Wall clock time and date at job start Tue Mar 31 2020 06:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86791 * 120.00333 * 2 1 4 4 H 1.48498 * 109.47515 * 239.99824 * 3 2 1 5 5 H 1.48507 * 109.47160 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47275 * 119.99801 * 3 2 1 7 7 C 1.37882 * 119.99537 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99862 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00378 * 0.02562 * 7 2 1 10 10 H 1.09007 * 110.66866 * 61.78033 * 9 7 2 11 11 C 1.54887 * 110.75763 * 298.54799 * 9 7 2 12 12 C 1.54262 * 104.19355 * 203.74004 * 11 9 7 13 13 C 1.53870 * 106.60185 * 23.61106 * 12 11 9 14 14 H 1.08997 * 110.03460 * 240.66487 * 13 12 11 15 15 N 1.46506 * 110.03377 * 119.28257 * 13 12 11 16 16 C 1.34768 * 120.00174 * 87.09578 * 15 13 12 17 17 O 1.21593 * 119.99794 * 359.97438 * 16 15 13 18 18 N 1.34772 * 120.00504 * 180.02562 * 16 15 13 19 19 C 1.46495 * 120.00765 * 185.02122 * 18 16 15 20 20 C 1.52998 * 112.85081 * 291.74100 * 19 18 16 21 21 F 1.39899 * 109.47178 * 313.83108 * 20 19 18 22 22 C 1.53791 * 113.61075 * 62.93187 * 19 18 16 23 23 C 1.53787 * 87.07693 * 89.12124 * 22 19 18 24 24 C 1.53776 * 87.08435 * 25.43149 * 23 22 19 25 25 C 1.54264 * 106.63989 * 359.97336 * 13 12 11 26 26 H 0.97000 * 119.99865 * 359.97438 * 1 2 3 27 27 H 1.08993 * 110.48564 * 85.06328 * 11 9 7 28 28 H 1.09001 * 110.48545 * 322.41992 * 11 9 7 29 29 H 1.09001 * 110.03388 * 264.32143 * 12 11 9 30 30 H 1.09004 * 110.03208 * 142.89175 * 12 11 9 31 31 H 0.97000 * 119.99906 * 267.08601 * 15 13 12 32 32 H 0.97007 * 119.99383 * 5.01893 * 18 16 15 33 33 H 1.09005 * 109.47392 * 73.82778 * 20 19 18 34 34 H 1.08995 * 109.47392 * 193.82857 * 20 19 18 35 35 H 1.08999 * 113.61565 * 334.57295 * 22 19 18 36 36 H 1.09003 * 113.68840 * 203.67651 * 22 19 18 37 37 H 1.09003 * 113.60917 * 139.98123 * 23 22 19 38 38 H 1.08997 * 113.60868 * 270.88061 * 23 22 19 39 39 H 1.08999 * 113.61710 * 89.11224 * 24 23 22 40 40 H 1.08994 * 113.61839 * 220.02097 * 24 23 22 41 41 H 1.09002 * 110.48826 * 95.09712 * 25 13 12 42 42 H 1.09004 * 110.48684 * 217.73754 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6413 -2.5915 -0.8984 11 6 0.3766 -2.6282 1.2725 12 6 0.1818 -4.1488 1.4450 13 6 1.3574 -4.8275 0.7204 14 1 0.9840 -5.4665 -0.0798 15 7 2.1420 -5.6203 1.6703 16 6 1.7954 -6.8963 1.9311 17 8 0.8312 -7.3894 1.3783 18 7 2.5169 -7.6254 2.8053 19 6 2.2084 -9.0433 3.0067 20 6 0.8601 -9.2661 3.6944 21 9 0.7471 -8.4034 4.7899 22 6 2.4063 -9.9018 1.7461 23 6 3.8612 -10.0985 2.2041 24 6 3.3625 -9.8415 3.6359 25 6 2.2259 -3.6966 0.1319 26 1 -0.4850 0.8401 0.0004 27 1 -0.5842 -2.1347 1.1265 28 1 0.8944 -2.2096 2.1354 29 1 -0.7621 -4.4577 0.9958 30 1 0.1951 -4.4092 2.5033 31 1 2.9111 -5.2268 2.1115 32 1 3.2405 -7.2113 3.3011 33 1 0.0543 -9.0644 2.9885 34 1 0.7931 -10.2988 4.0368 35 1 2.3133 -9.3404 0.8165 36 1 1.8206 -10.8211 1.7460 37 1 4.2353 -11.1101 2.0471 38 1 4.5425 -9.3319 1.8349 39 1 3.0377 -10.7440 4.1537 40 1 4.0412 -9.2315 4.2318 41 1 3.0428 -3.4505 0.8103 42 1 2.6138 -3.9828 -0.8458 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575119261.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:19 Heat of formation + Delta-G solvation = -74.646152 kcal Electronic energy + Delta-G solvation = -23004.484458 eV Core-core repulsion = 19512.808564 eV Total energy + Delta-G solvation = -3491.675893 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -47.55921 -40.50223 -38.70620 -36.88501 -33.68412 -33.02222 -31.68406 -28.80309 -28.10196 -26.80663 -26.08665 -23.91454 -23.02531 -21.27724 -19.79119 -19.23590 -19.13400 -18.04611 -16.68255 -16.39985 -16.13652 -15.72328 -15.35858 -15.17069 -14.76778 -14.50557 -14.15231 -14.02866 -13.91932 -12.74036 -12.66338 -12.54158 -12.29352 -12.19200 -11.74734 -11.34195 -11.22778 -11.03931 -10.97135 -10.89996 -10.85325 -10.58802 -10.55663 -10.25897 -9.92043 -9.72276 -9.48064 -9.20511 -9.06449 -8.78720 -8.45554 -8.34003 -5.99005 -4.02725 2.76977 3.32235 3.37539 3.39248 3.40746 3.98992 4.22025 4.34815 4.42936 4.45427 4.55732 4.92063 4.98733 5.18411 5.33035 5.33501 5.38626 5.56086 5.56271 5.64632 5.72592 5.79423 5.87974 5.89707 5.95830 6.37098 6.40755 6.56698 6.62836 6.71047 6.78917 6.93612 7.00518 7.09099 7.31559 7.42095 7.74626 7.91231 8.04977 8.24061 8.44502 8.84027 8.99081 9.61242 11.10016 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.034013 B = 0.003343 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.008381 B = 8374.677590 C = 8627.582439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.516 4.516 8 H 0.054 0.946 9 C 0.052 3.948 10 H 0.032 0.968 11 C -0.100 4.100 12 C -0.135 4.135 13 C 0.157 3.843 14 H 0.079 0.921 15 N -0.732 5.732 16 C 0.705 3.295 17 O -0.591 6.591 18 N -0.728 5.728 19 C 0.142 3.858 20 C 0.062 3.938 21 F -0.215 7.215 22 C -0.135 4.135 23 C -0.138 4.138 24 C -0.136 4.136 25 C -0.121 4.121 26 H 0.260 0.740 27 H 0.068 0.932 28 H 0.045 0.955 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.393 0.607 32 H 0.398 0.602 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.096 0.904 40 H 0.075 0.925 41 H 0.060 0.940 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.733 -19.864 7.181 22.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.554 4.554 8 H 0.073 0.927 9 C 0.033 3.967 10 H 0.050 0.950 11 C -0.138 4.138 12 C -0.174 4.174 13 C 0.053 3.947 14 H 0.097 0.903 15 N -0.386 5.386 16 C 0.405 3.595 17 O -0.469 6.469 18 N -0.384 5.384 19 C 0.053 3.947 20 C 0.005 3.995 21 F -0.196 7.196 22 C -0.174 4.174 23 C -0.176 4.176 24 C -0.174 4.174 25 C -0.159 4.159 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.226 0.774 32 H 0.232 0.768 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.109 0.891 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.115 0.885 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.670 -20.153 6.652 21.967 hybrid contribution 1.101 1.410 0.615 1.892 sum 6.771 -18.743 7.267 21.213 Atomic orbital electron populations 1.69953 1.05864 1.26540 1.50260 1.24976 0.94834 0.98983 0.95096 0.86700 0.79610 0.83369 0.78520 1.20338 1.21365 1.20368 1.21060 0.92692 0.90483 1.51157 0.92743 1.19559 0.91997 0.90965 0.94183 0.94983 1.22298 1.01595 0.90449 0.99451 1.22668 0.97133 0.98719 0.98910 1.21735 0.91693 0.91436 0.89810 0.90293 1.45545 1.33878 1.11166 1.47961 1.15972 0.82428 0.81341 0.79717 1.90877 1.28940 1.71640 1.55441 1.44674 1.38642 1.09033 1.46059 1.21603 0.94293 0.81348 0.97412 1.22380 0.99001 0.92263 0.85824 1.92746 1.97319 1.72983 1.56526 1.23177 0.96378 0.99587 0.98237 1.22828 0.96914 1.02146 0.95665 1.23256 0.96798 1.00000 0.97308 1.22770 0.98745 0.95483 0.98875 0.93010 0.91292 0.93589 0.92666 0.93232 0.77377 0.76801 0.89365 0.90459 0.89940 0.89139 0.90996 0.89952 0.88547 0.90611 0.92154 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.40 12.02 55.43 0.67 -24.73 16 2 C 0.06 1.73 5.33 -17.82 -0.10 1.64 16 3 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -13.88 8.54 -34.44 -0.29 -14.18 16 8 H 0.05 1.43 7.78 -52.48 -0.41 1.02 16 9 C 0.05 1.26 2.82 -89.74 -0.25 1.01 16 10 H 0.03 0.85 8.14 -51.92 -0.42 0.43 16 11 C -0.10 -2.33 5.57 -25.08 -0.14 -2.47 16 12 C -0.14 -2.73 6.59 -25.62 -0.17 -2.90 16 13 C 0.16 2.91 3.23 -66.81 -0.22 2.69 16 14 H 0.08 1.54 7.59 -51.93 -0.39 1.15 16 15 N -0.73 -11.29 4.99 -57.58 -0.29 -11.58 16 16 C 0.71 11.01 8.04 -86.93 -0.70 10.31 16 17 O -0.59 -11.19 14.12 5.28 0.07 -11.12 16 18 N -0.73 -8.51 4.93 -51.66 -0.25 -8.77 16 19 C 0.14 1.45 0.86 -131.00 -0.11 1.33 16 20 C 0.06 0.68 6.79 37.16 0.25 0.93 16 21 F -0.21 -2.97 17.14 2.25 0.04 -2.93 16 22 C -0.14 -1.28 6.98 -25.91 -0.18 -1.46 16 23 C -0.14 -1.02 7.99 -25.92 -0.21 -1.22 16 24 C -0.14 -0.96 7.37 -25.92 -0.19 -1.15 16 25 C -0.12 -2.39 5.95 -25.03 -0.15 -2.54 16 26 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.07 1.77 7.37 -51.93 -0.38 1.39 16 28 H 0.05 1.10 8.04 -51.93 -0.42 0.69 16 29 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.05 0.98 7.92 -51.93 -0.41 0.56 16 31 H 0.39 5.11 8.37 -40.82 -0.34 4.77 16 32 H 0.40 3.72 8.70 -40.82 -0.35 3.36 16 33 H 0.09 1.15 7.27 -51.93 -0.38 0.78 16 34 H 0.08 0.60 7.89 -51.93 -0.41 0.19 16 35 H 0.08 1.01 7.31 -51.93 -0.38 0.64 16 36 H 0.09 0.71 8.10 -51.93 -0.42 0.29 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.10 0.54 7.93 -51.93 -0.41 0.13 16 40 H 0.08 0.50 8.10 -51.93 -0.42 0.08 16 41 H 0.06 1.15 7.63 -51.93 -0.40 0.75 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 339.13 15.07 5.11 5.11 Total: -1.00 -31.12 339.13 -8.90 -40.02 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -6.78 Total: 5.92 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -2.45 Total: -8.00 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: 0.12 Total: -45.08 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.07 Total: -11.12 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.04 Total: -2.93 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.12 -8.90 -40.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575119261.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.621 kcal (2) G-P(sol) polarization free energy of solvation -31.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds