Wall clock time and date at job start Tue Mar 31 2020 06:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86806 * 119.99690 * 2 1 4 4 H 1.48507 * 109.46847 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47196 * 300.00057 * 3 2 1 6 6 H 1.48499 * 109.47163 * 60.00522 * 3 2 1 7 7 C 1.38808 * 120.00425 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00177 * 201.59485 * 7 2 1 9 9 N 1.36935 * 119.99556 * 21.59054 * 7 2 1 10 10 C 1.46507 * 120.00326 * 36.74711 * 9 7 2 11 11 C 1.50699 * 109.46914 * 89.99694 * 10 9 7 12 12 C 1.38833 * 119.74013 * 270.30063 * 11 10 9 13 13 C 1.37745 * 120.66722 * 180.29517 * 12 11 10 14 14 C 1.39119 * 119.78004 * 359.70448 * 13 12 11 15 15 N 1.37692 * 133.50788 * 180.02562 * 14 13 12 16 16 H 0.96993 * 125.06075 * 359.97438 * 15 14 13 17 17 C 1.36834 * 109.87316 * 179.97438 * 15 14 13 18 18 C 1.34236 * 109.93054 * 0.02562 * 17 15 14 19 19 C 1.40667 * 119.33612 * 359.97438 * 14 13 12 20 20 C 1.36629 * 119.73388 * 90.00357 * 11 10 9 21 21 C 1.46502 * 120.00009 * 216.74429 * 9 7 2 22 22 C 1.54265 * 110.03072 * 62.53208 * 21 9 7 23 23 C 1.54966 * 104.16238 * 217.13454 * 22 21 9 24 24 C 1.54892 * 102.77300 * 37.88816 * 23 22 21 25 25 C 1.53874 * 110.03288 * 305.31909 * 21 9 7 26 26 H 0.97005 * 119.99940 * 354.92080 * 1 2 3 27 27 H 1.08997 * 109.46908 * 329.99707 * 10 9 7 28 28 H 1.08994 * 109.47011 * 209.99678 * 10 9 7 29 29 H 1.08005 * 119.66487 * 0.02562 * 12 11 10 30 30 H 1.07998 * 120.10901 * 179.72006 * 13 12 11 31 31 H 1.08000 * 125.03341 * 179.97438 * 17 15 14 32 32 H 1.08005 * 126.50296 * 179.97438 * 18 17 15 33 33 H 1.08002 * 120.11898 * 359.97438 * 20 11 10 34 34 H 1.08997 * 110.01686 * 183.92154 * 21 9 7 35 35 H 1.09004 * 110.48700 * 335.78775 * 22 21 9 36 36 H 1.09008 * 110.48644 * 98.42911 * 22 21 9 37 37 H 1.08993 * 110.72217 * 279.57736 * 23 22 21 38 38 H 1.09003 * 110.92077 * 156.29093 * 23 22 21 39 39 H 1.09001 * 110.48528 * 203.40369 * 24 23 22 40 40 H 1.09006 * 110.59393 * 80.81834 * 24 23 22 41 41 H 1.09001 * 110.02862 * 238.56505 * 25 21 9 42 42 H 1.08993 * 110.03334 * 359.97438 * 25 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0335 -1.2350 0.3437 9 7 1.3977 -2.3461 -0.4374 10 6 0.4623 -2.2920 -1.5637 11 6 1.2148 -2.5034 -2.8522 12 6 1.7423 -1.4119 -3.5287 13 6 2.4282 -1.5825 -4.7110 14 6 2.6006 -2.8612 -5.2314 15 7 3.2206 -3.3498 -6.3596 16 1 3.6748 -2.8088 -7.0243 17 6 3.1005 -4.7121 -6.4033 18 6 2.4156 -5.1456 -5.3333 19 6 2.0700 -3.9645 -4.5387 20 6 1.3776 -3.7684 -3.3421 21 6 1.6777 -3.6244 0.2213 22 6 1.2266 -3.5691 1.6955 23 6 2.3076 -4.3803 2.4536 24 6 3.6114 -3.9864 1.7158 25 6 3.1933 -3.8900 0.2341 26 1 -0.4850 0.8368 0.0744 27 1 -0.0261 -1.3178 -1.5838 28 1 -0.2893 -3.0730 -1.4496 29 1 1.6099 -0.4185 -3.1261 30 1 2.8309 -0.7266 -5.2321 31 1 3.4972 -5.3448 -7.1835 32 1 2.1670 -6.1709 -5.1017 33 1 0.9689 -4.6133 -2.8077 34 1 1.1614 -4.4323 -0.2971 35 1 1.2051 -2.5383 2.0495 36 1 0.2476 -4.0341 1.8126 37 1 2.1209 -5.4503 2.3632 38 1 2.3525 -4.0845 3.5017 39 1 4.3720 -4.7558 1.8483 40 1 3.9778 -3.0236 2.0723 41 1 3.4124 -4.8272 -0.2774 42 1 3.7205 -3.0681 -0.2502 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589821194.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:22 Heat of formation + Delta-G solvation = 69.214232 kcal Electronic energy + Delta-G solvation = -22644.555526 eV Core-core repulsion = 19589.887111 eV Total energy + Delta-G solvation = -3054.668414 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.70104 -37.84111 -36.53709 -33.97672 -31.54730 -31.01399 -29.40630 -28.22310 -27.77473 -26.53118 -25.24489 -22.63975 -21.78712 -20.59982 -19.86481 -19.75975 -18.99650 -17.53823 -16.27624 -15.67945 -15.24445 -14.66095 -14.33275 -14.05456 -14.02542 -13.65036 -13.35580 -13.08076 -12.90024 -12.67321 -12.46552 -12.07850 -11.58047 -11.20230 -11.09549 -10.82829 -10.73250 -10.40115 -10.36316 -10.29089 -10.19474 -10.16451 -9.97029 -9.76978 -9.73414 -9.41288 -9.25021 -8.43845 -7.52335 -7.19486 -6.45629 -5.75981 -3.26642 1.70953 2.30640 3.10618 3.35349 3.45366 3.47164 3.48498 4.46678 4.60380 5.08500 5.28188 5.32658 5.49131 5.53459 5.54393 5.57900 5.78396 5.86581 5.95866 6.00973 6.15256 6.21934 6.34402 6.39345 6.42444 6.46812 6.53848 6.63552 6.63931 6.69025 6.71432 6.85792 6.94416 7.05340 7.14193 7.18344 7.26696 7.30393 7.44331 7.53269 7.74152 7.85129 7.88997 7.93033 8.60639 9.25091 9.88811 10.47120 11.26507 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.013789 B = 0.006578 C = 0.005041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.058239 B = 4255.721335 C = 5553.088568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.012 3.988 3 Si 0.887 3.113 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.291 1.291 7 C -0.241 4.241 8 H 0.061 0.939 9 N -0.569 5.569 10 C 0.176 3.824 11 C -0.090 4.090 12 C -0.065 4.065 13 C -0.146 4.146 14 C 0.080 3.920 15 N -0.603 5.603 16 H 0.408 0.592 17 C 0.033 3.967 18 C -0.207 4.207 19 C -0.111 4.111 20 C -0.079 4.079 21 C 0.173 3.827 22 C -0.130 4.130 23 C -0.123 4.123 24 C -0.117 4.117 25 C -0.132 4.132 26 H 0.254 0.746 27 H 0.105 0.895 28 H 0.031 0.969 29 H 0.123 0.877 30 H 0.108 0.892 31 H 0.161 0.839 32 H 0.138 0.862 33 H 0.110 0.890 34 H 0.047 0.953 35 H 0.084 0.916 36 H 0.044 0.956 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.046 0.954 40 H 0.061 0.939 41 H 0.042 0.958 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.395 -7.913 -7.953 12.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.187 4.187 3 Si 0.717 3.283 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.218 1.218 7 C -0.371 4.371 8 H 0.078 0.922 9 N -0.287 5.287 10 C 0.050 3.950 11 C -0.094 4.094 12 C -0.085 4.085 13 C -0.167 4.167 14 C -0.026 4.026 15 N -0.207 5.207 16 H 0.243 0.757 17 C -0.093 4.093 18 C -0.233 4.233 19 C -0.115 4.115 20 C -0.098 4.098 21 C 0.066 3.934 22 C -0.170 4.170 23 C -0.161 4.161 24 C -0.155 4.155 25 C -0.171 4.171 26 H 0.065 0.935 27 H 0.122 0.878 28 H 0.049 0.951 29 H 0.141 0.859 30 H 0.126 0.874 31 H 0.178 0.822 32 H 0.156 0.844 33 H 0.128 0.872 34 H 0.065 0.935 35 H 0.102 0.898 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.061 0.939 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.317 -7.715 -8.080 11.977 hybrid contribution 0.854 1.108 -0.383 1.450 sum 5.170 -6.607 -8.463 11.917 Atomic orbital electron populations 1.69893 1.05405 1.25675 1.52259 1.25103 0.94935 0.98271 1.00440 0.86460 0.79948 0.84534 0.77357 1.20164 1.21477 1.21789 1.18932 0.94443 0.85112 1.38580 0.92184 1.43886 1.51440 1.02789 1.30578 1.20039 0.90014 1.03188 0.81720 1.20757 0.99267 0.91721 0.97674 1.20854 0.95545 0.99560 0.92535 1.19970 1.05293 0.92876 0.98534 1.18202 1.00228 0.94928 0.89199 1.41682 1.50600 1.06541 1.21890 0.75651 1.21604 1.03578 0.83307 1.00775 1.21638 1.07226 0.97568 0.96843 1.19183 1.03226 0.92250 0.96886 1.20127 0.98960 0.96893 0.93865 1.21018 0.92445 0.88382 0.91555 1.22830 0.95965 1.01021 0.97161 1.22442 0.96457 0.98883 0.98362 1.22248 0.96554 1.00129 0.96572 1.22541 0.99136 1.00261 0.95184 0.93545 0.87795 0.95061 0.85873 0.87379 0.82181 0.84399 0.87203 0.93489 0.89759 0.93715 0.92940 0.92962 0.93561 0.92054 0.93885 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.39 11.42 55.49 0.63 -23.76 16 2 C 0.01 0.32 4.96 -17.43 -0.09 0.23 16 3 Si 0.89 21.01 29.61 -169.99 -5.03 15.98 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.24 -6.19 7.80 -15.06 -0.12 -6.30 16 8 H 0.06 1.59 6.93 -52.49 -0.36 1.23 16 9 N -0.57 -13.38 2.37 -165.75 -0.39 -13.78 16 10 C 0.18 4.03 5.36 -5.19 -0.03 4.01 16 11 C -0.09 -1.88 5.43 -104.98 -0.57 -2.45 16 12 C -0.07 -1.32 9.66 -39.54 -0.38 -1.71 16 13 C -0.15 -2.60 10.08 -39.43 -0.40 -3.00 16 14 C 0.08 1.37 7.28 -83.99 -0.61 0.76 16 15 N -0.60 -7.97 6.07 -10.65 -0.06 -8.04 16 16 H 0.41 4.02 8.96 -40.82 -0.37 3.65 16 17 C 0.03 0.41 11.82 -16.73 -0.20 0.21 16 18 C -0.21 -3.04 11.08 -37.67 -0.42 -3.45 16 19 C -0.11 -2.00 6.37 -105.14 -0.67 -2.67 16 20 C -0.08 -1.51 9.67 -39.64 -0.38 -1.89 16 21 C 0.17 3.60 3.41 -66.81 -0.23 3.37 16 22 C -0.13 -2.61 6.43 -25.03 -0.16 -2.77 16 23 C -0.12 -2.07 6.91 -24.70 -0.17 -2.24 16 24 C -0.12 -2.02 6.83 -25.07 -0.17 -2.19 16 25 C -0.13 -2.54 6.14 -25.62 -0.16 -2.70 16 26 H 0.25 6.80 8.32 -40.82 -0.34 6.46 16 27 H 0.10 2.67 5.40 -51.93 -0.28 2.39 16 28 H 0.03 0.69 7.90 -51.93 -0.41 0.28 16 29 H 0.12 2.63 8.06 -52.48 -0.42 2.21 16 30 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.14 1.73 8.06 -52.48 -0.42 1.31 16 33 H 0.11 1.98 8.06 -52.49 -0.42 1.56 16 34 H 0.05 0.94 7.86 -51.93 -0.41 0.53 16 35 H 0.08 1.97 7.22 -51.93 -0.38 1.59 16 36 H 0.04 0.86 8.14 -51.92 -0.42 0.44 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 1.56 6.70 -51.93 -0.35 1.21 16 LS Contribution 338.45 15.07 5.10 5.10 Total: -1.00 -28.57 338.45 -10.84 -39.41 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -6.34 Total: 7.88 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: -4.75 Total: -22.80 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: 0.18 Total: -45.57 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.57 -10.84 -39.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589821194.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.628 kcal (2) G-P(sol) polarization free energy of solvation -28.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds