Wall clock time and date at job start Tue Mar 31 2020 05:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.45850 * 2 1 4 4 O 1.20826 * 119.99855 * 240.02047 * 3 2 1 5 5 O 1.34228 * 120.00169 * 60.02633 * 3 2 1 6 6 C 1.53038 * 109.46251 * 240.02278 * 2 1 3 7 7 C 1.53187 * 109.34221 * 301.34816 * 6 2 1 8 8 N 1.46937 * 108.76844 * 305.41245 * 7 6 2 9 9 C 1.34774 * 120.60520 * 233.57815 * 8 7 6 10 10 O 1.21597 * 119.99875 * 354.94247 * 9 8 7 11 11 N 1.34772 * 120.00377 * 174.94260 * 9 8 7 12 12 C 1.46505 * 120.00371 * 185.07390 * 11 9 8 13 13 C 1.52998 * 109.47356 * 179.97438 * 12 11 9 14 14 C 1.50696 * 109.47341 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99828 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00217 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00042 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99990 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46834 * 89.99865 * 18 16 14 20 20 H 1.48497 * 109.47005 * 209.99721 * 18 16 14 21 21 H 1.48502 * 109.47067 * 330.00241 * 18 16 14 22 22 C 1.46927 * 118.76777 * 53.55607 * 8 7 6 23 23 C 1.53044 * 109.44718 * 119.96196 * 2 1 3 24 24 H 1.08996 * 109.47059 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47493 * 299.97665 * 1 2 3 26 26 H 1.09002 * 109.46783 * 59.97340 * 1 2 3 27 27 H 0.96701 * 117.00295 * 179.97438 * 5 3 2 28 28 H 1.09003 * 109.49167 * 61.31398 * 6 2 1 29 29 H 1.08998 * 109.49901 * 181.37431 * 6 2 1 30 30 H 1.09001 * 109.58812 * 65.16128 * 7 6 2 31 31 H 1.08999 * 109.59087 * 185.59319 * 7 6 2 32 32 H 0.96997 * 119.99752 * 5.06810 * 11 9 8 33 33 H 1.08996 * 109.46982 * 300.00446 * 12 11 9 34 34 H 1.09007 * 109.46826 * 59.99582 * 12 11 9 35 35 H 1.08994 * 109.47143 * 300.00417 * 13 12 11 36 36 H 1.09005 * 109.46789 * 59.99982 * 13 12 11 37 37 H 0.96993 * 120.00421 * 180.02562 * 17 16 14 38 38 H 1.08993 * 109.58716 * 186.62326 * 22 8 7 39 39 H 1.08995 * 109.58545 * 66.19680 * 22 8 7 40 40 H 1.08994 * 109.49793 * 178.59838 * 23 2 1 41 41 H 1.08996 * 109.49717 * 298.67119 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0320 1.4209 0.0000 4 8 2.7263 1.8163 -0.9064 5 8 1.7080 2.2472 1.0070 6 6 2.0399 -0.7210 -1.2499 7 6 1.5000 -2.1545 -1.2645 8 7 1.8619 -2.8089 0.0003 9 6 2.5152 -3.9877 0.0005 10 8 2.7292 -4.5644 -1.0484 11 7 2.9313 -4.5275 1.1632 12 6 3.7373 -5.7509 1.1561 13 6 4.0744 -6.1479 2.5947 14 6 4.9040 -7.4060 2.5873 15 1 5.1644 -7.8756 1.6503 16 6 5.3297 -7.9580 3.7768 17 7 5.0123 -7.3865 4.9179 18 14 6.3575 -9.5179 3.7677 19 1 7.7976 -9.1614 3.7045 20 1 6.0931 -10.2921 5.0069 21 1 5.9987 -10.3401 2.5842 22 6 1.4989 -2.1541 1.2645 23 6 2.0396 -0.7207 1.2503 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5135 0.8902 26 1 -0.3633 0.5143 -0.8898 27 1 2.0539 3.1492 0.9633 28 1 1.6961 -0.1936 -2.1397 29 1 3.1296 -0.7427 -1.2383 30 1 0.4151 -2.1353 -1.3680 31 1 1.9391 -2.7019 -2.0985 32 1 2.6971 -4.1059 2.0048 33 1 3.1749 -6.5537 0.6794 34 1 4.6596 -5.5750 0.6024 35 1 4.6369 -5.3450 3.0709 36 1 3.1522 -6.3236 3.1487 37 1 5.3120 -7.7746 5.7547 38 1 1.9373 -2.7017 2.0987 39 1 0.4140 -2.1344 1.3673 40 1 3.1292 -0.7430 1.2386 41 1 1.6958 -0.1930 2.1399 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592212357.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:08 Heat of formation + Delta-G solvation = -129.694737 kcal Electronic energy + Delta-G solvation = -22842.880987 eV Core-core repulsion = 19336.445219 eV Total energy + Delta-G solvation = -3506.435769 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.25447 -39.93795 -37.88152 -36.43083 -34.91671 -33.90345 -32.81743 -31.38152 -29.53513 -28.05894 -26.09878 -24.69419 -23.49660 -22.71630 -21.11175 -20.26746 -18.86610 -18.34293 -17.98349 -16.67703 -16.40310 -16.05970 -15.81635 -15.42218 -14.94111 -14.52421 -14.32038 -14.19274 -13.88328 -13.76335 -13.43845 -12.92435 -12.62489 -12.36228 -12.28664 -12.16742 -11.99779 -11.82844 -11.50167 -11.20119 -11.04539 -10.99796 -10.82773 -10.65600 -10.61660 -10.31798 -9.89067 -9.54013 -9.25956 -8.76264 -8.46109 -8.20164 -6.08986 -4.11453 1.88130 2.64825 2.86447 3.30177 3.36305 3.40910 3.53520 4.13844 4.16188 4.33101 4.44958 4.45437 4.78516 4.89852 4.95993 5.03486 5.17988 5.28292 5.35234 5.36627 5.45343 5.52305 5.56826 5.64473 5.78189 5.83806 6.02748 6.17116 6.26600 6.40490 6.56000 6.77734 6.99409 7.14208 7.55636 7.56737 7.63204 7.90167 8.24453 8.36339 8.92036 8.97474 9.53341 11.02724 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.029569 B = 0.003124 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.705775 B = 8960.237940 C = 9392.876435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.047 4.047 3 C 0.488 3.512 4 O -0.513 6.513 5 O -0.514 6.514 6 C -0.116 4.116 7 C 0.132 3.868 8 N -0.637 5.637 9 C 0.703 3.297 10 O -0.594 6.594 11 N -0.739 5.739 12 C 0.139 3.861 13 C 0.013 3.987 14 C -0.520 4.520 15 H 0.060 0.940 16 C 0.059 3.941 17 N -0.895 5.895 18 Si 0.897 3.103 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.272 1.272 22 C 0.113 3.887 23 C -0.124 4.124 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.409 0.591 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.392 0.608 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.021 0.979 36 H 0.022 0.978 37 H 0.262 0.738 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.205 19.252 -6.264 23.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.049 4.049 3 C 0.330 3.670 4 O -0.400 6.400 5 O -0.325 6.325 6 C -0.155 4.155 7 C 0.009 3.991 8 N -0.376 5.376 9 C 0.405 3.595 10 O -0.473 6.473 11 N -0.394 5.394 12 C 0.016 3.984 13 C -0.024 4.024 14 C -0.559 4.559 15 H 0.078 0.922 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.724 3.276 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.011 4.011 23 C -0.163 4.163 24 H 0.098 0.902 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.267 0.733 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.118 0.882 32 H 0.228 0.772 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.071 0.929 38 H 0.106 0.894 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.948 18.462 -7.072 22.599 hybrid contribution 0.775 0.175 0.596 0.993 sum -10.173 18.637 -6.476 22.198 Atomic orbital electron populations 1.21993 0.91351 1.03946 1.03114 1.20511 0.98101 0.87296 0.98944 1.23508 0.76643 0.88428 0.78454 1.90727 1.35707 1.77098 1.36501 1.84533 1.72184 1.27477 1.48336 1.21933 1.02387 0.95346 0.95814 1.21429 0.99518 0.91197 0.86989 1.47303 1.62024 1.21679 1.06570 1.15963 0.78304 0.80399 0.84878 1.90883 1.62976 1.62362 1.31060 1.45715 1.57101 1.30190 1.06417 1.21608 0.92706 0.82888 1.01196 1.19319 0.97177 0.96977 0.88951 1.21052 1.32804 1.09212 0.92832 0.92211 1.24989 0.96216 0.97593 0.95483 1.69948 1.45872 1.40151 0.97401 0.86512 0.80477 0.83018 0.77551 1.20573 1.21191 1.19704 1.21627 1.00394 0.92211 0.86871 1.22009 1.02065 0.95916 0.96305 0.90183 0.90980 0.91918 0.73278 0.89804 0.90387 0.91478 0.88231 0.77232 0.92659 0.92858 0.96039 0.95980 0.92871 0.89397 0.90694 0.90559 0.89152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 7.64 37.16 0.28 -0.66 16 2 C -0.05 -0.40 0.71 -155.62 -0.11 -0.51 16 3 C 0.49 4.59 6.92 36.00 0.25 4.84 16 4 O -0.51 -6.48 16.74 -18.75 -0.31 -6.80 16 5 O -0.51 -3.48 13.20 -39.25 -0.52 -4.00 16 6 C -0.12 -1.15 4.20 -26.62 -0.11 -1.26 16 7 C 0.13 1.44 5.95 -3.71 -0.02 1.42 16 8 N -0.64 -8.16 2.97 -178.49 -0.53 -8.69 16 9 C 0.70 12.38 8.29 -86.92 -0.72 11.66 16 10 O -0.59 -12.77 15.78 5.28 0.08 -12.69 16 11 N -0.74 -13.14 5.47 -65.22 -0.36 -13.49 16 12 C 0.14 2.99 5.62 -4.04 -0.02 2.97 16 13 C 0.01 0.33 5.09 -27.89 -0.14 0.19 16 14 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 15 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.00 13.29 55.43 0.74 -25.27 16 18 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 22 C 0.11 1.06 5.97 -3.71 -0.02 1.04 16 23 C -0.12 -1.05 4.84 -26.61 -0.13 -1.18 16 24 H 0.08 0.49 4.98 -51.93 -0.26 0.24 16 25 H 0.07 0.41 8.11 -51.93 -0.42 -0.01 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.41 1.20 9.10 45.56 0.41 1.61 16 28 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 29 H 0.08 0.93 8.13 -51.93 -0.42 0.50 16 30 H 0.07 0.60 6.70 -51.93 -0.35 0.25 16 31 H 0.10 1.29 7.03 -51.93 -0.37 0.92 16 32 H 0.39 6.00 5.93 -40.82 -0.24 5.76 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 34 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 38 H 0.09 0.84 5.56 -51.93 -0.29 0.55 16 39 H 0.07 0.57 6.69 -51.93 -0.35 0.22 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.09 0.62 8.08 -51.93 -0.42 0.20 16 LS Contribution 331.40 15.07 4.99 4.99 Total: -1.00 -34.69 331.40 -7.28 -41.97 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -5.20 Total: 2.29 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: -1.16 Total: 5.32 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: -0.15 Total: -47.45 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.75 Total: -23.48 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.69 -7.28 -41.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592212357.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.723 kcal (2) G-P(sol) polarization free energy of solvation -34.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds