Wall clock time and date at job start Tue Mar 31 2020 06:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46897 * 110.99691 * 2 1 4 4 C 1.46898 * 111.00028 * 123.94858 * 2 1 3 5 5 H 1.09004 * 109.47713 * 322.41271 * 4 2 1 6 6 C 1.53005 * 109.47097 * 82.41467 * 4 2 1 7 7 N 1.46895 * 109.46937 * 306.36401 * 6 4 2 8 8 C 1.46899 * 110.99922 * 188.59616 * 7 6 4 9 9 C 1.50703 * 109.47196 * 180.02562 * 8 7 6 10 10 H 1.08001 * 119.99803 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00371 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99621 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00361 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46669 * 59.99903 * 13 11 9 15 15 H 1.48498 * 109.47151 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.46999 * 299.99701 * 13 11 9 17 17 C 1.50703 * 109.47121 * 202.41294 * 4 2 1 18 18 C 1.38414 * 120.02835 * 311.98314 * 17 4 2 19 19 F 1.35105 * 120.01340 * 359.97438 * 18 17 4 20 20 C 1.38471 * 119.98011 * 180.25354 * 18 17 4 21 21 C 1.38210 * 120.01876 * 359.46637 * 20 18 17 22 22 C 1.38202 * 120.05263 * 0.30572 * 21 20 18 23 23 C 1.38422 * 120.02516 * 131.72713 * 17 4 2 24 24 F 1.35105 * 120.01144 * 0.02713 * 23 17 4 25 25 H 1.09002 * 109.47393 * 305.81432 * 1 2 3 26 26 H 1.08995 * 109.47112 * 65.82265 * 1 2 3 27 27 H 1.09003 * 109.46816 * 185.81933 * 1 2 3 28 28 H 1.09001 * 109.47356 * 193.92720 * 3 2 1 29 29 H 1.09004 * 109.47527 * 313.92391 * 3 2 1 30 30 H 1.08996 * 109.47571 * 73.92274 * 3 2 1 31 31 H 1.08998 * 109.46547 * 66.36573 * 6 4 2 32 32 H 1.08995 * 109.47184 * 186.36705 * 6 4 2 33 33 H 1.00910 * 110.99670 * 64.64452 * 7 6 4 34 34 H 1.08997 * 109.47102 * 300.00168 * 8 7 6 35 35 H 1.08993 * 109.47132 * 60.00482 * 8 7 6 36 36 H 0.97003 * 120.00123 * 180.02562 * 12 11 9 37 37 H 1.07995 * 119.99128 * 179.75096 * 20 18 17 38 38 H 1.08004 * 119.97343 * 180.27335 * 21 20 18 39 39 H 1.08003 * 119.98862 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 1 1.3654 -0.5983 2.0113 6 6 2.0004 -2.2560 0.7907 7 7 0.6588 -2.6607 0.3502 8 6 0.5706 -4.1197 0.2035 9 6 -0.8167 -4.4961 -0.2492 10 1 -1.5587 -3.7283 -0.4113 11 6 -1.1389 -5.8208 -0.4554 12 7 -0.2354 -6.7557 -0.2575 13 14 -2.8587 -6.2874 -1.0159 14 1 -3.1462 -5.6408 -2.3213 15 1 -2.9478 -7.7623 -1.1642 16 1 -3.8488 -5.8301 -0.0081 17 6 3.4017 -0.3155 1.4387 18 6 4.3249 -0.1957 0.4144 19 9 3.9659 -0.4830 -0.8560 20 6 5.6182 0.2132 0.6929 21 6 5.9844 0.5122 1.9917 22 6 5.0621 0.3975 3.0146 23 6 3.7697 -0.0162 2.7391 24 9 2.8683 -0.1283 3.7393 25 1 -0.3634 0.6013 0.8334 26 1 -0.3633 0.4209 -0.9375 27 1 -0.3633 -1.0224 0.1042 28 1 3.0568 1.3533 -0.2473 29 1 1.4600 1.9662 -0.7402 30 1 1.8599 1.8127 0.9874 31 1 2.7167 -2.4402 -0.0100 32 1 2.2832 -2.8331 1.6710 33 1 0.4042 -2.1949 -0.5080 34 1 1.2973 -4.4550 -0.5363 35 1 0.7818 -4.5945 1.1615 36 1 -0.4619 -7.6877 -0.4029 37 1 6.3398 0.3028 -0.1056 38 1 6.9921 0.8352 2.2074 39 1 5.3495 0.6310 4.0292 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577386602.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:59 Heat of formation + Delta-G solvation = -35.201564 kcal Electronic energy + Delta-G solvation = -23039.879899 eV Core-core repulsion = 19426.454147 eV Total energy + Delta-G solvation = -3613.425753 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.140 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.09740 -48.92275 -39.50441 -37.57301 -34.64439 -32.48102 -31.86975 -30.45321 -28.63842 -27.15469 -26.00904 -23.17966 -23.07143 -22.80161 -21.32092 -20.16494 -18.18306 -17.49150 -16.49842 -16.38966 -15.99658 -15.63721 -15.44864 -15.22611 -14.78670 -14.64987 -14.41862 -14.39622 -13.66628 -13.05563 -12.87306 -12.82018 -12.56143 -12.43067 -12.15350 -12.01370 -11.93277 -11.69126 -11.39860 -11.17771 -10.99685 -10.69876 -10.57496 -10.31957 -9.80776 -9.20831 -8.95250 -8.85254 -8.43934 -8.11683 -7.24510 -5.98934 -4.00863 0.79105 0.81982 3.16773 3.36588 3.40126 3.43186 3.78989 4.07247 4.28905 4.33044 4.47187 4.61014 4.66086 4.94780 5.24228 5.34486 5.36923 5.42587 5.52576 5.58081 5.71406 5.74680 5.79029 5.85165 5.89654 5.93694 5.95083 5.99064 6.20592 6.43518 6.58896 6.67074 7.20600 7.23743 7.34727 7.49805 7.81382 8.17211 8.44363 8.64881 9.07891 9.63682 11.12239 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.023927 B = 0.004160 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.946832 B = 6729.922034 C = 6895.750847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 N -0.530 5.530 3 C 0.019 3.981 4 C 0.128 3.872 5 H 0.068 0.932 6 C 0.076 3.924 7 N -0.688 5.688 8 C 0.192 3.808 9 C -0.513 4.513 10 H 0.061 0.939 11 C 0.056 3.944 12 N -0.898 5.898 13 Si 0.899 3.101 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.276 1.276 17 C -0.155 4.155 18 C 0.154 3.846 19 F -0.111 7.111 20 C -0.174 4.174 21 C -0.064 4.064 22 C -0.170 4.170 23 C 0.135 3.865 24 F -0.128 7.128 25 H 0.019 0.981 26 H 0.062 0.938 27 H 0.120 0.880 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.021 0.979 31 H 0.029 0.971 32 H 0.066 0.934 33 H 0.340 0.660 34 H -0.013 1.013 35 H 0.026 0.974 36 H 0.261 0.739 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.432 17.769 4.097 22.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 N -0.254 5.254 3 C -0.129 4.129 4 C 0.020 3.980 5 H 0.086 0.914 6 C -0.055 4.055 7 N -0.322 5.322 8 C 0.066 3.934 9 C -0.552 4.552 10 H 0.079 0.921 11 C -0.145 4.145 12 N -0.538 5.538 13 Si 0.727 3.273 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.202 1.202 17 C -0.157 4.157 18 C 0.134 3.866 19 F -0.089 7.089 20 C -0.193 4.193 21 C -0.082 4.082 22 C -0.189 4.189 23 C 0.115 3.885 24 F -0.106 7.106 25 H 0.038 0.962 26 H 0.081 0.919 27 H 0.137 0.863 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.039 0.961 31 H 0.048 0.952 32 H 0.084 0.916 33 H 0.161 0.839 34 H 0.005 0.995 35 H 0.044 0.956 36 H 0.071 0.929 37 H 0.159 0.841 38 H 0.159 0.841 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 12.273 17.297 4.265 21.634 hybrid contribution -0.796 -0.145 -0.328 0.873 sum 11.478 17.152 3.936 21.010 Atomic orbital electron populations 1.23025 0.85910 1.05944 0.99830 1.62052 1.09028 1.12560 1.41752 1.22549 1.00912 0.89762 0.99669 1.20642 0.88644 0.95391 0.93367 0.91414 1.21794 0.92868 0.91159 0.99647 1.60940 1.22608 1.10988 1.37692 1.19566 0.96503 0.81316 0.96034 1.21131 0.96962 0.92168 1.44906 0.92066 1.24982 0.97404 0.96462 0.95676 1.69958 1.33830 1.00464 1.49499 0.86548 0.84477 0.77099 0.79185 1.20254 1.21389 1.20197 1.20073 0.98272 1.05495 0.91908 1.17129 0.92189 0.97712 0.79543 1.91618 1.92120 1.90168 1.35012 1.21242 0.95043 1.04355 0.98644 1.20803 0.99489 0.96868 0.91088 1.21145 0.91813 1.04590 1.01346 1.17252 0.87332 1.00007 0.83949 1.91535 1.66652 1.93421 1.59009 0.96230 0.91881 0.86255 0.91821 0.91577 0.96093 0.95237 0.91589 0.83943 0.99503 0.95585 0.92903 0.84078 0.84109 0.84146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 8.75 60.06 0.53 0.54 16 2 N -0.53 -8.20 3.83 -244.58 -0.94 -9.14 16 3 C 0.02 0.25 8.35 60.06 0.50 0.75 16 4 C 0.13 2.08 2.12 -68.86 -0.15 1.93 16 5 H 0.07 1.17 6.97 -51.93 -0.36 0.80 16 6 C 0.08 1.47 5.39 -3.82 -0.02 1.45 16 7 N -0.69 -15.19 4.86 -115.06 -0.56 -15.75 16 8 C 0.19 5.18 5.41 -4.97 -0.03 5.15 16 9 C -0.51 -14.72 9.32 -34.44 -0.32 -15.04 16 10 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -27.26 13.29 55.43 0.74 -26.53 16 13 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 C -0.15 -2.16 3.63 -104.49 -0.38 -2.54 16 18 C 0.15 1.99 4.96 -39.43 -0.20 1.80 16 19 F -0.11 -1.66 14.24 2.25 0.03 -1.63 16 20 C -0.17 -1.68 10.03 -39.51 -0.40 -2.07 16 21 C -0.06 -0.51 10.04 -39.60 -0.40 -0.91 16 22 C -0.17 -1.60 10.02 -39.51 -0.40 -2.00 16 23 C 0.13 1.69 7.25 -39.43 -0.29 1.41 16 24 F -0.13 -1.77 16.24 2.25 0.04 -1.73 16 25 H 0.02 0.28 8.12 -51.93 -0.42 -0.14 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.12 2.12 4.48 -51.93 -0.23 1.88 16 28 H 0.06 0.81 4.76 -51.93 -0.25 0.56 16 29 H 0.07 0.78 8.03 -51.93 -0.42 0.36 16 30 H 0.02 0.26 7.98 -51.93 -0.41 -0.15 16 31 H 0.03 0.59 7.21 -51.93 -0.37 0.22 16 32 H 0.07 1.30 8.09 -51.93 -0.42 0.88 16 33 H 0.34 7.31 6.11 -39.29 -0.24 7.07 16 34 H -0.01 -0.37 8.14 -51.93 -0.42 -0.79 16 35 H 0.03 0.75 8.13 -51.93 -0.42 0.33 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.14 0.67 8.06 -52.48 -0.42 0.24 16 39 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 LS Contribution 320.51 15.07 4.83 4.83 Total: -1.00 -30.96 320.51 -7.73 -38.69 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -5.21 Total: 2.35 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -1.64 Total: -8.01 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -0.76 Total: -51.42 kcal Atomic # 9 Polarization: -3.43 SS G_CDS: 0.07 Total: -3.36 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.96 -7.73 -38.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577386602.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.492 kcal (2) G-P(sol) polarization free energy of solvation -30.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds