047 1.45014 1.13748 1.12557 1.66444 1.16153 0.84648 0.81043 0.78302 1.90886 1.19912 1.77609 1.63550 1.44958 1.12427 1.14938 1.66927 1.21178 0.96960 0.80750 0.99567 1.21473 0.97051 0.94058 1.02206 1.21288 0.94409 0.94421 1.04570 1.23799 0.90332 0.79744 0.73281 1.90741 1.31033 1.68472 1.54513 1.84510 1.46176 1.28509 1.73803 1.22547 0.99192 0.94227 0.98225 0.93246 0.94396 0.96128 0.91403 0.93208 0.75376 0.75271 0.91775 0.91627 0.90357 0.90463 0.85300 0.85229 0.71193 0.92123 0.90698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.14 12.33 21.44 0.26 -53.88 16 2 C 0.01 0.36 5.07 84.65 0.43 0.79 16 3 Si 0.95 43.23 29.54 68.60 2.03 45.26 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.52 -28.19 8.34 25.60 0.21 -27.98 16 8 H 0.06 3.11 7.55 -2.91 -0.02 3.09 16 9 C 0.04 1.82 2.84 -10.82 -0.03 1.79 16 10 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 11 C -0.08 -3.94 5.56 31.32 0.17 -3.77 16 12 C -0.12 -4.75 6.52 31.67 0.21 -4.54 16 13 C 0.17 6.03 3.26 46.28 0.15 6.18 16 14 H 0.07 2.85 7.55 -2.38 -0.02 2.83 16 15 N -0.72 -20.21 5.19 -451.64 -2.34 -22.55 16 16 C 0.70 20.35 8.57 179.05 1.53 21.89 16 17 O -0.64 -24.50 15.99 -4.00 -0.06 -24.56 16 18 N -0.74 -14.13 5.56 -478.53 -2.66 -16.79 16 19 C 0.14 2.15 5.67 86.38 0.49 2.64 16 20 C -0.11 -1.15 4.62 30.59 0.14 -1.01 16 21 C -0.11 -0.79 5.81 29.84 0.17 -0.62 16 22 C 0.48 5.68 8.33 71.23 0.59 6.27 16 23 O -0.56 -10.75 16.74 21.97 0.37 -10.38 16 24 O -0.52 -4.02 13.42 -51.47 -0.69 -4.71 16 25 C -0.10 -3.98 5.97 31.67 0.19 -3.79 16 26 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 27 H 0.04 2.00 7.17 -2.39 -0.02 1.98 16 28 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 30 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.41 8.77 8.58 -92.70 -0.80 7.98 16 32 H 0.41 5.49 8.49 -92.71 -0.79 4.70 16 33 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.08 0.88 8.10 -2.38 -0.02 0.86 16 36 H 0.08 0.89 8.10 -2.39 -0.02 0.87 16 37 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.43 0.22 9.10 -74.06 -0.67 -0.46 16 40 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.07 2.67 7.56 -2.39 -0.02 2.66 16 Total: -1.00 -75.56 344.44 -0.03 -75.59 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -1.20 Total: 14.15 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: 4.26 Total: -2.13 kcal Atomic # 7 Polarization: -88.47 SS G_CDS: -4.74 Total: -93.21 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -0.39 Total: -39.65 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -75.56 -0.03 -75.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573916971.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.945 kcal (2) G-P(sol) polarization free energy of solvation -75.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds