Wall clock time and date at job start Tue Mar 31 2020 06:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47592 * 300.33043 * 3 2 1 5 5 N 1.46899 * 109.47181 * 182.35855 * 4 3 2 6 6 C 1.46904 * 110.99718 * 299.29851 * 5 4 3 7 7 C 1.50696 * 109.47317 * 288.75698 * 6 5 4 8 8 H 1.07993 * 120.00168 * 1.47846 * 7 6 5 9 9 C 1.37875 * 119.99838 * 181.46825 * 7 6 5 10 10 N 1.31515 * 120.00343 * 180.02562 * 9 7 6 11 11 Si 1.86804 * 120.00044 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47367 * 89.99661 * 11 9 7 13 13 H 1.48503 * 109.46852 * 209.99622 * 11 9 7 14 14 H 1.48501 * 109.47044 * 329.99287 * 11 9 7 15 15 C 1.46895 * 111.00137 * 63.25735 * 5 4 3 16 16 C 1.50694 * 109.47338 * 66.04247 * 15 5 4 17 17 C 1.38146 * 119.89680 * 260.02429 * 16 15 5 18 18 C 1.38212 * 119.93798 * 179.97438 * 17 16 15 19 19 C 1.38154 * 119.93387 * 359.97438 * 18 17 16 20 20 C 1.38255 * 120.28082 * 0.02806 * 19 18 17 21 21 C 1.38462 * 119.88858 * 79.99804 * 16 15 5 22 22 C 1.51363 * 130.39999 * 0.07183 * 21 16 15 23 23 C 1.54351 * 105.17231 * 162.76251 * 22 21 16 24 24 C 1.51371 * 130.55885 * 179.97438 * 20 19 18 25 25 H 1.09000 * 109.46613 * 180.32978 * 3 2 1 26 26 H 1.08996 * 109.47152 * 60.33528 * 3 2 1 27 27 H 1.09007 * 109.46652 * 62.35600 * 4 3 2 28 28 H 1.09003 * 109.46772 * 302.36039 * 4 3 2 29 29 H 1.08999 * 109.47031 * 48.76427 * 6 5 4 30 30 H 1.09002 * 109.46757 * 168.75491 * 6 5 4 31 31 H 0.96998 * 120.00877 * 180.02562 * 10 9 7 32 32 H 1.08997 * 109.47029 * 306.04484 * 15 5 4 33 33 H 1.09004 * 109.46908 * 186.04530 * 15 5 4 34 34 H 1.07998 * 120.02997 * 359.95355 * 17 16 15 35 35 H 1.07995 * 120.03125 * 180.02562 * 18 17 16 36 36 H 1.07998 * 119.89078 * 179.97438 * 19 18 17 37 37 H 1.09003 * 110.30316 * 43.84073 * 22 21 16 38 38 H 1.08999 * 110.38820 * 281.73070 * 22 21 16 39 39 H 1.08998 * 110.82041 * 268.13145 * 23 22 21 40 40 H 1.08992 * 110.98831 * 144.65706 * 23 22 21 41 41 H 1.09000 * 110.30261 * 78.22917 * 24 20 19 42 42 H 1.08994 * 110.30296 * 316.17132 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -0.7275 1.2450 5 7 4.5863 -0.6778 1.2741 6 6 5.1588 -1.3363 0.0922 7 6 4.9604 -2.8262 0.2018 8 1 4.4381 -3.2403 1.0515 9 6 5.4454 -3.6605 -0.7829 10 7 5.2719 -4.9606 -0.6876 11 14 6.3492 -2.9441 -2.2525 12 1 7.8010 -2.8653 -1.9505 13 1 6.1364 -3.8144 -3.4368 14 1 5.8285 -1.5831 -2.5385 15 6 5.0640 0.7065 1.3886 16 6 4.6597 1.2684 2.7271 17 6 3.5553 2.0927 2.8227 18 6 3.1834 2.6081 4.0501 19 6 3.9166 2.2974 5.1790 20 6 5.0225 1.4728 5.0870 21 6 5.3962 0.9563 3.8574 22 6 6.6278 0.0912 4.0177 23 6 7.2215 0.4836 5.3874 24 6 5.9797 0.9871 6.1543 25 1 2.9708 1.0285 0.0059 26 1 2.9716 -0.5078 -0.8929 27 1 2.7905 -1.7667 1.2181 28 1 2.7208 -0.2440 2.1373 29 1 4.6615 -0.9685 -0.8052 30 1 6.2245 -1.1150 0.0336 31 1 5.6134 -5.5477 -1.3802 32 1 4.6247 1.3094 0.5939 33 1 6.1503 0.7245 1.3001 34 1 2.9832 2.3345 1.9392 35 1 2.3200 3.2523 4.1266 36 1 3.6256 2.7008 6.1377 37 1 7.3429 0.2999 3.2219 38 1 6.3542 -0.9639 4.0124 39 1 7.9585 1.2789 5.2768 40 1 7.6592 -0.3815 5.8855 41 1 5.5301 0.1738 6.7239 42 1 6.2534 1.8070 6.8183 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593611103.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:44 Heat of formation + Delta-G solvation = 50.788997 kcal Electronic energy + Delta-G solvation = -22183.617534 eV Core-core repulsion = 19128.150142 eV Total energy + Delta-G solvation = -3055.467392 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.15743 -37.91949 -36.07447 -35.41340 -32.77666 -31.99661 -30.40146 -28.83889 -28.05627 -26.96596 -25.34827 -23.31434 -21.81719 -20.85532 -20.34027 -19.38123 -17.54494 -16.78716 -16.07180 -15.75471 -15.30211 -14.98625 -14.92771 -14.30503 -14.14019 -13.94746 -13.55527 -13.04936 -12.89783 -12.69250 -12.60224 -12.33626 -12.18290 -12.16124 -11.75857 -11.58071 -11.47458 -11.29119 -11.08802 -10.95710 -10.87412 -10.75572 -10.64075 -10.43659 -10.15140 -9.94232 -9.38510 -8.62448 -8.48555 -8.29295 -7.51103 -6.09974 -4.08080 1.50466 1.55508 3.02196 3.04745 3.23239 3.30098 3.32502 3.84741 4.24748 4.35925 4.52302 4.70288 4.82315 5.06872 5.09085 5.09512 5.20989 5.22394 5.33062 5.39491 5.40896 5.55181 5.63984 5.69159 5.76568 5.84479 5.87955 5.91334 5.98831 6.06232 6.14293 6.28502 6.33782 6.43593 6.51872 6.61336 6.66482 6.73628 6.82673 6.90400 7.17200 7.49540 7.73468 7.80396 7.89918 8.57568 9.00268 9.50797 11.03058 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.013478 B = 0.005790 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.960149 B = 4835.025746 C = 6321.467558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C 0.223 3.777 3 C -0.075 4.075 4 C 0.070 3.930 5 N -0.508 5.508 6 C 0.155 3.845 7 C -0.509 4.509 8 H 0.082 0.918 9 C 0.070 3.930 10 N -0.898 5.898 11 Si 0.871 3.129 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.267 1.267 15 C 0.081 3.919 16 C -0.057 4.057 17 C -0.117 4.117 18 C -0.125 4.125 19 C -0.113 4.113 20 C -0.105 4.105 21 C -0.064 4.064 22 C -0.080 4.080 23 C -0.122 4.122 24 C -0.080 4.080 25 H 0.099 0.901 26 H 0.118 0.882 27 H 0.095 0.905 28 H 0.070 0.930 29 H -0.003 1.003 30 H 0.026 0.974 31 H 0.264 0.736 32 H 0.038 0.962 33 H 0.080 0.920 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.113 0.887 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.530 15.092 9.263 17.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.134 5.134 2 C -0.095 4.095 3 C -0.117 4.117 4 C -0.060 4.060 5 N -0.229 5.229 6 C 0.029 3.971 7 C -0.547 4.547 8 H 0.100 0.900 9 C -0.132 4.132 10 N -0.536 5.536 11 Si 0.698 3.302 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.192 1.192 15 C -0.047 4.047 16 C -0.058 4.058 17 C -0.136 4.136 18 C -0.143 4.143 19 C -0.132 4.132 20 C -0.105 4.105 21 C -0.064 4.064 22 C -0.117 4.117 23 C -0.159 4.159 24 C -0.117 4.117 25 H 0.117 0.883 26 H 0.136 0.864 27 H 0.113 0.887 28 H 0.088 0.912 29 H 0.015 0.985 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.131 0.869 37 H 0.092 0.908 38 H 0.110 0.890 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.067 14.637 9.572 17.521 hybrid contribution 0.581 0.700 -1.654 1.887 sum 1.648 15.336 7.918 17.339 Atomic orbital electron populations 1.81151 1.13105 1.09571 1.09565 1.29190 0.95194 0.92538 0.92569 1.20244 0.81807 1.04161 1.05469 1.22105 0.88608 1.01787 0.93497 1.62234 1.05363 1.12255 1.43083 1.20336 0.94562 0.95928 0.86235 1.20976 1.37041 0.88314 1.08361 0.90031 1.24885 0.95811 0.94689 0.97781 1.69882 1.46455 1.02696 1.34605 0.86943 0.80782 0.79420 0.83064 1.20164 1.21284 1.19186 1.21163 1.00717 0.90470 0.92329 1.19402 0.94808 0.96666 0.94879 1.20926 0.96622 0.98414 0.97621 1.20901 0.99833 1.00942 0.92652 1.20448 0.95320 0.99117 0.98286 1.20594 0.96372 0.97899 0.95627 1.20421 0.97049 0.96531 0.92447 1.21015 0.93913 0.99976 0.96753 1.22318 0.96746 1.00945 0.95909 1.21022 0.94148 1.00269 0.96227 0.88275 0.86390 0.88669 0.91208 0.98521 0.95574 0.92616 0.94426 0.90130 0.86467 0.86440 0.86930 0.90846 0.88967 0.91436 0.90708 0.90432 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.11 18.54 42.15 0.78 -7.33 16 2 C 0.22 3.49 15.43 -20.76 -0.32 3.17 16 3 C -0.07 -1.06 5.06 -29.52 -0.15 -1.21 16 4 C 0.07 1.15 4.91 -3.82 -0.02 1.13 16 5 N -0.51 -8.94 4.65 -237.52 -1.11 -10.04 16 6 C 0.16 3.22 3.63 -4.98 -0.02 3.20 16 7 C -0.51 -13.13 9.15 -34.44 -0.32 -13.44 16 8 H 0.08 2.34 7.65 -52.49 -0.40 1.94 16 9 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 10 N -0.90 -26.29 13.96 55.43 0.77 -25.52 16 11 Si 0.87 19.99 27.44 -169.99 -4.66 15.32 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.27 -5.73 6.58 56.52 0.37 -5.36 16 15 C 0.08 1.17 4.67 -4.98 -0.02 1.15 16 16 C -0.06 -0.79 4.58 -104.58 -0.48 -1.27 16 17 C -0.12 -1.48 8.63 -39.62 -0.34 -1.82 16 18 C -0.13 -1.48 10.05 -39.62 -0.40 -1.88 16 19 C -0.11 -1.35 10.03 -39.61 -0.40 -1.74 16 20 C -0.10 -1.33 6.15 -104.19 -0.64 -1.97 16 21 C -0.06 -0.89 6.02 -104.12 -0.63 -1.51 16 22 C -0.08 -1.03 6.36 -26.85 -0.17 -1.20 16 23 C -0.12 -1.26 7.08 -25.29 -0.18 -1.43 16 24 C -0.08 -0.83 6.76 -26.82 -0.18 -1.01 16 25 H 0.10 1.15 5.99 -51.93 -0.31 0.84 16 26 H 0.12 1.78 6.31 -51.93 -0.33 1.45 16 27 H 0.09 1.81 7.18 -51.93 -0.37 1.43 16 28 H 0.07 1.08 6.46 -51.93 -0.34 0.75 16 29 H 0.00 -0.05 5.01 -51.93 -0.26 -0.31 16 30 H 0.03 0.55 7.17 -51.93 -0.37 0.18 16 31 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.04 0.48 5.92 -51.93 -0.31 0.18 16 33 H 0.08 1.16 7.42 -51.93 -0.39 0.78 16 34 H 0.12 1.31 7.78 -52.49 -0.41 0.90 16 35 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.11 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.07 0.94 7.80 -51.93 -0.41 0.53 16 38 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 339.20 15.07 5.11 5.11 Total: -1.00 -29.58 339.20 -9.47 -39.05 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -6.01 Total: 1.44 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: -4.36 Total: -18.03 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: 0.45 Total: -42.89 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.66 Total: 15.32 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.58 -9.47 -39.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593611103.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.840 kcal (2) G-P(sol) polarization free energy of solvation -29.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds