Wall clock time and date at job start Tue Mar 31 2020 06:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46897 * 110.99691 * 2 1 4 4 C 1.46898 * 111.00028 * 123.94858 * 2 1 3 5 5 H 1.09004 * 109.47713 * 322.41271 * 4 2 1 6 6 C 1.53005 * 109.47097 * 82.41467 * 4 2 1 7 7 N 1.46895 * 109.46937 * 306.36401 * 6 4 2 8 8 C 1.46899 * 110.99922 * 188.59616 * 7 6 4 9 9 C 1.50703 * 109.47196 * 180.02562 * 8 7 6 10 10 H 1.08001 * 119.99803 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00371 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99621 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00361 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46669 * 59.99903 * 13 11 9 15 15 H 1.48498 * 109.47151 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.46999 * 299.99701 * 13 11 9 17 17 C 1.50703 * 109.47121 * 202.41294 * 4 2 1 18 18 C 1.38414 * 120.02835 * 311.98314 * 17 4 2 19 19 F 1.35105 * 120.01340 * 359.97438 * 18 17 4 20 20 C 1.38471 * 119.98011 * 180.25354 * 18 17 4 21 21 C 1.38210 * 120.01876 * 359.46637 * 20 18 17 22 22 C 1.38202 * 120.05263 * 0.30572 * 21 20 18 23 23 C 1.38422 * 120.02516 * 131.72713 * 17 4 2 24 24 F 1.35105 * 120.01144 * 0.02713 * 23 17 4 25 25 H 1.09002 * 109.47393 * 305.81432 * 1 2 3 26 26 H 1.08995 * 109.47112 * 65.82265 * 1 2 3 27 27 H 1.09003 * 109.46816 * 185.81933 * 1 2 3 28 28 H 1.09001 * 109.47356 * 193.92720 * 3 2 1 29 29 H 1.09004 * 109.47527 * 313.92391 * 3 2 1 30 30 H 1.08996 * 109.47571 * 73.92274 * 3 2 1 31 31 H 1.08998 * 109.46547 * 66.36573 * 6 4 2 32 32 H 1.08995 * 109.47184 * 186.36705 * 6 4 2 33 33 H 1.00910 * 110.99670 * 64.64452 * 7 6 4 34 34 H 1.08997 * 109.47102 * 300.00168 * 8 7 6 35 35 H 1.08993 * 109.47132 * 60.00482 * 8 7 6 36 36 H 0.97003 * 120.00123 * 180.02562 * 12 11 9 37 37 H 1.07995 * 119.99128 * 179.75096 * 20 18 17 38 38 H 1.08004 * 119.97343 * 180.27335 * 21 20 18 39 39 H 1.08003 * 119.98862 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 1 1.3654 -0.5983 2.0113 6 6 2.0004 -2.2560 0.7907 7 7 0.6588 -2.6607 0.3502 8 6 0.5706 -4.1197 0.2035 9 6 -0.8167 -4.4961 -0.2492 10 1 -1.5587 -3.7283 -0.4113 11 6 -1.1389 -5.8208 -0.4554 12 7 -0.2354 -6.7557 -0.2575 13 14 -2.8587 -6.2874 -1.0159 14 1 -3.1462 -5.6408 -2.3213 15 1 -2.9478 -7.7623 -1.1642 16 1 -3.8488 -5.8301 -0.0081 17 6 3.4017 -0.3155 1.4387 18 6 4.3249 -0.1957 0.4144 19 9 3.9659 -0.4830 -0.8560 20 6 5.6182 0.2132 0.6929 21 6 5.9844 0.5122 1.9917 22 6 5.0621 0.3975 3.0146 23 6 3.7697 -0.0162 2.7391 24 9 2.8683 -0.1283 3.7393 25 1 -0.3634 0.6013 0.8334 26 1 -0.3633 0.4209 -0.9375 27 1 -0.3633 -1.0224 0.1042 28 1 3.0568 1.3533 -0.2473 29 1 1.4600 1.9662 -0.7402 30 1 1.8599 1.8127 0.9874 31 1 2.7167 -2.4402 -0.0100 32 1 2.2832 -2.8331 1.6710 33 1 0.4042 -2.1949 -0.5080 34 1 1.2973 -4.4550 -0.5363 35 1 0.7818 -4.5945 1.1615 36 1 -0.4619 -7.6877 -0.4029 37 1 6.3398 0.3028 -0.1056 38 1 6.9921 0.8352 2.2074 39 1 5.3495 0.6310 4.0292 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577386602.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:58 Heat of formation + Delta-G solvation = -55.216006 kcal Electronic energy + Delta-G solvation = -23040.747790 eV Core-core repulsion = 19426.454147 eV Total energy + Delta-G solvation = -3614.293644 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.140 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.08108 -49.94477 -40.53687 -38.71284 -36.46258 -34.46233 -33.05314 -31.27493 -30.22647 -28.29033 -27.81045 -24.78045 -24.06899 -23.71364 -23.29156 -21.38561 -19.10601 -18.76495 -18.33193 -17.41481 -17.11502 -16.92366 -16.56471 -16.44893 -16.37686 -15.90397 -15.73805 -15.34583 -15.10967 -14.73773 -14.53070 -13.99535 -13.79911 -13.69250 -13.57436 -13.17736 -13.12493 -12.87701 -12.80983 -12.66845 -12.51103 -12.41896 -12.19860 -11.98841 -11.55988 -11.32842 -10.65668 -9.91248 -9.72252 -9.39835 -9.10744 -8.22270 -6.34032 -0.06333 -0.01557 1.41265 1.45556 1.53357 2.34983 2.40626 2.86225 2.94403 3.10954 3.23690 3.44273 3.67537 3.80792 3.91065 4.11131 4.20512 4.24850 4.26613 4.43634 4.57143 4.63937 4.73085 4.80383 4.83427 4.87646 4.94171 5.03797 5.04467 5.09532 5.20205 5.20604 5.35663 5.59397 5.78636 5.95998 6.00316 6.11057 6.40651 6.66838 6.86582 7.36744 8.89623 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.023927 B = 0.004160 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.946832 B = 6729.922034 C = 6895.750847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 N -0.542 5.542 3 C 0.025 3.975 4 C 0.141 3.859 5 H 0.052 0.948 6 C 0.080 3.920 7 N -0.679 5.679 8 C 0.207 3.793 9 C -0.535 4.535 10 H 0.067 0.933 11 C 0.001 3.999 12 N -0.935 5.935 13 Si 0.976 3.024 14 H -0.265 1.265 15 H -0.283 1.283 16 H -0.267 1.267 17 C -0.177 4.177 18 C 0.130 3.870 19 F -0.131 7.131 20 C -0.163 4.163 21 C -0.045 4.045 22 C -0.158 4.158 23 C 0.112 3.888 24 F -0.143 7.143 25 H 0.026 0.974 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.023 0.977 31 H 0.019 0.981 32 H 0.052 0.948 33 H 0.345 0.655 34 H -0.043 1.043 35 H -0.003 1.003 36 H 0.265 0.735 37 H 0.167 0.833 38 H 0.188 0.812 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.404 19.625 4.114 24.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 N -0.266 5.266 3 C -0.123 4.123 4 C 0.032 3.968 5 H 0.070 0.930 6 C -0.050 4.050 7 N -0.313 5.313 8 C 0.079 3.921 9 C -0.573 4.573 10 H 0.085 0.915 11 C -0.197 4.197 12 N -0.576 5.576 13 Si 0.800 3.200 14 H -0.190 1.190 15 H -0.208 1.208 16 H -0.192 1.192 17 C -0.180 4.180 18 C 0.110 3.890 19 F -0.109 7.109 20 C -0.182 4.182 21 C -0.063 4.063 22 C -0.177 4.177 23 C 0.093 3.907 24 F -0.121 7.121 25 H 0.044 0.956 26 H 0.098 0.902 27 H 0.110 0.890 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.041 0.959 31 H 0.038 0.962 32 H 0.071 0.929 33 H 0.167 0.833 34 H -0.026 1.026 35 H 0.015 0.985 36 H 0.074 0.926 37 H 0.185 0.815 38 H 0.205 0.795 39 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 13.254 19.189 4.284 23.711 hybrid contribution -0.960 -0.672 -0.291 1.207 sum 12.294 18.517 3.992 22.583 Atomic orbital electron populations 1.22907 0.86060 1.04308 1.00985 1.62004 1.09034 1.14185 1.41397 1.22539 1.01271 0.88258 1.00206 1.20291 0.90666 0.93067 0.92806 0.93020 1.21789 0.90916 0.93835 0.98467 1.60917 1.24544 1.08014 1.37793 1.19230 0.95455 0.84045 0.93354 1.21480 0.97590 0.92855 1.45351 0.91488 1.25989 1.02127 0.96245 0.95364 1.70101 1.36282 1.00952 1.50215 0.85339 0.78621 0.76908 0.79136 1.18980 1.20790 1.19222 1.19913 0.97098 1.07782 0.93185 1.17437 0.93535 0.99409 0.78573 1.91564 1.92487 1.90665 1.36179 1.21619 0.93758 1.02484 1.00336 1.21352 1.00977 0.94308 0.89627 1.21548 0.90246 1.02599 1.03288 1.17584 0.88537 1.01477 0.83145 1.91494 1.67479 1.93741 1.59418 0.95563 0.90237 0.89006 0.91377 0.90159 0.95874 0.96234 0.92921 0.83346 1.02550 0.98509 0.92611 0.81518 0.79519 0.81338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 8.75 127.69 1.12 1.28 16 2 N -0.54 -16.98 3.83 -927.73 -3.56 -20.54 16 3 C 0.02 0.63 8.35 127.69 1.07 1.70 16 4 C 0.14 4.74 2.12 44.17 0.09 4.84 16 5 H 0.05 1.88 6.97 -2.38 -0.02 1.86 16 6 C 0.08 3.30 5.39 86.31 0.47 3.77 16 7 N -0.68 -31.62 4.86 -517.95 -2.52 -34.13 16 8 C 0.21 11.77 5.41 85.56 0.46 12.24 16 9 C -0.53 -31.52 9.32 25.60 0.24 -31.28 16 10 H 0.07 3.79 7.81 -2.91 -0.02 3.76 16 11 C 0.00 0.05 5.46 84.65 0.46 0.51 16 12 N -0.94 -58.19 13.29 21.45 0.28 -57.90 16 13 Si 0.98 45.22 29.54 68.60 2.03 47.25 16 14 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 15 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 17 C -0.18 -4.95 3.63 -19.78 -0.07 -5.02 16 18 C 0.13 3.26 4.96 22.37 0.11 3.37 16 19 F -0.13 -3.92 14.24 44.97 0.64 -3.28 16 20 C -0.16 -2.65 10.03 22.32 0.22 -2.42 16 21 C -0.04 -0.52 10.04 22.25 0.22 -0.30 16 22 C -0.16 -2.47 10.02 22.32 0.22 -2.25 16 23 C 0.11 2.74 7.25 22.37 0.16 2.90 16 24 F -0.14 -4.00 16.24 44.97 0.73 -3.27 16 25 H 0.03 0.75 8.12 -2.39 -0.02 0.73 16 26 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.09 3.36 4.48 -2.39 -0.01 3.35 16 28 H 0.07 1.67 4.76 -2.39 -0.01 1.66 16 29 H 0.08 1.77 8.03 -2.39 -0.02 1.75 16 30 H 0.02 0.57 7.98 -2.39 -0.02 0.55 16 31 H 0.02 0.83 7.21 -2.39 -0.02 0.82 16 32 H 0.05 2.25 8.09 -2.39 -0.02 2.23 16 33 H 0.35 15.52 6.11 -89.69 -0.55 14.97 16 34 H -0.04 -2.66 8.14 -2.39 -0.02 -2.68 16 35 H 0.00 -0.20 8.13 -2.39 -0.02 -0.22 16 36 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 37 H 0.17 1.83 8.06 -2.91 -0.02 1.81 16 38 H 0.19 0.53 8.06 -2.91 -0.02 0.51 16 39 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -70.18 320.51 2.91 -67.27 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 0.52 Total: 15.26 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: 4.78 Total: -10.66 kcal Atomic # 7 Polarization: -106.79 SS G_CDS: -5.79 Total: -112.57 kcal Atomic # 9 Polarization: -7.92 SS G_CDS: 1.37 Total: -6.54 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -70.18 2.91 -67.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577386602.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.056 kcal (2) G-P(sol) polarization free energy of solvation -70.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds