Wall clock time and date at job start Tue Mar 31 2020 05:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.45850 * 2 1 4 4 O 1.20826 * 119.99855 * 240.02047 * 3 2 1 5 5 O 1.34228 * 120.00169 * 60.02633 * 3 2 1 6 6 C 1.53038 * 109.46251 * 240.02278 * 2 1 3 7 7 C 1.53187 * 109.34221 * 301.34816 * 6 2 1 8 8 N 1.46937 * 108.76844 * 305.41245 * 7 6 2 9 9 C 1.34774 * 120.60520 * 233.57815 * 8 7 6 10 10 O 1.21597 * 119.99875 * 354.94247 * 9 8 7 11 11 N 1.34772 * 120.00377 * 174.94260 * 9 8 7 12 12 C 1.46505 * 120.00371 * 185.07390 * 11 9 8 13 13 C 1.52998 * 109.47356 * 179.97438 * 12 11 9 14 14 C 1.50696 * 109.47341 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99828 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00217 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00042 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99990 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46834 * 89.99865 * 18 16 14 20 20 H 1.48497 * 109.47005 * 209.99721 * 18 16 14 21 21 H 1.48502 * 109.47067 * 330.00241 * 18 16 14 22 22 C 1.46927 * 118.76777 * 53.55607 * 8 7 6 23 23 C 1.53044 * 109.44718 * 119.96196 * 2 1 3 24 24 H 1.08996 * 109.47059 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47493 * 299.97665 * 1 2 3 26 26 H 1.09002 * 109.46783 * 59.97340 * 1 2 3 27 27 H 0.96701 * 117.00295 * 179.97438 * 5 3 2 28 28 H 1.09003 * 109.49167 * 61.31398 * 6 2 1 29 29 H 1.08998 * 109.49901 * 181.37431 * 6 2 1 30 30 H 1.09001 * 109.58812 * 65.16128 * 7 6 2 31 31 H 1.08999 * 109.59087 * 185.59319 * 7 6 2 32 32 H 0.96997 * 119.99752 * 5.06810 * 11 9 8 33 33 H 1.08996 * 109.46982 * 300.00446 * 12 11 9 34 34 H 1.09007 * 109.46826 * 59.99582 * 12 11 9 35 35 H 1.08994 * 109.47143 * 300.00417 * 13 12 11 36 36 H 1.09005 * 109.46789 * 59.99982 * 13 12 11 37 37 H 0.96993 * 120.00421 * 180.02562 * 17 16 14 38 38 H 1.08993 * 109.58716 * 186.62326 * 22 8 7 39 39 H 1.08995 * 109.58545 * 66.19680 * 22 8 7 40 40 H 1.08994 * 109.49793 * 178.59838 * 23 2 1 41 41 H 1.08996 * 109.49717 * 298.67119 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0320 1.4209 0.0000 4 8 2.7263 1.8163 -0.9064 5 8 1.7080 2.2472 1.0070 6 6 2.0399 -0.7210 -1.2499 7 6 1.5000 -2.1545 -1.2645 8 7 1.8619 -2.8089 0.0003 9 6 2.5152 -3.9877 0.0005 10 8 2.7292 -4.5644 -1.0484 11 7 2.9313 -4.5275 1.1632 12 6 3.7373 -5.7509 1.1561 13 6 4.0744 -6.1479 2.5947 14 6 4.9040 -7.4060 2.5873 15 1 5.1644 -7.8756 1.6503 16 6 5.3297 -7.9580 3.7768 17 7 5.0123 -7.3865 4.9179 18 14 6.3575 -9.5179 3.7677 19 1 7.7976 -9.1614 3.7045 20 1 6.0931 -10.2921 5.0069 21 1 5.9987 -10.3401 2.5842 22 6 1.4989 -2.1541 1.2645 23 6 2.0396 -0.7207 1.2503 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5135 0.8902 26 1 -0.3633 0.5143 -0.8898 27 1 2.0539 3.1492 0.9633 28 1 1.6961 -0.1936 -2.1397 29 1 3.1296 -0.7427 -1.2383 30 1 0.4151 -2.1353 -1.3680 31 1 1.9391 -2.7019 -2.0985 32 1 2.6971 -4.1059 2.0048 33 1 3.1749 -6.5537 0.6794 34 1 4.6596 -5.5750 0.6024 35 1 4.6369 -5.3450 3.0709 36 1 3.1522 -6.3236 3.1487 37 1 5.3120 -7.7746 5.7547 38 1 1.9373 -2.7017 2.0987 39 1 0.4140 -2.1344 1.3673 40 1 3.1292 -0.7430 1.2386 41 1 1.6958 -0.1930 2.1399 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592212357.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:07 Heat of formation + Delta-G solvation = -154.444225 kcal Electronic energy + Delta-G solvation = -22843.954206 eV Core-core repulsion = 19336.445219 eV Total energy + Delta-G solvation = -3507.508987 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.08428 -41.05823 -38.90493 -37.12835 -36.62500 -35.10394 -34.58951 -32.36465 -31.24026 -28.87880 -27.10655 -26.31573 -24.43690 -23.64433 -22.87520 -21.43132 -19.94658 -19.24756 -18.78630 -18.49018 -17.45076 -17.15285 -16.87924 -16.61453 -16.47899 -15.74247 -15.56225 -15.31115 -14.93868 -14.76445 -14.57039 -14.26113 -14.19570 -13.51606 -13.15905 -13.01054 -12.93694 -12.90087 -12.71015 -12.52302 -12.51237 -12.27645 -12.22475 -11.81908 -11.64806 -11.60159 -11.47390 -11.39041 -11.10461 -10.59170 -10.15929 -9.47174 -8.22916 -6.32845 1.16273 1.42882 1.43264 1.54467 1.65645 2.01486 2.18842 2.41816 2.99720 3.11987 3.42959 3.58410 3.79692 3.98912 4.18640 4.24163 4.26413 4.43086 4.52540 4.55441 4.62977 4.66366 4.79434 4.85932 4.87669 4.90321 4.94511 5.08167 5.10320 5.31657 5.39082 5.50954 5.56617 5.60183 5.60639 5.79883 5.93080 6.18648 6.79926 6.97506 6.99223 7.36316 7.56378 8.88980 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.029569 B = 0.003124 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.705775 B = 8960.237940 C = 9392.876435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.046 4.046 3 C 0.493 3.507 4 O -0.552 6.552 5 O -0.504 6.504 6 C -0.110 4.110 7 C 0.132 3.868 8 N -0.627 5.627 9 C 0.699 3.301 10 O -0.638 6.638 11 N -0.734 5.734 12 C 0.160 3.840 13 C 0.025 3.975 14 C -0.547 4.547 15 H 0.058 0.942 16 C 0.009 3.991 17 N -0.925 5.925 18 Si 0.964 3.036 19 H -0.273 1.273 20 H -0.279 1.279 21 H -0.267 1.267 22 C 0.107 3.893 23 C -0.119 4.119 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.068 0.932 27 H 0.426 0.574 28 H 0.092 0.908 29 H 0.050 0.950 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.405 0.595 33 H 0.043 0.957 34 H 0.041 0.959 35 H 0.008 0.992 36 H 0.010 0.990 37 H 0.266 0.734 38 H 0.086 0.914 39 H 0.107 0.893 40 H 0.056 0.944 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.469 20.096 -5.611 24.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.048 4.048 3 C 0.337 3.663 4 O -0.443 6.443 5 O -0.317 6.317 6 C -0.148 4.148 7 C 0.009 3.991 8 N -0.365 5.365 9 C 0.401 3.599 10 O -0.520 6.520 11 N -0.391 5.391 12 C 0.035 3.965 13 C -0.012 4.012 14 C -0.585 4.585 15 H 0.076 0.924 16 C -0.190 4.190 17 N -0.565 5.565 18 Si 0.788 3.212 19 H -0.198 1.198 20 H -0.204 1.204 21 H -0.191 1.191 22 C -0.015 4.015 23 C -0.157 4.157 24 H 0.104 0.896 25 H 0.104 0.896 26 H 0.087 0.913 27 H 0.288 0.712 28 H 0.111 0.889 29 H 0.069 0.931 30 H 0.116 0.884 31 H 0.093 0.907 32 H 0.243 0.757 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.027 0.973 36 H 0.029 0.971 37 H 0.075 0.925 38 H 0.104 0.896 39 H 0.125 0.875 40 H 0.075 0.925 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -12.251 19.382 -6.383 23.801 hybrid contribution 1.129 0.032 0.417 1.204 sum -11.122 19.414 -5.966 23.156 Atomic orbital electron populations 1.21999 0.89084 1.04660 1.04193 1.20503 0.99750 0.86669 0.97836 1.23604 0.75690 0.88864 0.78142 1.90723 1.37523 1.77911 1.38129 1.84483 1.71712 1.28596 1.46950 1.21818 1.00674 0.94918 0.97392 1.21567 1.01128 0.91077 0.85303 1.47351 1.60363 1.20062 1.08716 1.16101 0.78486 0.81519 0.83835 1.90850 1.64744 1.64028 1.32412 1.45401 1.56920 1.29316 1.07466 1.21077 0.92549 0.84136 0.98709 1.19113 0.95954 0.95731 0.90418 1.21458 1.33557 1.10461 0.93041 0.92412 1.25838 0.97290 1.00837 0.95058 1.70043 1.46787 1.41648 0.97996 0.85463 0.78862 0.79014 0.77818 1.19848 1.20441 1.19139 1.21940 1.02359 0.92290 0.84930 1.21975 1.00902 0.95424 0.97389 0.89556 0.89560 0.91319 0.71193 0.88910 0.93111 0.88393 0.90694 0.75691 0.93832 0.94107 0.97335 0.97142 0.92529 0.89566 0.87516 0.92501 0.86668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 7.64 71.98 0.55 -0.75 16 2 C -0.05 -0.68 0.71 -52.90 -0.04 -0.72 16 3 C 0.49 8.40 6.92 71.23 0.49 8.90 16 4 O -0.55 -13.60 16.74 21.97 0.37 -13.23 16 5 O -0.50 -5.43 13.20 -51.40 -0.68 -6.11 16 6 C -0.11 -2.08 4.20 30.67 0.13 -1.95 16 7 C 0.13 2.76 5.95 86.36 0.51 3.27 16 8 N -0.63 -15.47 2.97 -836.89 -2.49 -17.95 16 9 C 0.70 24.74 8.29 179.06 1.49 26.23 16 10 O -0.64 -28.11 15.78 -4.02 -0.06 -28.17 16 11 N -0.73 -26.26 5.47 -478.52 -2.62 -28.88 16 12 C 0.16 7.04 5.62 86.38 0.49 7.52 16 13 C 0.03 1.28 5.09 29.85 0.15 1.43 16 14 C -0.55 -30.65 9.11 25.60 0.23 -30.42 16 15 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 16 C 0.01 0.48 5.46 84.66 0.46 0.94 16 17 N -0.93 -53.85 13.29 21.45 0.28 -53.57 16 18 Si 0.96 43.63 29.54 68.60 2.03 45.65 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 20 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 22 C 0.11 1.76 5.97 86.36 0.52 2.28 16 23 C -0.12 -1.74 4.84 30.68 0.15 -1.59 16 24 H 0.09 0.70 4.98 -2.39 -0.01 0.69 16 25 H 0.09 0.60 8.11 -2.39 -0.02 0.58 16 26 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.43 1.42 9.10 -74.06 -0.67 0.74 16 28 H 0.09 1.60 8.07 -2.39 -0.02 1.58 16 29 H 0.05 1.24 8.13 -2.39 -0.02 1.22 16 30 H 0.10 1.49 6.70 -2.39 -0.02 1.47 16 31 H 0.07 1.98 7.03 -2.39 -0.02 1.96 16 32 H 0.40 12.24 5.93 -92.71 -0.55 11.69 16 33 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 35 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 37 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 38 H 0.09 1.48 5.56 -2.39 -0.01 1.47 16 39 H 0.11 1.18 6.69 -2.39 -0.02 1.16 16 40 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.12 1.17 8.08 -2.39 -0.02 1.15 16 Total: -1.00 -75.75 331.40 1.80 -73.95 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -0.16 Total: 13.16 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: 5.13 Total: 15.15 kcal Atomic # 7 Polarization: -95.58 SS G_CDS: -4.82 Total: -100.40 kcal Atomic # 8 Polarization: -47.15 SS G_CDS: -0.37 Total: -47.52 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -75.75 1.80 -73.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592212357.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.490 kcal (2) G-P(sol) polarization free energy of solvation -75.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds