Wall clock time and date at job start Tue Mar 31 2020 06:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86791 * 120.00333 * 2 1 4 4 H 1.48498 * 109.47515 * 239.99824 * 3 2 1 5 5 H 1.48507 * 109.47160 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47275 * 119.99801 * 3 2 1 7 7 C 1.37882 * 119.99537 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99862 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00378 * 0.02562 * 7 2 1 10 10 H 1.09007 * 110.66866 * 61.78033 * 9 7 2 11 11 C 1.54887 * 110.75763 * 298.54799 * 9 7 2 12 12 C 1.54262 * 104.19355 * 203.74004 * 11 9 7 13 13 C 1.53870 * 106.60185 * 23.61106 * 12 11 9 14 14 H 1.08997 * 110.03460 * 240.66487 * 13 12 11 15 15 N 1.46506 * 110.03377 * 119.28257 * 13 12 11 16 16 C 1.34768 * 120.00174 * 87.09578 * 15 13 12 17 17 O 1.21593 * 119.99794 * 359.97438 * 16 15 13 18 18 N 1.34772 * 120.00504 * 180.02562 * 16 15 13 19 19 C 1.46495 * 120.00765 * 185.02122 * 18 16 15 20 20 C 1.52998 * 112.85081 * 291.74100 * 19 18 16 21 21 F 1.39899 * 109.47178 * 313.83108 * 20 19 18 22 22 C 1.53791 * 113.61075 * 62.93187 * 19 18 16 23 23 C 1.53787 * 87.07693 * 89.12124 * 22 19 18 24 24 C 1.53776 * 87.08435 * 25.43149 * 23 22 19 25 25 C 1.54264 * 106.63989 * 359.97336 * 13 12 11 26 26 H 0.97000 * 119.99865 * 359.97438 * 1 2 3 27 27 H 1.08993 * 110.48564 * 85.06328 * 11 9 7 28 28 H 1.09001 * 110.48545 * 322.41992 * 11 9 7 29 29 H 1.09001 * 110.03388 * 264.32143 * 12 11 9 30 30 H 1.09004 * 110.03208 * 142.89175 * 12 11 9 31 31 H 0.97000 * 119.99906 * 267.08601 * 15 13 12 32 32 H 0.97007 * 119.99383 * 5.01893 * 18 16 15 33 33 H 1.09005 * 109.47392 * 73.82778 * 20 19 18 34 34 H 1.08995 * 109.47392 * 193.82857 * 20 19 18 35 35 H 1.08999 * 113.61565 * 334.57295 * 22 19 18 36 36 H 1.09003 * 113.68840 * 203.67651 * 22 19 18 37 37 H 1.09003 * 113.60917 * 139.98123 * 23 22 19 38 38 H 1.08997 * 113.60868 * 270.88061 * 23 22 19 39 39 H 1.08999 * 113.61710 * 89.11224 * 24 23 22 40 40 H 1.08994 * 113.61839 * 220.02097 * 24 23 22 41 41 H 1.09002 * 110.48826 * 95.09712 * 25 13 12 42 42 H 1.09004 * 110.48684 * 217.73754 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6413 -2.5915 -0.8984 11 6 0.3766 -2.6282 1.2725 12 6 0.1818 -4.1488 1.4450 13 6 1.3574 -4.8275 0.7204 14 1 0.9840 -5.4665 -0.0798 15 7 2.1420 -5.6203 1.6703 16 6 1.7954 -6.8963 1.9311 17 8 0.8312 -7.3894 1.3783 18 7 2.5169 -7.6254 2.8053 19 6 2.2084 -9.0433 3.0067 20 6 0.8601 -9.2661 3.6944 21 9 0.7471 -8.4034 4.7899 22 6 2.4063 -9.9018 1.7461 23 6 3.8612 -10.0985 2.2041 24 6 3.3625 -9.8415 3.6359 25 6 2.2259 -3.6966 0.1319 26 1 -0.4850 0.8401 0.0004 27 1 -0.5842 -2.1347 1.1265 28 1 0.8944 -2.2096 2.1354 29 1 -0.7621 -4.4577 0.9958 30 1 0.1951 -4.4092 2.5033 31 1 2.9111 -5.2268 2.1115 32 1 3.2405 -7.2113 3.3011 33 1 0.0543 -9.0644 2.9885 34 1 0.7931 -10.2988 4.0368 35 1 2.3133 -9.3404 0.8165 36 1 1.8206 -10.8211 1.7460 37 1 4.2353 -11.1101 2.0471 38 1 4.5425 -9.3319 1.8349 39 1 3.0377 -10.7440 4.1537 40 1 4.0412 -9.2315 4.2318 41 1 3.0428 -3.4505 0.8103 42 1 2.6138 -3.9828 -0.8458 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575119261.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:18 Heat of formation + Delta-G solvation = -94.286631 kcal Electronic energy + Delta-G solvation = -23005.336133 eV Core-core repulsion = 19512.808564 eV Total energy + Delta-G solvation = -3492.527568 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.53519 -41.53964 -39.84154 -38.40979 -35.26390 -34.38781 -33.28687 -29.98867 -29.64517 -28.45123 -26.73363 -25.80771 -23.91091 -22.38822 -21.36663 -20.87522 -20.18331 -19.29312 -18.45378 -17.43497 -17.10053 -16.75159 -16.68425 -16.59683 -16.16565 -15.77942 -15.49503 -15.35819 -15.05583 -14.45816 -14.02509 -13.63542 -13.43190 -13.31470 -13.02159 -12.93535 -12.76339 -12.59728 -12.43366 -12.14523 -12.07827 -11.79228 -11.70946 -11.63787 -11.40804 -11.35627 -11.07875 -10.91710 -10.81097 -10.44659 -10.19990 -9.70586 -8.08576 -6.19345 1.44449 1.45480 1.52934 1.68524 2.18178 2.45954 3.22027 3.22774 3.34138 3.55515 3.66986 3.90271 3.94237 4.05545 4.16254 4.21565 4.32252 4.34761 4.68450 4.74085 4.78354 4.79334 4.84300 4.92879 5.03867 5.06049 5.07561 5.10855 5.14329 5.16320 5.30587 5.32138 5.41889 5.66972 5.68666 5.73391 5.93445 6.00506 6.05108 6.38226 6.91021 7.13652 7.48405 7.63957 8.99679 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.034013 B = 0.003343 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.008381 B = 8374.677590 C = 8627.582439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.010 3.990 3 Si 0.955 3.045 4 H -0.271 1.271 5 H -0.289 1.289 6 H -0.269 1.269 7 C -0.530 4.530 8 H 0.060 0.940 9 C 0.040 3.960 10 H 0.000 1.000 11 C -0.088 4.088 12 C -0.124 4.124 13 C 0.173 3.827 14 H 0.069 0.931 15 N -0.726 5.726 16 C 0.702 3.298 17 O -0.627 6.627 18 N -0.714 5.714 19 C 0.124 3.876 20 C 0.056 3.944 21 F -0.231 7.231 22 C -0.139 4.139 23 C -0.129 4.129 24 C -0.118 4.118 25 C -0.105 4.105 26 H 0.259 0.741 27 H 0.037 0.963 28 H 0.036 0.964 29 H 0.048 0.952 30 H 0.056 0.944 31 H 0.407 0.593 32 H 0.411 0.589 33 H 0.060 0.940 34 H 0.116 0.884 35 H 0.048 0.952 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.120 0.880 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.080 -21.360 8.466 24.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.188 4.188 3 Si 0.780 3.220 4 H -0.196 1.196 5 H -0.215 1.215 6 H -0.194 1.194 7 C -0.568 4.568 8 H 0.078 0.922 9 C 0.021 3.979 10 H 0.019 0.981 11 C -0.127 4.127 12 C -0.163 4.163 13 C 0.067 3.933 14 H 0.087 0.913 15 N -0.380 5.380 16 C 0.402 3.598 17 O -0.508 6.508 18 N -0.370 5.370 19 C 0.036 3.964 20 C 0.000 4.000 21 F -0.213 7.213 22 C -0.177 4.177 23 C -0.167 4.167 24 C -0.156 4.156 25 C -0.143 4.143 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.243 0.757 32 H 0.248 0.752 33 H 0.078 0.922 34 H 0.134 0.866 35 H 0.067 0.933 36 H 0.125 0.875 37 H 0.110 0.890 38 H 0.094 0.906 39 H 0.138 0.862 40 H 0.104 0.896 41 H 0.092 0.908 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.074 -21.671 7.972 24.461 hybrid contribution 0.322 1.829 0.198 1.867 sum 8.396 -19.842 8.170 23.042 Atomic orbital electron populations 1.70102 1.07371 1.27178 1.51325 1.25795 0.95616 1.02542 0.94894 0.85664 0.78329 0.79040 0.78922 1.19566 1.21477 1.19407 1.21463 0.93159 0.91625 1.50590 0.92201 1.19546 0.92828 0.92368 0.93122 0.98144 1.22064 0.99597 0.92373 0.98625 1.22537 0.97840 0.96422 0.99527 1.21295 0.91032 0.91055 0.89903 0.91257 1.45246 1.34019 1.11152 1.47626 1.16120 0.82339 0.81276 0.80030 1.90859 1.30666 1.72329 1.56911 1.44581 1.38052 1.09681 1.44715 1.21975 0.95283 0.80559 0.98575 1.22576 0.98645 0.93855 0.84913 1.92709 1.97403 1.73844 1.57305 1.23232 0.98594 0.99687 0.96236 1.22786 0.95192 1.03127 0.95545 1.23267 0.94932 1.00159 0.97233 1.22561 0.98034 0.93746 0.99959 0.93216 0.94420 0.94478 0.93301 0.92530 0.75691 0.75246 0.92196 0.86637 0.93348 0.87484 0.89029 0.90598 0.86197 0.89576 0.90779 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.98 12.02 21.45 0.26 -53.73 16 2 C 0.01 0.57 5.33 84.66 0.45 1.02 16 3 Si 0.95 43.28 29.54 68.60 2.03 45.31 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.53 -28.67 8.54 25.60 0.22 -28.45 16 8 H 0.06 3.10 7.78 -2.91 -0.02 3.08 16 9 C 0.04 2.00 2.82 -10.22 -0.03 1.97 16 10 H 0.00 0.02 8.14 -2.38 -0.02 0.00 16 11 C -0.09 -4.24 5.57 31.67 0.18 -4.06 16 12 C -0.12 -5.07 6.59 31.32 0.21 -4.87 16 13 C 0.17 6.33 3.23 45.71 0.15 6.48 16 14 H 0.07 2.72 7.59 -2.39 -0.02 2.71 16 15 N -0.73 -21.53 4.99 -454.36 -2.27 -23.80 16 16 C 0.70 21.41 8.04 179.06 1.44 22.85 16 17 O -0.63 -23.93 14.12 -4.01 -0.06 -23.99 16 18 N -0.71 -15.55 4.93 -435.60 -2.15 -17.69 16 19 C 0.12 2.27 0.86 4.13 0.00 2.28 16 20 C 0.06 1.16 6.79 71.98 0.49 1.65 16 21 F -0.23 -6.10 17.14 44.97 0.77 -5.32 16 22 C -0.14 -2.41 6.98 31.13 0.22 -2.19 16 23 C -0.13 -1.50 7.99 31.12 0.25 -1.25 16 24 C -0.12 -1.22 7.37 31.12 0.23 -0.99 16 25 C -0.10 -4.08 5.95 31.69 0.19 -3.89 16 26 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 27 H 0.04 2.01 7.37 -2.39 -0.02 2.00 16 28 H 0.04 1.81 8.04 -2.39 -0.02 1.79 16 29 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.06 2.21 7.92 -2.38 -0.02 2.20 16 31 H 0.41 9.76 8.37 -92.71 -0.78 8.98 16 32 H 0.41 6.69 8.70 -92.70 -0.81 5.89 16 33 H 0.06 1.57 7.27 -2.38 -0.02 1.56 16 34 H 0.12 1.45 7.89 -2.39 -0.02 1.43 16 35 H 0.05 1.18 7.31 -2.39 -0.02 1.16 16 36 H 0.11 1.45 8.10 -2.39 -0.02 1.43 16 37 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.12 0.74 7.93 -2.39 -0.02 0.72 16 40 H 0.09 0.77 8.10 -2.39 -0.02 0.75 16 41 H 0.07 2.68 7.63 -2.39 -0.02 2.66 16 42 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 Total: -1.00 -69.10 339.13 2.02 -67.08 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: -0.55 Total: 21.62 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: 3.99 Total: -9.47 kcal Atomic # 7 Polarization: -91.07 SS G_CDS: -4.16 Total: -95.22 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.06 Total: -23.99 kcal Atomic # 9 Polarization: -6.10 SS G_CDS: 0.77 Total: -5.32 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -69.10 2.02 -67.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575119261.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.205 kcal (2) G-P(sol) polarization free energy of solvation -69.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds