Wall clock time and date at job start Tue Mar 31 2020 05:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 119.99942 * 2 1 4 4 H 1.48495 * 109.47525 * 239.99807 * 3 2 1 5 5 H 1.48504 * 109.47463 * 359.97438 * 3 2 1 6 6 H 1.48509 * 109.47380 * 119.99898 * 3 2 1 7 7 C 1.37872 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99782 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00220 * 0.02562 * 7 2 1 10 10 C 1.53074 * 109.43927 * 59.79272 * 9 7 2 11 11 C 1.53200 * 109.29270 * 181.23706 * 10 9 7 12 12 N 1.46924 * 108.89456 * 305.57637 * 11 10 9 13 13 C 1.34775 * 120.63159 * 233.55608 * 12 11 10 14 14 O 1.21585 * 119.99810 * 354.96981 * 13 12 11 15 15 N 1.34773 * 119.99548 * 174.96204 * 13 12 11 16 16 C 1.46509 * 119.99865 * 185.07796 * 15 13 12 17 17 C 1.52996 * 109.47132 * 180.02562 * 16 15 13 18 18 C 1.52999 * 109.46695 * 179.97438 * 17 16 15 19 19 C 1.50703 * 109.47124 * 180.02562 * 18 17 16 20 20 O 1.20825 * 119.99762 * 0.02562 * 19 18 17 21 21 O 1.34225 * 120.00283 * 180.02562 * 19 18 17 22 22 C 1.46925 * 118.73744 * 53.54010 * 12 11 10 23 23 C 1.53041 * 109.46210 * 179.97438 * 9 7 2 24 24 H 0.97005 * 120.00365 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.45886 * 299.97324 * 9 7 2 26 26 H 1.08999 * 109.39304 * 61.36325 * 10 9 7 27 27 H 1.09001 * 109.62443 * 301.25182 * 10 9 7 28 28 H 1.09003 * 109.58604 * 185.71544 * 11 10 9 29 29 H 1.09006 * 109.58223 * 65.43764 * 11 10 9 30 30 H 0.97000 * 120.00552 * 5.07719 * 15 13 12 31 31 H 1.09005 * 109.46845 * 300.00179 * 16 15 13 32 32 H 1.09003 * 109.47202 * 59.99741 * 16 15 13 33 33 H 1.08989 * 109.47520 * 299.99640 * 17 16 15 34 34 H 1.09002 * 109.46741 * 60.00308 * 17 16 15 35 35 H 1.08998 * 109.47694 * 300.00233 * 18 17 16 36 36 H 1.08998 * 109.47593 * 60.00125 * 18 17 16 37 37 H 0.96703 * 117.00186 * 180.02562 * 21 19 18 38 38 H 1.08998 * 109.59207 * 66.17170 * 22 12 11 39 39 H 1.09002 * 109.59022 * 186.46095 * 22 12 11 40 40 H 1.08996 * 109.49614 * 58.67576 * 23 9 7 41 41 H 1.08998 * 109.52116 * 298.59478 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2126 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 0.3678 -2.5775 -1.2473 11 6 -0.4197 -3.8915 -1.2283 12 7 0.5228 -5.0090 -1.0817 13 6 0.5129 -6.0348 -1.9557 14 8 -0.3392 -6.0877 -2.8213 15 7 1.4477 -7.0019 -1.8701 16 6 1.5056 -8.0566 -2.8854 17 6 2.6477 -9.0198 -2.5556 18 6 2.7077 -10.1215 -3.6156 19 6 3.8322 -11.0706 -3.2906 20 8 4.5152 -10.8852 -2.3113 21 8 4.0750 -12.1220 -4.0889 22 6 1.4766 -4.9867 0.0357 23 6 2.2457 -3.6622 0.0005 24 1 -0.4851 0.8401 0.0004 25 1 0.6245 -2.5567 0.8906 26 1 0.9955 -2.5424 -2.1377 27 1 -0.3265 -1.7373 -1.2576 28 1 -0.9725 -3.9997 -2.1615 29 1 -1.1159 -3.8881 -0.3895 30 1 2.0821 -6.9998 -1.1364 31 1 0.5621 -8.6024 -2.8965 32 1 1.6781 -7.6094 -3.8644 33 1 3.5912 -8.4743 -2.5443 34 1 2.4746 -9.4669 -1.5768 35 1 1.7641 -10.6669 -3.6267 36 1 2.8805 -9.6747 -4.5947 37 1 4.8066 -12.7031 -3.8393 38 1 0.9368 -5.0710 0.9788 39 1 2.1737 -5.8190 -0.0621 40 1 2.8881 -3.5914 0.8782 41 1 2.8561 -3.6194 -0.9015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581666000.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:57 Heat of formation + Delta-G solvation = -157.283947 kcal Electronic energy + Delta-G solvation = -22291.243418 eV Core-core repulsion = 18783.611291 eV Total energy + Delta-G solvation = -3507.632126 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.39939 -41.14397 -38.61975 -37.26020 -36.58635 -35.37090 -33.87786 -32.73725 -31.63762 -28.66286 -27.60288 -24.80928 -24.11605 -23.38117 -21.94370 -21.55890 -20.25177 -19.22867 -18.87628 -18.28662 -17.70756 -17.35674 -16.95092 -16.61025 -16.52025 -15.59744 -15.40554 -15.21906 -14.88696 -14.55553 -14.23626 -14.06643 -13.99596 -13.39398 -13.36050 -13.24699 -12.95738 -12.78274 -12.51288 -12.49934 -12.44617 -12.14383 -11.92833 -11.90058 -11.61092 -11.41692 -11.31530 -10.93188 -10.79027 -10.39421 -10.16587 -9.36268 -8.06093 -6.20098 1.26194 1.43049 1.43912 1.51102 1.66922 2.17124 2.24126 2.44915 2.98687 3.20317 3.85524 3.95587 4.00903 4.11983 4.26781 4.34263 4.51461 4.53590 4.56098 4.61326 4.71073 4.74497 4.76343 4.92167 4.99698 5.11073 5.17867 5.20746 5.26060 5.48461 5.51568 5.55241 5.66839 5.68587 5.99731 6.08443 6.14178 6.39863 6.91356 7.01427 7.03658 7.47920 7.58018 8.97099 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.030477 B = 0.002871 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.515616 B = 9748.816192 C =10280.251725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.013 3.987 3 Si 0.950 3.050 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.533 4.533 8 H 0.052 0.948 9 C 0.045 3.955 10 C -0.111 4.111 11 C 0.139 3.861 12 N -0.623 5.623 13 C 0.701 3.299 14 O -0.638 6.638 15 N -0.738 5.738 16 C 0.139 3.861 17 C -0.111 4.111 18 C -0.108 4.108 19 C 0.484 3.516 20 O -0.556 6.556 21 O -0.516 6.516 22 C 0.117 3.883 23 C -0.115 4.115 24 H 0.260 0.740 25 H 0.003 0.997 26 H 0.021 0.979 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.407 0.593 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.427 0.573 38 H 0.074 0.926 39 H 0.101 0.899 40 H 0.073 0.927 41 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.367 -22.034 -5.168 23.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.186 4.186 3 Si 0.776 3.224 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.195 1.195 7 C -0.571 4.571 8 H 0.071 0.929 9 C 0.027 3.973 10 C -0.150 4.150 11 C 0.016 3.984 12 N -0.359 5.359 13 C 0.403 3.597 14 O -0.521 6.521 15 N -0.397 5.397 16 C 0.015 3.985 17 C -0.149 4.149 18 C -0.146 4.146 19 C 0.329 3.671 20 O -0.447 6.447 21 O -0.329 6.329 22 C -0.005 4.005 23 C -0.154 4.154 24 H 0.069 0.931 25 H 0.021 0.979 26 H 0.040 0.960 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.246 0.754 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.288 0.712 38 H 0.092 0.908 39 H 0.119 0.881 40 H 0.091 0.909 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.491 -21.661 -5.643 23.048 hybrid contribution 1.030 0.988 0.552 1.531 sum 6.521 -20.673 -5.091 22.267 Atomic orbital electron populations 1.69970 1.07044 1.27137 1.51348 1.25709 0.95656 1.02247 0.94997 0.85737 0.78448 0.79499 0.78695 1.20079 1.21194 1.19536 1.21561 0.93046 0.92174 1.50308 0.92935 1.18606 0.93119 0.92559 0.93064 1.21794 0.99327 0.95550 0.98340 1.21406 0.90866 0.85107 1.01008 1.47398 1.38258 1.20915 1.29331 1.16007 0.82028 0.80283 0.81396 1.90834 1.41347 1.79760 1.40110 1.45172 1.35172 1.27851 1.31498 1.21209 0.99113 0.87397 0.90770 1.21478 0.98363 0.95421 0.99627 1.21274 0.96673 0.94287 1.02316 1.23776 0.84189 0.80045 0.79133 1.90744 1.50311 1.74013 1.29652 1.84505 1.55748 1.38217 1.54456 1.21811 0.91309 0.98517 0.88882 1.21862 0.98113 0.94210 1.01192 0.93054 0.97873 0.96012 0.90872 0.91449 0.92320 0.75401 0.91321 0.91883 0.90662 0.90272 0.85063 0.85324 0.71184 0.90795 0.88092 0.90889 0.93497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.15 11.30 21.44 0.24 -51.91 16 2 C 0.01 0.69 5.30 84.65 0.45 1.14 16 3 Si 0.95 43.22 29.54 68.60 2.03 45.25 16 4 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 7 C -0.53 -28.60 8.56 25.60 0.22 -28.38 16 8 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 9 C 0.05 2.16 2.06 -11.50 -0.02 2.13 16 10 C -0.11 -5.31 5.16 30.69 0.16 -5.15 16 11 C 0.14 5.73 6.41 86.37 0.55 6.28 16 12 N -0.62 -22.05 2.97 -836.88 -2.49 -24.54 16 13 C 0.70 24.20 8.30 179.06 1.49 25.68 16 14 O -0.64 -26.73 15.79 -3.99 -0.06 -26.79 16 15 N -0.74 -17.89 5.47 -478.52 -2.62 -20.51 16 16 C 0.14 2.58 5.68 86.38 0.49 3.07 16 17 C -0.11 -1.46 4.62 30.59 0.14 -1.32 16 18 C -0.11 -0.98 5.81 29.85 0.17 -0.80 16 19 C 0.48 6.42 8.33 71.24 0.59 7.01 16 20 O -0.56 -11.67 16.74 21.97 0.37 -11.30 16 21 O -0.52 -4.62 13.42 -51.37 -0.69 -5.31 16 22 C 0.12 3.48 6.43 86.37 0.56 4.04 16 23 C -0.12 -4.29 5.30 30.67 0.16 -4.12 16 24 H 0.26 14.23 8.31 -92.70 -0.77 13.46 16 25 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 26 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.07 3.94 6.03 -2.39 -0.01 3.93 16 28 H 0.07 2.87 7.03 -2.39 -0.02 2.85 16 29 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 30 H 0.41 7.94 5.93 -92.71 -0.55 7.39 16 31 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.07 1.10 8.10 -2.39 -0.02 1.09 16 34 H 0.08 1.08 8.10 -2.39 -0.02 1.06 16 35 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.13 0.77 8.14 -2.39 -0.02 0.76 16 37 H 0.43 0.69 9.10 -74.06 -0.67 0.01 16 38 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.10 2.17 5.56 -2.39 -0.01 2.16 16 40 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 41 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -73.54 335.85 1.56 -71.97 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -0.17 Total: 13.55 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: 4.96 Total: 9.59 kcal Atomic # 7 Polarization: -92.09 SS G_CDS: -4.86 Total: -96.96 kcal Atomic # 8 Polarization: -43.02 SS G_CDS: -0.38 Total: -43.40 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -73.54 1.56 -71.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581666000.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.310 kcal (2) G-P(sol) polarization free energy of solvation -73.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds