Wall clock time and date at job start Tue Mar 31 2020 06:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86806 * 119.99690 * 2 1 4 4 H 1.48507 * 109.46847 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47196 * 300.00057 * 3 2 1 6 6 H 1.48499 * 109.47163 * 60.00522 * 3 2 1 7 7 C 1.38808 * 120.00425 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00177 * 201.59485 * 7 2 1 9 9 N 1.36935 * 119.99556 * 21.59054 * 7 2 1 10 10 C 1.46507 * 120.00326 * 36.74711 * 9 7 2 11 11 C 1.50699 * 109.46914 * 89.99694 * 10 9 7 12 12 C 1.38833 * 119.74013 * 270.30063 * 11 10 9 13 13 C 1.37745 * 120.66722 * 180.29517 * 12 11 10 14 14 C 1.39119 * 119.78004 * 359.70448 * 13 12 11 15 15 N 1.37692 * 133.50788 * 180.02562 * 14 13 12 16 16 H 0.96993 * 125.06075 * 359.97438 * 15 14 13 17 17 C 1.36834 * 109.87316 * 179.97438 * 15 14 13 18 18 C 1.34236 * 109.93054 * 0.02562 * 17 15 14 19 19 C 1.40667 * 119.33612 * 359.97438 * 14 13 12 20 20 C 1.36629 * 119.73388 * 90.00357 * 11 10 9 21 21 C 1.46502 * 120.00009 * 216.74429 * 9 7 2 22 22 C 1.54265 * 110.03072 * 62.53208 * 21 9 7 23 23 C 1.54966 * 104.16238 * 217.13454 * 22 21 9 24 24 C 1.54892 * 102.77300 * 37.88816 * 23 22 21 25 25 C 1.53874 * 110.03288 * 305.31909 * 21 9 7 26 26 H 0.97005 * 119.99940 * 354.92080 * 1 2 3 27 27 H 1.08997 * 109.46908 * 329.99707 * 10 9 7 28 28 H 1.08994 * 109.47011 * 209.99678 * 10 9 7 29 29 H 1.08005 * 119.66487 * 0.02562 * 12 11 10 30 30 H 1.07998 * 120.10901 * 179.72006 * 13 12 11 31 31 H 1.08000 * 125.03341 * 179.97438 * 17 15 14 32 32 H 1.08005 * 126.50296 * 179.97438 * 18 17 15 33 33 H 1.08002 * 120.11898 * 359.97438 * 20 11 10 34 34 H 1.08997 * 110.01686 * 183.92154 * 21 9 7 35 35 H 1.09004 * 110.48700 * 335.78775 * 22 21 9 36 36 H 1.09008 * 110.48644 * 98.42911 * 22 21 9 37 37 H 1.08993 * 110.72217 * 279.57736 * 23 22 21 38 38 H 1.09003 * 110.92077 * 156.29093 * 23 22 21 39 39 H 1.09001 * 110.48528 * 203.40369 * 24 23 22 40 40 H 1.09006 * 110.59393 * 80.81834 * 24 23 22 41 41 H 1.09001 * 110.02862 * 238.56505 * 25 21 9 42 42 H 1.08993 * 110.03334 * 359.97438 * 25 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0335 -1.2350 0.3437 9 7 1.3977 -2.3461 -0.4374 10 6 0.4623 -2.2920 -1.5637 11 6 1.2148 -2.5034 -2.8522 12 6 1.7423 -1.4119 -3.5287 13 6 2.4282 -1.5825 -4.7110 14 6 2.6006 -2.8612 -5.2314 15 7 3.2206 -3.3498 -6.3596 16 1 3.6748 -2.8088 -7.0243 17 6 3.1005 -4.7121 -6.4033 18 6 2.4156 -5.1456 -5.3333 19 6 2.0700 -3.9645 -4.5387 20 6 1.3776 -3.7684 -3.3421 21 6 1.6777 -3.6244 0.2213 22 6 1.2266 -3.5691 1.6955 23 6 2.3076 -4.3803 2.4536 24 6 3.6114 -3.9864 1.7158 25 6 3.1933 -3.8900 0.2341 26 1 -0.4850 0.8368 0.0744 27 1 -0.0261 -1.3178 -1.5838 28 1 -0.2893 -3.0730 -1.4496 29 1 1.6099 -0.4185 -3.1261 30 1 2.8309 -0.7266 -5.2321 31 1 3.4972 -5.3448 -7.1835 32 1 2.1670 -6.1709 -5.1017 33 1 0.9689 -4.6133 -2.8077 34 1 1.1614 -4.4323 -0.2971 35 1 1.2051 -2.5383 2.0495 36 1 0.2476 -4.0341 1.8126 37 1 2.1209 -5.4503 2.3632 38 1 2.3525 -4.0845 3.5017 39 1 4.3720 -4.7558 1.8483 40 1 3.9778 -3.0236 2.0723 41 1 3.4124 -4.8272 -0.2774 42 1 3.7205 -3.0681 -0.2502 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589821194.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:21 Heat of formation + Delta-G solvation = 55.749664 kcal Electronic energy + Delta-G solvation = -22645.139393 eV Core-core repulsion = 19589.887111 eV Total energy + Delta-G solvation = -3055.252282 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.93860 -39.46951 -37.96673 -35.70947 -33.15351 -32.59566 -30.90438 -29.48972 -29.32588 -28.18268 -27.02561 -24.27908 -23.27434 -21.88349 -21.30106 -21.09939 -20.73424 -18.77426 -18.13387 -17.20480 -16.76414 -16.36761 -16.00610 -15.67179 -15.33348 -14.98232 -14.97330 -14.51821 -14.50382 -14.04003 -13.84757 -13.38081 -13.26563 -13.01310 -12.81624 -12.66075 -12.38660 -12.01029 -11.93319 -11.90773 -11.77997 -11.70236 -11.67423 -11.44261 -11.30639 -11.11608 -10.53888 -10.43696 -8.89531 -8.47731 -8.39188 -7.76091 -5.29529 0.36493 0.85169 1.41989 1.46975 1.55180 1.96070 2.39402 2.53453 3.07840 3.32508 3.82559 3.93404 4.01970 4.05023 4.13345 4.33940 4.36397 4.45124 4.56166 4.64718 4.73058 4.79925 4.80794 4.95979 4.97710 4.98989 5.02973 5.10538 5.21904 5.24447 5.27177 5.33963 5.34745 5.56079 5.63515 5.66273 5.73385 5.74214 5.87541 5.93231 5.95572 6.14632 6.40422 6.60930 6.86710 7.26494 7.98016 8.50825 9.23391 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.013789 B = 0.006578 C = 0.005041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.058239 B = 4255.721335 C = 5553.088568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.030 4.030 3 Si 0.938 3.062 4 H -0.274 1.274 5 H -0.290 1.290 6 H -0.293 1.293 7 C -0.232 4.232 8 H 0.049 0.951 9 N -0.579 5.579 10 C 0.183 3.817 11 C -0.106 4.106 12 C -0.097 4.097 13 C -0.136 4.136 14 C 0.067 3.933 15 N -0.590 5.590 16 H 0.427 0.573 17 C 0.067 3.933 18 C -0.236 4.236 19 C -0.128 4.128 20 C -0.086 4.086 21 C 0.165 3.835 22 C -0.129 4.129 23 C -0.111 4.111 24 C -0.113 4.113 25 C -0.124 4.124 26 H 0.250 0.750 27 H 0.072 0.928 28 H 0.028 0.972 29 H 0.098 0.902 30 H 0.132 0.868 31 H 0.215 0.785 32 H 0.157 0.843 33 H 0.114 0.886 34 H 0.053 0.947 35 H 0.043 0.957 36 H 0.047 0.953 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.045 0.955 41 H 0.060 0.940 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.511 -10.354 -9.873 15.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.227 4.227 3 Si 0.767 3.233 4 H -0.199 1.199 5 H -0.216 1.216 6 H -0.220 1.220 7 C -0.362 4.362 8 H 0.066 0.934 9 N -0.298 5.298 10 C 0.057 3.943 11 C -0.110 4.110 12 C -0.117 4.117 13 C -0.157 4.157 14 C -0.040 4.040 15 N -0.195 5.195 16 H 0.266 0.734 17 C -0.059 4.059 18 C -0.261 4.261 19 C -0.132 4.132 20 C -0.105 4.105 21 C 0.058 3.942 22 C -0.168 4.168 23 C -0.149 4.149 24 C -0.151 4.151 25 C -0.163 4.163 26 H 0.059 0.941 27 H 0.090 0.910 28 H 0.047 0.953 29 H 0.117 0.883 30 H 0.149 0.851 31 H 0.231 0.769 32 H 0.175 0.825 33 H 0.132 0.868 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.064 0.936 41 H 0.079 0.921 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 6.462 -10.164 -10.024 15.669 hybrid contribution 0.236 1.737 0.055 1.754 sum 6.698 -8.427 -9.968 14.671 Atomic orbital electron populations 1.70012 1.06452 1.25704 1.54138 1.25589 0.95458 1.00489 1.01179 0.85661 0.79008 0.81725 0.76885 1.19850 1.21630 1.22012 1.18930 0.93825 0.86145 1.37346 0.93389 1.44015 1.51201 1.03226 1.31348 1.19794 0.90157 1.01203 0.83108 1.20442 1.00401 0.92925 0.97225 1.20689 0.98210 0.98325 0.94436 1.20086 1.03819 0.94404 0.97379 1.18245 1.00749 0.94346 0.90648 1.41770 1.49491 1.07369 1.20871 0.73390 1.22425 1.00304 0.82812 1.00385 1.21950 1.09058 0.97626 0.97501 1.19583 1.02658 0.94426 0.96560 1.20126 0.99505 0.96055 0.94838 1.21226 0.93811 0.87298 0.91821 1.22722 0.97617 0.99331 0.97158 1.22391 0.94359 0.99716 0.98416 1.22224 0.97603 1.00451 0.94779 1.22420 0.97319 0.99843 0.96767 0.94085 0.91004 0.95317 0.88344 0.85051 0.76879 0.82530 0.86832 0.92827 0.93816 0.93394 0.90312 0.91691 0.90439 0.93609 0.92085 0.94000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.27 11.42 21.65 0.25 -53.02 16 2 C -0.03 -1.68 4.96 84.86 0.42 -1.26 16 3 Si 0.94 45.08 29.61 68.60 2.03 47.11 16 4 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 6 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 7 C -0.23 -12.51 7.80 84.03 0.66 -11.86 16 8 H 0.05 2.68 6.93 -2.91 -0.02 2.66 16 9 N -0.58 -28.59 2.37 -678.32 -1.61 -30.20 16 10 C 0.18 8.93 5.36 85.63 0.46 9.39 16 11 C -0.11 -4.64 5.43 -20.10 -0.11 -4.75 16 12 C -0.10 -4.12 9.66 22.30 0.22 -3.90 16 13 C -0.14 -4.81 10.08 22.36 0.23 -4.59 16 14 C 0.07 2.16 7.28 39.03 0.28 2.45 16 15 N -0.59 -13.14 6.07 -187.61 -1.14 -14.27 16 16 H 0.43 6.41 8.96 -92.71 -0.83 5.58 16 17 C 0.07 1.29 11.82 83.00 0.98 2.27 16 18 C -0.24 -6.11 11.08 23.51 0.26 -5.85 16 19 C -0.13 -4.40 6.37 -20.20 -0.13 -4.53 16 20 C -0.09 -3.33 9.67 22.23 0.22 -3.11 16 21 C 0.16 6.98 3.41 45.71 0.16 7.13 16 22 C -0.13 -5.22 6.43 31.70 0.20 -5.01 16 23 C -0.11 -3.51 6.91 31.91 0.22 -3.29 16 24 C -0.11 -3.71 6.83 31.67 0.22 -3.50 16 25 C -0.12 -4.74 6.14 31.32 0.19 -4.55 16 26 H 0.25 14.11 8.32 -92.70 -0.77 13.34 16 27 H 0.07 3.99 5.40 -2.39 -0.01 3.98 16 28 H 0.03 1.35 7.90 -2.39 -0.02 1.33 16 29 H 0.10 4.56 8.06 -2.91 -0.02 4.54 16 30 H 0.13 3.87 8.06 -2.91 -0.02 3.85 16 31 H 0.21 1.85 8.06 -2.91 -0.02 1.83 16 32 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 33 H 0.11 4.16 8.06 -2.91 -0.02 4.14 16 34 H 0.05 2.16 7.86 -2.39 -0.02 2.14 16 35 H 0.04 2.12 7.22 -2.38 -0.02 2.10 16 36 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 41 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.04 1.84 6.70 -2.39 -0.02 1.82 16 Total: -1.00 -65.98 338.45 4.18 -61.80 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: 0.18 Total: 23.54 kcal Atomic # 6 Polarization: -39.42 SS G_CDS: 4.47 Total: -34.95 kcal Atomic # 7 Polarization: -95.00 SS G_CDS: -2.50 Total: -97.50 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -65.98 4.18 -61.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589821194.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.552 kcal (2) G-P(sol) polarization free energy of solvation -65.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds