Wall clock time and date at job start Tue Mar 31 2020 05:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 119.99942 * 2 1 4 4 H 1.48495 * 109.47525 * 239.99807 * 3 2 1 5 5 H 1.48504 * 109.47463 * 359.97438 * 3 2 1 6 6 H 1.48509 * 109.47380 * 119.99898 * 3 2 1 7 7 C 1.37872 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99782 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00220 * 0.02562 * 7 2 1 10 10 C 1.53074 * 109.43927 * 59.79272 * 9 7 2 11 11 C 1.53200 * 109.29270 * 181.23706 * 10 9 7 12 12 N 1.46924 * 108.89456 * 305.57637 * 11 10 9 13 13 C 1.34775 * 120.63159 * 233.55608 * 12 11 10 14 14 O 1.21585 * 119.99810 * 354.96981 * 13 12 11 15 15 N 1.34773 * 119.99548 * 174.96204 * 13 12 11 16 16 C 1.46509 * 119.99865 * 185.07796 * 15 13 12 17 17 C 1.52996 * 109.47132 * 180.02562 * 16 15 13 18 18 C 1.52999 * 109.46695 * 179.97438 * 17 16 15 19 19 C 1.50703 * 109.47124 * 180.02562 * 18 17 16 20 20 O 1.20825 * 119.99762 * 0.02562 * 19 18 17 21 21 O 1.34225 * 120.00283 * 180.02562 * 19 18 17 22 22 C 1.46925 * 118.73744 * 53.54010 * 12 11 10 23 23 C 1.53041 * 109.46210 * 179.97438 * 9 7 2 24 24 H 0.97005 * 120.00365 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.45886 * 299.97324 * 9 7 2 26 26 H 1.08999 * 109.39304 * 61.36325 * 10 9 7 27 27 H 1.09001 * 109.62443 * 301.25182 * 10 9 7 28 28 H 1.09003 * 109.58604 * 185.71544 * 11 10 9 29 29 H 1.09006 * 109.58223 * 65.43764 * 11 10 9 30 30 H 0.97000 * 120.00552 * 5.07719 * 15 13 12 31 31 H 1.09005 * 109.46845 * 300.00179 * 16 15 13 32 32 H 1.09003 * 109.47202 * 59.99741 * 16 15 13 33 33 H 1.08989 * 109.47520 * 299.99640 * 17 16 15 34 34 H 1.09002 * 109.46741 * 60.00308 * 17 16 15 35 35 H 1.08998 * 109.47694 * 300.00233 * 18 17 16 36 36 H 1.08998 * 109.47593 * 60.00125 * 18 17 16 37 37 H 0.96703 * 117.00186 * 180.02562 * 21 19 18 38 38 H 1.08998 * 109.59207 * 66.17170 * 22 12 11 39 39 H 1.09002 * 109.59022 * 186.46095 * 22 12 11 40 40 H 1.08996 * 109.49614 * 58.67576 * 23 9 7 41 41 H 1.08998 * 109.52116 * 298.59478 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 0.3678 -2.5775 -1.2473 11 6 -0.4197 -3.8915 -1.2283 12 7 0.5228 -5.0090 -1.0817 13 6 0.5129 -6.0348 -1.9557 14 8 -0.3392 -6.0877 -2.8213 15 7 1.4477 -7.0019 -1.8701 16 6 1.5056 -8.0566 -2.8854 17 6 2.6477 -9.0198 -2.5556 18 6 2.7077 -10.1215 -3.6156 19 6 3.8322 -11.0706 -3.2906 20 8 4.5152 -10.8852 -2.3113 21 8 4.0750 -12.1220 -4.0889 22 6 1.4766 -4.9867 0.0357 23 6 2.2457 -3.6622 0.0005 24 1 -0.4851 0.8401 0.0004 25 1 0.6245 -2.5567 0.8906 26 1 0.9955 -2.5424 -2.1377 27 1 -0.3265 -1.7373 -1.2576 28 1 -0.9725 -3.9997 -2.1615 29 1 -1.1159 -3.8881 -0.3895 30 1 2.0821 -6.9998 -1.1364 31 1 0.5621 -8.6024 -2.8965 32 1 1.6781 -7.6094 -3.8644 33 1 3.5912 -8.4743 -2.5443 34 1 2.4746 -9.4669 -1.5768 35 1 1.7641 -10.6669 -3.6267 36 1 2.8805 -9.6747 -4.5947 37 1 4.8066 -12.7031 -3.8393 38 1 0.9368 -5.0710 0.9788 39 1 2.1737 -5.8190 -0.0621 40 1 2.8881 -3.5914 0.8782 41 1 2.8561 -3.6194 -0.9015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581666000.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:58 Heat of formation + Delta-G solvation = -134.049628 kcal Electronic energy + Delta-G solvation = -22290.235902 eV Core-core repulsion = 18783.611291 eV Total energy + Delta-G solvation = -3506.624611 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.63810 -39.92440 -37.14067 -36.61821 -35.59085 -33.61705 -32.79989 -31.00341 -30.08459 -27.63451 -25.96014 -23.36739 -22.83762 -22.01839 -21.21579 -20.13397 -18.81717 -18.45191 -17.65523 -16.95001 -16.75030 -16.32128 -15.74546 -15.52772 -14.59958 -14.55210 -14.24972 -13.77097 -13.47113 -13.16463 -13.05605 -12.75212 -12.58587 -12.46124 -12.17839 -11.91164 -11.90569 -11.66374 -11.26357 -11.10038 -10.98005 -10.91270 -10.67734 -10.42031 -10.05341 -9.77885 -9.54450 -9.18561 -8.99635 -8.87277 -8.35437 -7.87761 -6.00749 -4.07617 1.81816 2.55428 3.08076 3.30621 3.35859 3.38075 3.57708 4.15799 4.41932 4.46321 4.54872 4.63232 5.07209 5.16075 5.17153 5.28795 5.39283 5.45068 5.76796 5.79404 5.81097 5.90840 6.06674 6.11087 6.29335 6.43671 6.50036 6.61739 6.65293 6.82865 6.98832 7.15674 7.25287 7.48552 7.50472 7.71947 7.94237 8.07270 8.31650 8.41380 8.94925 8.95565 9.57339 11.04569 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.030477 B = 0.002871 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.515616 B = 9748.816192 C =10280.251725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.049 3.951 10 C -0.123 4.123 11 C 0.127 3.873 12 N -0.618 5.618 13 C 0.705 3.295 14 O -0.602 6.602 15 N -0.754 5.754 16 C 0.140 3.860 17 C -0.123 4.123 18 C -0.110 4.110 19 C 0.479 3.521 20 O -0.515 6.515 21 O -0.519 6.519 22 C 0.113 3.887 23 C -0.123 4.123 24 H 0.261 0.739 25 H 0.027 0.973 26 H 0.037 0.963 27 H 0.104 0.896 28 H 0.075 0.925 29 H 0.056 0.944 30 H 0.396 0.604 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.410 0.590 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.113 -20.356 -5.058 21.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.552 4.552 8 H 0.072 0.928 9 C 0.031 3.969 10 C -0.162 4.162 11 C 0.005 3.995 12 N -0.354 5.354 13 C 0.407 3.593 14 O -0.481 6.481 15 N -0.413 5.413 16 C 0.016 3.984 17 C -0.161 4.161 18 C -0.148 4.148 19 C 0.321 3.679 20 O -0.403 6.403 21 O -0.331 6.331 22 C -0.011 4.011 23 C -0.162 4.162 24 H 0.071 0.929 25 H 0.045 0.955 26 H 0.056 0.944 27 H 0.122 0.878 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.233 0.767 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.269 0.731 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.187 -19.927 -5.536 21.101 hybrid contribution 1.402 0.523 0.558 1.597 sum 5.590 -19.404 -4.978 20.797 Atomic orbital electron populations 1.69832 1.05844 1.26598 1.50615 1.24961 0.94865 0.99050 0.95090 0.86679 0.79619 0.83255 0.78545 1.20371 1.21308 1.20342 1.21147 0.92818 0.90624 1.50639 0.92823 1.18621 0.92562 0.91505 0.94211 1.22040 1.00078 0.94858 0.99205 1.21768 0.90878 0.85579 1.01297 1.47451 1.38179 1.21326 1.28461 1.15839 0.81637 0.79766 0.82078 1.90860 1.39679 1.78853 1.38748 1.45228 1.36590 1.28661 1.30816 1.21037 0.97893 0.87829 0.91675 1.21630 0.99965 0.95591 0.98937 1.21241 0.96294 0.94912 1.02342 1.23531 0.84564 0.79909 0.79877 1.90753 1.48714 1.72925 1.27875 1.84538 1.55010 1.38503 1.55075 1.21722 0.91237 0.98933 0.89165 1.22009 0.98938 0.94321 1.00913 0.92883 0.95495 0.94409 0.87805 0.90619 0.92592 0.76724 0.91519 0.91590 0.90125 0.90222 0.87074 0.87028 0.73073 0.91880 0.92247 0.92167 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.79 11.30 55.43 0.63 -24.16 16 2 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 3 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.51 -13.68 8.56 -34.44 -0.29 -13.97 16 8 H 0.05 1.41 7.74 -52.48 -0.41 1.01 16 9 C 0.05 1.17 2.06 -91.71 -0.19 0.98 16 10 C -0.12 -2.86 5.16 -26.59 -0.14 -3.00 16 11 C 0.13 2.58 6.41 -3.71 -0.02 2.55 16 12 N -0.62 -11.29 2.97 -178.49 -0.53 -11.83 16 13 C 0.71 12.67 8.30 -86.92 -0.72 11.95 16 14 O -0.60 -12.79 15.79 5.29 0.08 -12.70 16 15 N -0.75 -10.04 5.47 -65.22 -0.36 -10.40 16 16 C 0.14 1.47 5.68 -4.04 -0.02 1.44 16 17 C -0.12 -0.96 4.62 -26.73 -0.12 -1.09 16 18 C -0.11 -0.65 5.81 -27.88 -0.16 -0.81 16 19 C 0.48 3.69 8.33 36.01 0.30 3.99 16 20 O -0.51 -5.77 16.74 -18.75 -0.31 -6.09 16 21 O -0.52 -2.95 13.42 -39.25 -0.53 -3.47 16 22 C 0.11 1.81 6.43 -3.71 -0.02 1.78 16 23 C -0.12 -2.37 5.30 -26.61 -0.14 -2.51 16 24 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 25 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.10 2.68 6.03 -51.93 -0.31 2.37 16 28 H 0.08 1.58 7.03 -51.93 -0.37 1.21 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.40 4.51 5.93 -40.82 -0.24 4.27 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.69 8.10 -51.94 -0.42 0.27 16 34 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 35 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.41 0.76 9.10 45.56 0.41 1.18 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.06 0.75 5.56 -51.93 -0.29 0.47 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 335.85 15.07 5.06 5.06 Total: -1.00 -33.58 335.85 -8.02 -41.59 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -5.40 Total: 3.15 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -1.63 Total: 2.89 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: -0.26 Total: -46.38 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.76 Total: -22.26 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.58 -8.02 -41.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581666000.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.457 kcal (2) G-P(sol) polarization free energy of solvation -33.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds