Wall clock time and date at job start Tue Mar 31 2020 06:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46894 * 111.00388 * 2 1 4 4 C 1.46902 * 110.99809 * 123.95645 * 2 1 3 5 5 H 1.09004 * 109.47084 * 273.04808 * 4 2 1 6 6 C 1.52996 * 109.47148 * 153.05315 * 4 2 1 7 7 N 1.46897 * 109.47370 * 53.05337 * 6 4 2 8 8 C 1.46902 * 111.00039 * 170.68677 * 7 6 4 9 9 C 1.50700 * 109.47069 * 179.97438 * 8 7 6 10 10 H 1.08006 * 120.00172 * 359.97438 * 9 8 7 11 11 C 1.37878 * 120.00208 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99559 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00181 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46935 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.46798 * 120.00356 * 13 11 9 16 16 H 1.48497 * 109.47375 * 240.00264 * 13 11 9 17 17 C 1.50701 * 109.47300 * 33.04913 * 4 2 1 18 18 C 1.38414 * 120.02158 * 51.45719 * 17 4 2 19 19 F 1.35097 * 120.01803 * 0.02562 * 18 17 4 20 20 C 1.38481 * 119.96926 * 179.74549 * 18 17 4 21 21 C 1.38205 * 120.02850 * 0.53161 * 20 18 17 22 22 C 1.38215 * 120.04709 * 359.74548 * 21 20 18 23 23 C 1.38417 * 120.02599 * 231.73230 * 17 4 2 24 24 F 1.35102 * 120.01442 * 0.02562 * 23 17 4 25 25 H 1.09006 * 109.47228 * 52.05165 * 1 2 3 26 26 H 1.08999 * 109.46929 * 292.05025 * 1 2 3 27 27 H 1.08999 * 109.46998 * 172.04996 * 1 2 3 28 28 H 1.09009 * 109.46985 * 62.65662 * 3 2 1 29 29 H 1.08998 * 109.47413 * 182.65844 * 3 2 1 30 30 H 1.09002 * 109.47070 * 302.66024 * 3 2 1 31 31 H 1.09005 * 109.47275 * 173.04905 * 6 4 2 32 32 H 1.09001 * 109.47163 * 293.04711 * 6 4 2 33 33 H 1.00902 * 110.99319 * 294.62949 * 7 6 4 34 34 H 1.09005 * 109.46579 * 299.99172 * 8 7 6 35 35 H 1.08997 * 109.47980 * 59.99552 * 8 7 6 36 36 H 0.97000 * 119.99746 * 180.02562 * 12 11 9 37 37 H 1.08001 * 119.98248 * 180.27263 * 20 18 17 38 38 H 1.08001 * 119.97555 * 179.72230 * 21 20 18 39 39 H 1.08002 * 119.98090 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 2.0746 -0.1152 2.0084 6 6 3.3786 -1.3168 0.7852 7 7 4.2393 -0.2198 0.3229 8 6 5.6323 -0.6656 0.1858 9 6 6.4831 0.4838 -0.2897 10 1 6.0338 1.4489 -0.4723 11 6 7.8350 0.3035 -0.4917 12 7 8.3820 -0.8718 -0.2699 13 14 8.8894 1.7280 -1.0818 14 1 8.0399 2.9336 -1.2561 15 1 9.9476 2.0093 -0.0787 16 1 9.5189 1.3738 -2.3793 17 6 1.0636 -1.9091 1.4478 18 6 0.6655 -2.7710 0.4405 19 9 1.1126 -2.5883 -0.8212 20 6 -0.1866 -3.8241 0.7278 21 6 -0.6482 -4.0082 2.0174 22 6 -0.2559 -3.1448 3.0228 23 6 0.6006 -2.0945 2.7390 24 9 0.9835 -1.2503 3.7219 25 1 -0.3634 0.6320 -0.8104 26 1 -0.3633 0.3858 0.9525 27 1 -0.3633 -1.0178 -0.1421 28 1 1.6850 1.8797 0.9129 29 1 3.0841 1.3426 -0.0477 30 1 1.6080 1.9093 -0.8652 31 1 3.8214 -1.7788 1.6677 32 1 3.2827 -2.0613 -0.0052 33 1 3.8969 0.1678 -0.5434 34 1 5.9989 -1.0143 1.1514 35 1 5.6841 -1.4791 -0.5378 36 1 9.3331 -0.9986 -0.4117 37 1 -0.4938 -4.4994 -0.0571 38 1 -1.3163 -4.8272 2.2396 39 1 -0.6170 -3.2899 4.0303 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577386599.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:55 Heat of formation + Delta-G solvation = -36.738474 kcal Electronic energy + Delta-G solvation = -23036.900930 eV Core-core repulsion = 19423.408532 eV Total energy + Delta-G solvation = -3613.492398 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.140 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.10719 -48.91425 -39.51626 -37.56003 -34.64097 -32.48167 -31.86755 -30.45805 -28.63982 -27.15000 -26.00951 -23.19721 -23.05281 -22.81491 -21.31926 -20.15212 -18.18902 -17.50358 -16.50431 -16.38469 -15.99456 -15.64478 -15.40803 -15.24453 -14.79527 -14.67195 -14.42302 -14.38328 -13.69822 -13.04352 -12.87484 -12.81763 -12.54990 -12.44680 -12.14496 -12.02996 -11.95143 -11.67809 -11.40312 -11.19018 -10.99415 -10.68492 -10.55201 -10.34150 -9.81628 -9.18243 -8.95402 -8.84759 -8.44825 -8.12059 -7.22914 -5.99200 -4.00853 0.78644 0.81375 3.16237 3.33818 3.40823 3.45834 3.78364 4.07873 4.28449 4.32761 4.47224 4.60648 4.64915 4.94343 5.24650 5.33829 5.36920 5.43037 5.53493 5.58063 5.70304 5.74258 5.79411 5.84989 5.89382 5.92182 5.94940 5.98741 6.20991 6.44027 6.58758 6.67696 7.20110 7.23582 7.35379 7.49791 7.82215 8.17387 8.45160 8.65783 9.08548 9.63827 11.12096 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.024022 B = 0.004152 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.327169 B = 6742.338158 C = 6886.983656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.530 5.530 3 C 0.007 3.993 4 C 0.128 3.872 5 H 0.068 0.932 6 C 0.075 3.925 7 N -0.688 5.688 8 C 0.191 3.809 9 C -0.511 4.511 10 H 0.062 0.938 11 C 0.055 3.945 12 N -0.898 5.898 13 Si 0.898 3.102 14 H -0.272 1.272 15 H -0.285 1.285 16 H -0.285 1.285 17 C -0.155 4.155 18 C 0.154 3.846 19 F -0.112 7.112 20 C -0.174 4.174 21 C -0.064 4.064 22 C -0.170 4.170 23 C 0.134 3.866 24 F -0.128 7.128 25 H 0.066 0.934 26 H 0.020 0.980 27 H 0.062 0.938 28 H 0.020 0.980 29 H 0.116 0.884 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.030 0.970 33 H 0.339 0.661 34 H 0.026 0.974 35 H -0.013 1.013 36 H 0.260 0.740 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.149 -5.097 4.165 22.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.254 5.254 3 C -0.141 4.141 4 C 0.020 3.980 5 H 0.086 0.914 6 C -0.056 4.056 7 N -0.322 5.322 8 C 0.065 3.935 9 C -0.550 4.550 10 H 0.080 0.920 11 C -0.146 4.146 12 N -0.538 5.538 13 Si 0.726 3.274 14 H -0.196 1.196 15 H -0.211 1.211 16 H -0.211 1.211 17 C -0.157 4.157 18 C 0.134 3.866 19 F -0.090 7.090 20 C -0.193 4.193 21 C -0.082 4.082 22 C -0.189 4.189 23 C 0.114 3.886 24 F -0.106 7.106 25 H 0.085 0.915 26 H 0.038 0.962 27 H 0.081 0.919 28 H 0.039 0.961 29 H 0.134 0.866 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.048 0.952 33 H 0.160 0.840 34 H 0.044 0.956 35 H 0.005 0.995 36 H 0.070 0.930 37 H 0.159 0.841 38 H 0.159 0.841 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -20.661 -5.098 4.327 21.716 hybrid contribution 0.451 0.644 -0.315 0.847 sum -20.210 -4.454 4.012 21.080 Atomic orbital electron populations 1.22525 0.88643 1.01771 0.99887 1.62066 1.06750 1.14823 1.41728 1.22951 1.04783 0.86941 0.99453 1.20651 0.92985 0.91076 0.93321 0.91405 1.21807 0.90296 0.93840 0.99613 1.60949 1.04134 1.30596 1.36508 1.19577 0.82604 0.95205 0.96108 1.21211 0.92728 0.96983 1.44056 0.91958 1.24989 0.98026 0.95851 0.95729 1.69980 1.11860 1.22383 1.49535 0.86439 0.80259 0.82461 0.78219 1.19649 1.21073 1.21124 1.20071 1.02815 1.00646 0.92195 1.17139 0.95192 0.94392 0.79838 1.91615 1.87045 1.94491 1.35804 1.21247 1.00532 0.98794 0.98708 1.20806 0.98026 0.98183 0.91221 1.21147 1.00548 0.95750 1.01447 1.17247 0.96766 0.90142 0.84416 1.91532 1.89570 1.69297 1.60245 0.91494 0.96160 0.91937 0.96101 0.86629 0.92069 0.91635 0.95169 0.83976 0.95596 0.99527 0.93025 0.84065 0.84099 0.84146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 8.41 60.06 0.51 0.77 16 2 N -0.53 -8.18 3.90 -244.58 -0.95 -9.14 16 3 C 0.01 0.10 8.90 60.06 0.53 0.63 16 4 C 0.13 2.08 2.18 -68.86 -0.15 1.93 16 5 H 0.07 1.17 6.88 -51.93 -0.36 0.81 16 6 C 0.08 1.45 5.39 -3.83 -0.02 1.43 16 7 N -0.69 -15.20 4.96 -115.06 -0.57 -15.77 16 8 C 0.19 5.16 5.41 -4.97 -0.03 5.13 16 9 C -0.51 -14.67 9.32 -34.44 -0.32 -14.99 16 10 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 11 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 12 N -0.90 -27.28 13.29 55.43 0.74 -26.55 16 13 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 14 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 16 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 17 C -0.15 -2.15 3.57 -104.49 -0.37 -2.52 16 18 C 0.15 2.00 4.89 -39.43 -0.19 1.80 16 19 F -0.11 -1.67 14.41 2.25 0.03 -1.64 16 20 C -0.17 -1.68 10.02 -39.50 -0.40 -2.07 16 21 C -0.06 -0.51 10.04 -39.60 -0.40 -0.91 16 22 C -0.17 -1.59 10.03 -39.50 -0.40 -1.99 16 23 C 0.13 1.68 7.24 -39.43 -0.29 1.40 16 24 F -0.13 -1.76 16.22 2.25 0.04 -1.73 16 25 H 0.07 0.78 8.07 -51.93 -0.42 0.37 16 26 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.06 0.79 4.81 -51.93 -0.25 0.54 16 28 H 0.02 0.30 8.09 -51.92 -0.42 -0.12 16 29 H 0.12 2.05 4.50 -51.93 -0.23 1.81 16 30 H 0.06 0.82 8.10 -51.93 -0.42 0.40 16 31 H 0.07 1.30 8.08 -51.93 -0.42 0.88 16 32 H 0.03 0.60 6.88 -51.93 -0.36 0.25 16 33 H 0.34 7.30 6.07 -39.29 -0.24 7.07 16 34 H 0.03 0.75 8.13 -51.93 -0.42 0.33 16 35 H -0.01 -0.38 8.14 -51.93 -0.42 -0.80 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 38 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 39 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 LS Contribution 320.65 15.07 4.83 4.83 Total: -1.00 -31.06 320.65 -7.72 -38.78 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -5.20 Total: 2.17 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -1.62 Total: -7.89 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -0.79 Total: -51.45 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.07 Total: -3.37 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.06 -7.72 -38.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577386599.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.041 kcal (2) G-P(sol) polarization free energy of solvation -31.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds