Wall clock time and date at job start Tue Mar 31 2020 06:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46894 * 111.00388 * 2 1 4 4 C 1.46902 * 110.99809 * 123.95645 * 2 1 3 5 5 H 1.09004 * 109.47084 * 273.04808 * 4 2 1 6 6 C 1.52996 * 109.47148 * 153.05315 * 4 2 1 7 7 N 1.46897 * 109.47370 * 53.05337 * 6 4 2 8 8 C 1.46902 * 111.00039 * 170.68677 * 7 6 4 9 9 C 1.50700 * 109.47069 * 179.97438 * 8 7 6 10 10 H 1.08006 * 120.00172 * 359.97438 * 9 8 7 11 11 C 1.37878 * 120.00208 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99559 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00181 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46935 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.46798 * 120.00356 * 13 11 9 16 16 H 1.48497 * 109.47375 * 240.00264 * 13 11 9 17 17 C 1.50701 * 109.47300 * 33.04913 * 4 2 1 18 18 C 1.38414 * 120.02158 * 51.45719 * 17 4 2 19 19 F 1.35097 * 120.01803 * 0.02562 * 18 17 4 20 20 C 1.38481 * 119.96926 * 179.74549 * 18 17 4 21 21 C 1.38205 * 120.02850 * 0.53161 * 20 18 17 22 22 C 1.38215 * 120.04709 * 359.74548 * 21 20 18 23 23 C 1.38417 * 120.02599 * 231.73230 * 17 4 2 24 24 F 1.35102 * 120.01442 * 0.02562 * 23 17 4 25 25 H 1.09006 * 109.47228 * 52.05165 * 1 2 3 26 26 H 1.08999 * 109.46929 * 292.05025 * 1 2 3 27 27 H 1.08999 * 109.46998 * 172.04996 * 1 2 3 28 28 H 1.09009 * 109.46985 * 62.65662 * 3 2 1 29 29 H 1.08998 * 109.47413 * 182.65844 * 3 2 1 30 30 H 1.09002 * 109.47070 * 302.66024 * 3 2 1 31 31 H 1.09005 * 109.47275 * 173.04905 * 6 4 2 32 32 H 1.09001 * 109.47163 * 293.04711 * 6 4 2 33 33 H 1.00902 * 110.99319 * 294.62949 * 7 6 4 34 34 H 1.09005 * 109.46579 * 299.99172 * 8 7 6 35 35 H 1.08997 * 109.47980 * 59.99552 * 8 7 6 36 36 H 0.97000 * 119.99746 * 180.02562 * 12 11 9 37 37 H 1.08001 * 119.98248 * 180.27263 * 20 18 17 38 38 H 1.08001 * 119.97555 * 179.72230 * 21 20 18 39 39 H 1.08002 * 119.98090 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9954 -0.7660 1.1376 5 1 2.0746 -0.1152 2.0084 6 6 3.3786 -1.3168 0.7852 7 7 4.2393 -0.2198 0.3229 8 6 5.6323 -0.6656 0.1858 9 6 6.4831 0.4838 -0.2897 10 1 6.0338 1.4489 -0.4723 11 6 7.8350 0.3035 -0.4917 12 7 8.3820 -0.8718 -0.2699 13 14 8.8894 1.7280 -1.0818 14 1 8.0399 2.9336 -1.2561 15 1 9.9476 2.0093 -0.0787 16 1 9.5189 1.3738 -2.3793 17 6 1.0636 -1.9091 1.4478 18 6 0.6655 -2.7710 0.4405 19 9 1.1126 -2.5883 -0.8212 20 6 -0.1866 -3.8241 0.7278 21 6 -0.6482 -4.0082 2.0174 22 6 -0.2559 -3.1448 3.0228 23 6 0.6006 -2.0945 2.7390 24 9 0.9835 -1.2503 3.7219 25 1 -0.3634 0.6320 -0.8104 26 1 -0.3633 0.3858 0.9525 27 1 -0.3633 -1.0178 -0.1421 28 1 1.6850 1.8797 0.9129 29 1 3.0841 1.3426 -0.0477 30 1 1.6080 1.9093 -0.8652 31 1 3.8214 -1.7788 1.6677 32 1 3.2827 -2.0613 -0.0052 33 1 3.8969 0.1678 -0.5434 34 1 5.9989 -1.0143 1.1514 35 1 5.6841 -1.4791 -0.5378 36 1 9.3331 -0.9986 -0.4117 37 1 -0.4938 -4.4994 -0.0571 38 1 -1.3163 -4.8272 2.2396 39 1 -0.6170 -3.2899 4.0303 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577386599.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:55 Heat of formation + Delta-G solvation = -56.936411 kcal Electronic energy + Delta-G solvation = -23037.776778 eV Core-core repulsion = 19423.408532 eV Total energy + Delta-G solvation = -3614.368246 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.140 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.08604 -49.93962 -40.54468 -38.69964 -36.46292 -34.46256 -33.05260 -31.27780 -30.22664 -28.28333 -27.81498 -24.78052 -24.06461 -23.73016 -23.28695 -21.37260 -19.11020 -18.78493 -18.33155 -17.41092 -17.11673 -16.92564 -16.56978 -16.41752 -16.36786 -15.92422 -15.73853 -15.34508 -15.14852 -14.73362 -14.52149 -14.00216 -13.79508 -13.69672 -13.58243 -13.17655 -13.13715 -12.87870 -12.79918 -12.69827 -12.47308 -12.43650 -12.19895 -11.99391 -11.56959 -11.29229 -10.67425 -9.91587 -9.72187 -9.40410 -9.09242 -8.22767 -6.34242 -0.06598 -0.01988 1.41195 1.42115 1.56262 2.34700 2.40365 2.86470 2.94261 3.10652 3.23665 3.43864 3.67028 3.80723 3.90991 4.11507 4.20437 4.24755 4.26640 4.44870 4.57291 4.64626 4.72402 4.80053 4.82907 4.87603 4.93724 5.03727 5.04613 5.09821 5.20326 5.21449 5.34870 5.59889 5.78381 5.95850 6.00133 6.11024 6.40971 6.67884 6.86972 7.36647 8.89601 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.024022 B = 0.004152 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.327169 B = 6742.338158 C = 6886.983656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.542 5.542 3 C 0.011 3.989 4 C 0.140 3.860 5 H 0.052 0.948 6 C 0.079 3.921 7 N -0.678 5.678 8 C 0.206 3.794 9 C -0.532 4.532 10 H 0.067 0.933 11 C 0.000 4.000 12 N -0.936 5.936 13 Si 0.976 3.024 14 H -0.261 1.261 15 H -0.278 1.278 16 H -0.277 1.277 17 C -0.176 4.176 18 C 0.130 3.870 19 F -0.132 7.132 20 C -0.163 4.163 21 C -0.045 4.045 22 C -0.158 4.158 23 C 0.113 3.887 24 F -0.143 7.143 25 H 0.081 0.919 26 H 0.022 0.978 27 H 0.067 0.933 28 H 0.023 0.977 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.021 0.979 33 H 0.345 0.655 34 H -0.003 1.003 35 H -0.043 1.043 36 H 0.265 0.735 37 H 0.167 0.833 38 H 0.188 0.812 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.244 -5.351 4.197 24.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.266 5.266 3 C -0.137 4.137 4 C 0.032 3.968 5 H 0.070 0.930 6 C -0.051 4.051 7 N -0.313 5.313 8 C 0.079 3.921 9 C -0.570 4.570 10 H 0.085 0.915 11 C -0.198 4.198 12 N -0.576 5.576 13 Si 0.800 3.200 14 H -0.184 1.184 15 H -0.204 1.204 16 H -0.203 1.203 17 C -0.179 4.179 18 C 0.110 3.890 19 F -0.110 7.110 20 C -0.182 4.182 21 C -0.062 4.062 22 C -0.176 4.176 23 C 0.093 3.907 24 F -0.121 7.121 25 H 0.099 0.901 26 H 0.041 0.959 27 H 0.085 0.915 28 H 0.042 0.958 29 H 0.106 0.894 30 H 0.099 0.901 31 H 0.070 0.930 32 H 0.039 0.961 33 H 0.166 0.834 34 H 0.015 0.985 35 H -0.026 1.026 36 H 0.074 0.926 37 H 0.185 0.815 38 H 0.205 0.795 39 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -22.790 -5.348 4.361 23.812 hybrid contribution 1.008 0.612 -0.281 1.212 sum -21.782 -4.736 4.080 22.662 Atomic orbital electron populations 1.22519 0.86725 1.02466 1.00514 1.62008 1.08527 1.14677 1.41363 1.22836 1.03005 0.87328 1.00506 1.20298 0.91757 0.92026 0.92758 0.93047 1.21804 0.91898 0.92967 0.98446 1.60920 1.02319 1.31372 1.36641 1.19239 0.85372 0.94082 0.93439 1.21540 0.93553 0.97410 1.44536 0.91503 1.25992 0.99443 0.98870 0.95482 1.70115 1.12496 1.24750 1.50242 0.85233 0.78124 0.78830 0.77782 1.18444 1.20393 1.20276 1.19904 1.03823 1.00695 0.93488 1.17450 0.96813 0.95830 0.78916 1.91559 1.87623 1.94806 1.37008 1.21621 0.98772 0.97477 1.00324 1.21354 0.96953 0.98213 0.89725 1.21551 0.98675 0.94108 1.03304 1.17573 0.98205 0.91313 0.83638 1.91492 1.89974 1.70034 1.60627 0.90058 0.95916 0.91484 0.95812 0.89377 0.90107 0.93001 0.96073 0.83380 0.98524 1.02564 0.92625 0.81541 0.79505 0.81310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 8.41 127.69 1.07 1.71 16 2 N -0.54 -16.94 3.90 -927.73 -3.62 -20.57 16 3 C 0.01 0.35 8.90 127.69 1.14 1.48 16 4 C 0.14 4.74 2.18 44.17 0.10 4.84 16 5 H 0.05 1.87 6.88 -2.38 -0.02 1.86 16 6 C 0.08 3.26 5.39 86.30 0.47 3.72 16 7 N -0.68 -31.66 4.96 -517.93 -2.57 -34.22 16 8 C 0.21 11.76 5.41 85.56 0.46 12.22 16 9 C -0.53 -31.42 9.32 25.60 0.24 -31.18 16 10 H 0.07 3.80 7.81 -2.91 -0.02 3.78 16 11 C 0.00 0.01 5.46 84.65 0.46 0.47 16 12 N -0.94 -58.23 13.29 21.45 0.28 -57.95 16 13 Si 0.98 45.31 29.54 68.60 2.03 47.34 16 14 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 15 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 16 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 17 C -0.18 -4.92 3.57 -19.78 -0.07 -4.99 16 18 C 0.13 3.25 4.89 22.37 0.11 3.36 16 19 F -0.13 -3.98 14.41 44.97 0.65 -3.33 16 20 C -0.16 -2.65 10.02 22.32 0.22 -2.43 16 21 C -0.04 -0.51 10.04 22.26 0.22 -0.29 16 22 C -0.16 -2.44 10.03 22.32 0.22 -2.22 16 23 C 0.11 2.73 7.24 22.37 0.16 2.89 16 24 F -0.14 -3.97 16.22 44.97 0.73 -3.24 16 25 H 0.08 1.78 8.07 -2.38 -0.02 1.76 16 26 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.07 1.64 4.81 -2.39 -0.01 1.62 16 28 H 0.02 0.70 8.09 -2.38 -0.02 0.68 16 29 H 0.09 3.22 4.50 -2.39 -0.01 3.21 16 30 H 0.08 2.12 8.10 -2.39 -0.02 2.10 16 31 H 0.05 2.22 8.08 -2.38 -0.02 2.20 16 32 H 0.02 0.90 6.88 -2.39 -0.02 0.88 16 33 H 0.34 15.54 6.07 -89.69 -0.54 15.00 16 34 H 0.00 -0.21 8.13 -2.38 -0.02 -0.23 16 35 H -0.04 -2.67 8.14 -2.39 -0.02 -2.69 16 36 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 37 H 0.17 1.84 8.06 -2.91 -0.02 1.82 16 38 H 0.19 0.52 8.06 -2.91 -0.02 0.49 16 39 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 Total: -1.00 -70.41 320.65 2.83 -67.58 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.52 Total: 14.79 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: 4.81 Total: -10.40 kcal Atomic # 7 Polarization: -106.83 SS G_CDS: -5.90 Total: -112.74 kcal Atomic # 9 Polarization: -7.95 SS G_CDS: 1.38 Total: -6.57 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -70.41 2.83 -67.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577386599.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.647 kcal (2) G-P(sol) polarization free energy of solvation -70.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds