Wall clock time and date at job start Tue Mar 31 2020 05:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99880 * 2 1 4 4 H 1.48501 * 109.46823 * 269.99837 * 3 2 1 5 5 H 1.48501 * 109.47227 * 29.99860 * 3 2 1 6 6 H 1.48497 * 109.46965 * 149.99900 * 3 2 1 7 7 C 1.37873 * 120.00209 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00171 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99588 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46585 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46985 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47233 * 179.97438 * 11 10 9 13 13 C 1.34784 * 119.99932 * 180.02562 * 12 11 10 14 14 O 1.21589 * 119.99809 * 0.02562 * 13 12 11 15 15 N 1.34778 * 119.99811 * 179.97438 * 13 12 11 16 16 C 1.46495 * 119.99773 * 179.97438 * 15 13 12 17 17 H 1.09002 * 110.01959 * 326.39084 * 16 15 13 18 18 C 1.53872 * 110.07304 * 87.81331 * 16 15 13 19 19 C 1.54265 * 106.60077 * 119.30475 * 18 16 15 20 20 C 1.54892 * 104.19296 * 23.61250 * 19 18 16 21 21 H 1.08998 * 110.91525 * 80.44321 * 20 19 18 22 22 C 1.50706 * 110.75399 * 203.73989 * 20 19 18 23 23 O 1.20825 * 119.99859 * 113.32308 * 22 20 19 24 24 O 1.34224 * 120.00295 * 293.33267 * 22 20 19 25 25 C 1.54264 * 110.03222 * 205.00398 * 16 15 13 26 26 H 0.97001 * 119.99917 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47258 * 60.00019 * 9 7 2 28 28 H 1.08999 * 109.46745 * 299.99453 * 9 7 2 29 29 H 1.09002 * 109.47652 * 59.99951 * 10 9 7 30 30 H 1.09003 * 109.47658 * 299.99448 * 10 9 7 31 31 H 1.09002 * 109.46768 * 59.99652 * 11 10 9 32 32 H 1.09001 * 109.47160 * 300.00440 * 11 10 9 33 33 H 0.96998 * 120.00146 * 359.97438 * 12 11 10 34 34 H 0.96999 * 120.00145 * 0.02562 * 15 13 12 35 35 H 1.09007 * 110.02895 * 238.59369 * 18 16 15 36 36 H 1.09003 * 110.03198 * 359.96718 * 18 16 15 37 37 H 1.08998 * 110.48828 * 264.93262 * 19 18 16 38 38 H 1.09007 * 110.48633 * 142.28626 * 19 18 16 39 39 H 0.96700 * 117.00196 * 179.97438 * 24 22 20 40 40 H 1.08999 * 110.48911 * 98.37958 * 25 16 15 41 41 H 1.08996 * 110.48722 * 335.73445 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9870 0.0012 12 7 2.4323 -6.1005 0.0006 13 6 1.9830 -7.3713 0.0005 14 8 0.7876 -7.5934 0.0004 15 7 2.8589 -8.3957 -0.0006 16 6 2.3706 -9.7768 -0.0002 17 1 1.4427 -9.8444 0.5678 18 6 2.1409 -10.2562 -1.4442 19 6 3.0722 -11.4669 -1.6600 20 6 3.3286 -12.0083 -0.2316 21 1 2.4947 -12.6230 0.1070 22 6 4.6186 -12.7858 -0.1787 23 8 5.5509 -12.3662 0.4652 24 8 4.7318 -13.9443 -0.8470 25 6 3.4335 -10.7129 0.6111 26 1 -0.4850 0.8401 -0.0004 27 1 0.6247 -2.5570 -0.8896 28 1 0.6241 -2.5566 0.8903 29 1 2.8720 -3.6043 0.8905 30 1 2.8719 -3.6043 -0.8895 31 1 0.8533 -5.0450 -0.8886 32 1 0.8539 -5.0445 0.8914 33 1 3.3860 -5.9233 -0.0005 34 1 3.8125 -8.2184 -0.0010 35 1 1.1014 -10.5563 -1.5770 36 1 2.3922 -9.4610 -2.1460 37 1 4.0076 -11.1511 -2.1219 38 1 2.5797 -12.2228 -2.2718 39 1 5.5786 -14.4069 -0.7833 40 1 3.2047 -10.9186 1.6568 41 1 4.4272 -10.2753 0.5160 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592204500.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:08 Heat of formation + Delta-G solvation = -175.997355 kcal Electronic energy + Delta-G solvation = -21563.558410 eV Core-core repulsion = 18055.114810 eV Total energy + Delta-G solvation = -3508.443601 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.62348 -40.97532 -38.81528 -37.08641 -36.87051 -35.18357 -34.72469 -32.85896 -30.13998 -29.44362 -28.07905 -25.01717 -24.18804 -22.31820 -22.23114 -21.22190 -21.05151 -19.20735 -19.07653 -18.51015 -18.06446 -17.16398 -16.99119 -16.65439 -16.45871 -16.10763 -15.54453 -15.37301 -15.23160 -14.41764 -14.32273 -14.25631 -13.72950 -13.59710 -13.21690 -12.97773 -12.76947 -12.69290 -12.53422 -12.51325 -12.35361 -12.21782 -11.97102 -11.69092 -11.65490 -11.59901 -11.39977 -11.27590 -11.11641 -10.54414 -10.34257 -9.75127 -8.18510 -6.29901 1.19888 1.42180 1.43650 1.54523 1.69221 2.12930 2.19650 2.42693 3.15081 3.26259 3.43240 3.55985 3.93000 4.18752 4.23080 4.25248 4.33876 4.41671 4.45092 4.49470 4.58152 4.61246 4.87768 4.97725 4.98208 5.06525 5.11946 5.18579 5.19965 5.26190 5.48674 5.56248 5.63171 5.64592 5.72713 5.85572 6.03398 6.23877 6.87392 7.00598 7.13169 7.39486 7.61153 8.93540 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.045309 B = 0.002189 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.824920 B =12790.089904 C =13123.200530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.968 3.032 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.540 4.540 8 H 0.066 0.934 9 C 0.023 3.977 10 C -0.101 4.101 11 C 0.150 3.850 12 N -0.732 5.732 13 C 0.698 3.302 14 O -0.637 6.637 15 N -0.727 5.727 16 C 0.157 3.843 17 H 0.080 0.920 18 C -0.134 4.134 19 C -0.098 4.098 20 C -0.084 4.084 21 H 0.140 0.860 22 C 0.494 3.506 23 O -0.550 6.550 24 O -0.511 6.511 25 C -0.107 4.107 26 H 0.263 0.737 27 H -0.007 1.007 28 H -0.008 1.008 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.411 0.589 34 H 0.410 0.590 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.427 0.573 40 H 0.087 0.913 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.313 -28.845 -2.330 31.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.185 1.185 7 C -0.578 4.578 8 H 0.084 0.916 9 C -0.015 4.015 10 C -0.138 4.138 11 C 0.026 3.974 12 N -0.388 5.388 13 C 0.398 3.602 14 O -0.519 6.519 15 N -0.384 5.384 16 C 0.052 3.948 17 H 0.098 0.902 18 C -0.173 4.173 19 C -0.136 4.136 20 C -0.104 4.104 21 H 0.157 0.843 22 C 0.338 3.662 23 O -0.441 6.441 24 O -0.324 6.324 25 C -0.146 4.146 26 H 0.072 0.928 27 H 0.011 0.989 28 H 0.011 0.989 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.247 0.753 34 H 0.247 0.753 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.116 0.884 39 H 0.289 0.711 40 H 0.106 0.894 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.970 -28.623 -2.181 30.388 hybrid contribution 1.284 1.000 0.123 1.632 sum 11.254 -27.623 -2.058 29.898 Atomic orbital electron populations 1.70114 1.07912 1.27765 1.51698 1.26037 0.95778 1.03578 0.94850 0.85407 0.78656 0.78279 0.78440 1.19814 1.21065 1.18470 1.21680 0.93737 0.92011 1.50390 0.91554 1.18948 0.94466 0.92938 0.95117 1.21588 0.98429 0.91773 1.02059 1.21056 0.91330 0.84617 1.00432 1.45056 1.10808 1.03682 1.79209 1.16178 0.85155 0.81352 0.77551 1.90888 1.16289 1.84765 1.59939 1.45153 1.09134 1.04498 1.79573 1.21486 0.97657 0.78925 0.96728 0.90192 1.22585 1.00731 0.97931 0.96011 1.22271 1.00205 0.97341 0.93771 1.22005 0.93503 0.95542 0.99325 0.84278 1.23454 0.89741 0.78977 0.74046 1.90735 1.42204 1.69484 1.41675 1.84505 1.45303 1.34993 1.67598 1.22504 0.99442 0.92820 0.99792 0.92829 0.98903 0.98920 0.91455 0.91384 0.93509 0.93562 0.75269 0.75343 0.90555 0.91716 0.90960 0.88415 0.71130 0.89400 0.89669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.31 13.29 21.45 0.28 -57.03 16 2 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 3 Si 0.97 43.94 29.54 68.60 2.03 45.97 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 6 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 7 C -0.54 -30.24 9.11 25.60 0.23 -30.01 16 8 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.02 1.21 4.97 29.85 0.15 1.35 16 10 C -0.10 -3.89 5.27 30.59 0.16 -3.73 16 11 C 0.15 5.40 5.67 86.38 0.49 5.89 16 12 N -0.73 -20.42 5.56 -478.52 -2.66 -23.08 16 13 C 0.70 20.49 8.56 179.05 1.53 22.03 16 14 O -0.64 -24.71 16.00 -3.99 -0.06 -24.77 16 15 N -0.73 -14.33 4.99 -454.35 -2.27 -16.59 16 16 C 0.16 2.68 3.24 45.71 0.15 2.83 16 17 H 0.08 1.69 7.57 -2.39 -0.02 1.67 16 18 C -0.13 -1.99 6.59 31.32 0.21 -1.78 16 19 C -0.10 -0.94 6.26 31.67 0.20 -0.75 16 20 C -0.08 -0.82 3.40 -10.25 -0.03 -0.86 16 21 H 0.14 0.84 8.14 -2.39 -0.02 0.82 16 22 C 0.49 6.15 7.63 71.24 0.54 6.69 16 23 O -0.55 -10.73 16.48 21.97 0.36 -10.37 16 24 O -0.51 -3.96 13.42 -51.35 -0.69 -4.65 16 25 C -0.11 -1.36 5.60 31.67 0.18 -1.18 16 26 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 27 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 28 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 29 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.41 8.60 8.49 -92.71 -0.79 7.81 16 34 H 0.41 5.71 8.37 -92.71 -0.78 4.94 16 35 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 36 H 0.06 1.15 7.92 -2.39 -0.02 1.13 16 37 H 0.07 0.72 8.04 -2.39 -0.02 0.70 16 38 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 39 H 0.43 0.11 9.10 -74.06 -0.67 -0.56 16 40 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.08 1.17 7.03 -2.39 -0.02 1.15 16 Total: -1.00 -77.80 346.37 0.08 -77.71 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -1.18 Total: 12.13 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: 4.27 Total: 0.67 kcal Atomic # 7 Polarization: -92.06 SS G_CDS: -4.64 Total: -96.70 kcal Atomic # 8 Polarization: -39.40 SS G_CDS: -0.39 Total: -39.79 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -77.80 0.08 -77.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592204500.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.284 kcal (2) G-P(sol) polarization free energy of solvation -77.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds