Wall clock time and date at job start Tue Mar 31 2020 05:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99880 * 2 1 4 4 H 1.48501 * 109.46823 * 269.99837 * 3 2 1 5 5 H 1.48501 * 109.47227 * 29.99860 * 3 2 1 6 6 H 1.48497 * 109.46965 * 149.99900 * 3 2 1 7 7 C 1.37873 * 120.00209 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00171 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99588 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46585 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46985 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47233 * 179.97438 * 11 10 9 13 13 C 1.34784 * 119.99932 * 180.02562 * 12 11 10 14 14 O 1.21589 * 119.99809 * 0.02562 * 13 12 11 15 15 N 1.34778 * 119.99811 * 179.97438 * 13 12 11 16 16 C 1.46495 * 119.99773 * 179.97438 * 15 13 12 17 17 H 1.09002 * 110.01959 * 326.39084 * 16 15 13 18 18 C 1.53872 * 110.07304 * 87.81331 * 16 15 13 19 19 C 1.54265 * 106.60077 * 119.30475 * 18 16 15 20 20 C 1.54892 * 104.19296 * 23.61250 * 19 18 16 21 21 H 1.08998 * 110.91525 * 80.44321 * 20 19 18 22 22 C 1.50706 * 110.75399 * 203.73989 * 20 19 18 23 23 O 1.20825 * 119.99859 * 113.32308 * 22 20 19 24 24 O 1.34224 * 120.00295 * 293.33267 * 22 20 19 25 25 C 1.54264 * 110.03222 * 205.00398 * 16 15 13 26 26 H 0.97001 * 119.99917 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47258 * 60.00019 * 9 7 2 28 28 H 1.08999 * 109.46745 * 299.99453 * 9 7 2 29 29 H 1.09002 * 109.47652 * 59.99951 * 10 9 7 30 30 H 1.09003 * 109.47658 * 299.99448 * 10 9 7 31 31 H 1.09002 * 109.46768 * 59.99652 * 11 10 9 32 32 H 1.09001 * 109.47160 * 300.00440 * 11 10 9 33 33 H 0.96998 * 120.00146 * 359.97438 * 12 11 10 34 34 H 0.96999 * 120.00145 * 0.02562 * 15 13 12 35 35 H 1.09007 * 110.02895 * 238.59369 * 18 16 15 36 36 H 1.09003 * 110.03198 * 359.96718 * 18 16 15 37 37 H 1.08998 * 110.48828 * 264.93262 * 19 18 16 38 38 H 1.09007 * 110.48633 * 142.28626 * 19 18 16 39 39 H 0.96700 * 117.00196 * 179.97438 * 24 22 20 40 40 H 1.08999 * 110.48911 * 98.37958 * 25 16 15 41 41 H 1.08996 * 110.48722 * 335.73445 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9870 0.0012 12 7 2.4323 -6.1005 0.0006 13 6 1.9830 -7.3713 0.0005 14 8 0.7876 -7.5934 0.0004 15 7 2.8589 -8.3957 -0.0006 16 6 2.3706 -9.7768 -0.0002 17 1 1.4427 -9.8444 0.5678 18 6 2.1409 -10.2562 -1.4442 19 6 3.0722 -11.4669 -1.6600 20 6 3.3286 -12.0083 -0.2316 21 1 2.4947 -12.6230 0.1070 22 6 4.6186 -12.7858 -0.1787 23 8 5.5509 -12.3662 0.4652 24 8 4.7318 -13.9443 -0.8470 25 6 3.4335 -10.7129 0.6111 26 1 -0.4850 0.8401 -0.0004 27 1 0.6247 -2.5570 -0.8896 28 1 0.6241 -2.5566 0.8903 29 1 2.8720 -3.6043 0.8905 30 1 2.8719 -3.6043 -0.8895 31 1 0.8533 -5.0450 -0.8886 32 1 0.8539 -5.0445 0.8914 33 1 3.3860 -5.9233 -0.0005 34 1 3.8125 -8.2184 -0.0010 35 1 1.1014 -10.5563 -1.5770 36 1 2.3922 -9.4610 -2.1460 37 1 4.0076 -11.1511 -2.1219 38 1 2.5797 -12.2228 -2.2718 39 1 5.5786 -14.4069 -0.7833 40 1 3.2047 -10.9186 1.6568 41 1 4.4272 -10.2753 0.5160 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592204500.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:08 Heat of formation + Delta-G solvation = -149.629399 kcal Electronic energy + Delta-G solvation = -21562.415010 eV Core-core repulsion = 18055.114810 eV Total energy + Delta-G solvation = -3507.300200 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.99489 -39.93826 -38.04272 -36.52984 -35.35458 -33.82356 -33.20329 -31.12590 -29.51922 -28.50302 -26.42143 -23.77050 -23.06086 -21.27122 -20.64027 -20.54678 -20.16371 -18.54485 -18.03330 -17.47052 -16.58559 -16.36324 -15.95613 -15.46960 -15.25104 -14.65112 -14.39537 -13.99709 -13.96756 -13.77136 -13.71716 -12.59592 -12.37820 -12.26067 -12.13916 -11.95775 -11.78802 -11.70005 -11.63844 -11.38085 -11.03879 -10.89540 -10.81648 -10.70796 -10.58284 -10.08145 -9.84573 -9.42981 -9.20449 -9.11404 -8.59940 -8.36245 -6.00860 -4.03886 1.73699 2.49050 2.87145 3.31385 3.35882 3.37744 3.40630 3.92411 4.07299 4.38836 4.44501 4.49081 4.82888 4.87781 4.99364 5.02452 5.05998 5.16683 5.34846 5.40838 5.59078 5.68603 5.72875 5.83044 5.85902 5.89405 6.03804 6.20284 6.50542 6.54768 6.63985 6.82293 7.03783 7.09011 7.42725 7.65000 7.77963 7.98142 8.16268 8.39088 8.76659 9.02823 9.60175 11.10384 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.045309 B = 0.002189 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.824920 B =12790.089904 C =13123.200530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.135 3.865 12 N -0.742 5.742 13 C 0.700 3.300 14 O -0.593 6.593 15 N -0.746 5.746 16 C 0.161 3.839 17 H 0.097 0.903 18 C -0.137 4.137 19 C -0.109 4.109 20 C -0.088 4.088 21 H 0.119 0.881 22 C 0.487 3.513 23 O -0.514 6.514 24 O -0.516 6.516 25 C -0.115 4.115 26 H 0.261 0.739 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.394 0.606 34 H 0.395 0.605 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.410 0.590 40 H 0.083 0.917 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.181 -27.833 -2.019 29.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.012 3.988 12 N -0.396 5.396 13 C 0.400 3.600 14 O -0.471 6.471 15 N -0.402 5.402 16 C 0.055 3.945 17 H 0.115 0.885 18 C -0.176 4.176 19 C -0.146 4.146 20 C -0.107 4.107 21 H 0.137 0.863 22 C 0.329 3.671 23 O -0.401 6.401 24 O -0.327 6.327 25 C -0.153 4.153 26 H 0.071 0.929 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.227 0.773 34 H 0.229 0.771 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.269 0.731 40 H 0.102 0.898 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.760 -27.553 -1.856 28.685 hybrid contribution 1.964 0.782 0.044 2.115 sum 9.724 -26.771 -1.812 28.540 Atomic orbital electron populations 1.69967 1.06041 1.26664 1.50581 1.25036 0.94869 0.99302 0.95320 0.86580 0.79792 0.83448 0.78074 1.20675 1.21217 1.19915 1.21205 0.92983 0.90953 1.50878 0.92663 1.19030 0.93863 0.90814 0.97692 1.21891 0.99782 0.93358 1.00816 1.21506 0.91289 0.84156 1.01857 1.45403 1.10464 1.04491 1.79241 1.16037 0.85344 0.80799 0.77837 1.90915 1.14102 1.84111 1.57937 1.45282 1.08883 1.04855 1.81196 1.21355 0.97632 0.79556 0.95912 0.88465 1.22657 1.00226 0.97402 0.97277 1.22343 1.00659 0.98044 0.93598 1.21989 0.93232 0.95902 0.99613 0.86280 1.23362 0.90098 0.78805 0.74817 1.90740 1.40967 1.68475 1.39966 1.84544 1.43956 1.35775 1.68460 1.22603 1.00564 0.92727 0.99454 0.92937 0.96250 0.96225 0.92778 0.92789 0.91981 0.91964 0.77317 0.77132 0.90344 0.90416 0.91017 0.90003 0.73125 0.89802 0.89347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.87 13.29 55.43 0.74 -26.14 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 11 C 0.14 2.41 5.67 -4.04 -0.02 2.38 16 12 N -0.74 -10.67 5.56 -65.22 -0.36 -11.04 16 13 C 0.70 10.41 8.56 -86.91 -0.74 9.67 16 14 O -0.59 -11.30 16.00 5.29 0.08 -11.21 16 15 N -0.75 -7.73 4.99 -57.58 -0.29 -8.02 16 16 C 0.16 1.44 3.24 -66.82 -0.22 1.23 16 17 H 0.10 1.03 7.57 -51.93 -0.39 0.64 16 18 C -0.14 -1.09 6.59 -25.62 -0.17 -1.26 16 19 C -0.11 -0.64 6.26 -25.07 -0.16 -0.80 16 20 C -0.09 -0.53 3.40 -89.77 -0.31 -0.83 16 21 H 0.12 0.53 8.14 -51.93 -0.42 0.10 16 22 C 0.49 3.54 7.63 36.01 0.27 3.82 16 23 O -0.51 -5.38 16.48 -18.75 -0.31 -5.69 16 24 O -0.52 -2.66 13.42 -39.24 -0.53 -3.18 16 25 C -0.12 -0.82 5.60 -25.07 -0.14 -0.96 16 26 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.39 4.52 8.49 -40.82 -0.35 4.17 16 34 H 0.39 3.11 8.37 -40.82 -0.34 2.77 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.72 7.92 -51.93 -0.41 0.31 16 37 H 0.07 0.44 8.04 -51.93 -0.42 0.02 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.41 0.54 9.10 45.56 0.41 0.96 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 0.68 7.03 -51.93 -0.37 0.32 16 LS Contribution 346.37 15.07 5.22 5.22 Total: -1.00 -35.58 346.37 -8.27 -43.84 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -5.63 Total: 1.90 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -2.17 Total: -2.20 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: 0.09 Total: -45.19 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.75 Total: -20.09 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.58 -8.27 -43.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592204500.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.787 kcal (2) G-P(sol) polarization free energy of solvation -35.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds