Wall clock time and date at job start Tue Mar 31 2020 06:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47592 * 300.33043 * 3 2 1 5 5 N 1.46899 * 109.47181 * 182.35855 * 4 3 2 6 6 C 1.46904 * 110.99718 * 299.29851 * 5 4 3 7 7 C 1.50696 * 109.47317 * 288.75698 * 6 5 4 8 8 H 1.07993 * 120.00168 * 1.47846 * 7 6 5 9 9 C 1.37875 * 119.99838 * 181.46825 * 7 6 5 10 10 N 1.31515 * 120.00343 * 180.02562 * 9 7 6 11 11 Si 1.86804 * 120.00044 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47367 * 89.99661 * 11 9 7 13 13 H 1.48503 * 109.46852 * 209.99622 * 11 9 7 14 14 H 1.48501 * 109.47044 * 329.99287 * 11 9 7 15 15 C 1.46895 * 111.00137 * 63.25735 * 5 4 3 16 16 C 1.50694 * 109.47338 * 66.04247 * 15 5 4 17 17 C 1.38146 * 119.89680 * 260.02429 * 16 15 5 18 18 C 1.38212 * 119.93798 * 179.97438 * 17 16 15 19 19 C 1.38154 * 119.93387 * 359.97438 * 18 17 16 20 20 C 1.38255 * 120.28082 * 0.02806 * 19 18 17 21 21 C 1.38462 * 119.88858 * 79.99804 * 16 15 5 22 22 C 1.51363 * 130.39999 * 0.07183 * 21 16 15 23 23 C 1.54351 * 105.17231 * 162.76251 * 22 21 16 24 24 C 1.51371 * 130.55885 * 179.97438 * 20 19 18 25 25 H 1.09000 * 109.46613 * 180.32978 * 3 2 1 26 26 H 1.08996 * 109.47152 * 60.33528 * 3 2 1 27 27 H 1.09007 * 109.46652 * 62.35600 * 4 3 2 28 28 H 1.09003 * 109.46772 * 302.36039 * 4 3 2 29 29 H 1.08999 * 109.47031 * 48.76427 * 6 5 4 30 30 H 1.09002 * 109.46757 * 168.75491 * 6 5 4 31 31 H 0.96998 * 120.00877 * 180.02562 * 10 9 7 32 32 H 1.08997 * 109.47029 * 306.04484 * 15 5 4 33 33 H 1.09004 * 109.46908 * 186.04530 * 15 5 4 34 34 H 1.07998 * 120.02997 * 359.95355 * 17 16 15 35 35 H 1.07995 * 120.03125 * 180.02562 * 18 17 16 36 36 H 1.07998 * 119.89078 * 179.97438 * 19 18 17 37 37 H 1.09003 * 110.30316 * 43.84073 * 22 21 16 38 38 H 1.08999 * 110.38820 * 281.73070 * 22 21 16 39 39 H 1.08998 * 110.82041 * 268.13145 * 23 22 21 40 40 H 1.08992 * 110.98831 * 144.65706 * 23 22 21 41 41 H 1.09000 * 110.30261 * 78.22917 * 24 20 19 42 42 H 1.08994 * 110.30296 * 316.17132 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -0.7275 1.2450 5 7 4.5863 -0.6778 1.2741 6 6 5.1588 -1.3363 0.0922 7 6 4.9604 -2.8262 0.2018 8 1 4.4381 -3.2403 1.0515 9 6 5.4454 -3.6605 -0.7829 10 7 5.2719 -4.9606 -0.6876 11 14 6.3492 -2.9441 -2.2525 12 1 7.8010 -2.8653 -1.9505 13 1 6.1364 -3.8144 -3.4368 14 1 5.8285 -1.5831 -2.5385 15 6 5.0640 0.7065 1.3886 16 6 4.6597 1.2684 2.7271 17 6 3.5553 2.0927 2.8227 18 6 3.1834 2.6081 4.0501 19 6 3.9166 2.2974 5.1790 20 6 5.0225 1.4728 5.0870 21 6 5.3962 0.9563 3.8574 22 6 6.6278 0.0912 4.0177 23 6 7.2215 0.4836 5.3874 24 6 5.9797 0.9871 6.1543 25 1 2.9708 1.0285 0.0059 26 1 2.9716 -0.5078 -0.8929 27 1 2.7905 -1.7667 1.2181 28 1 2.7208 -0.2440 2.1373 29 1 4.6615 -0.9685 -0.8052 30 1 6.2245 -1.1150 0.0336 31 1 5.6134 -5.5477 -1.3802 32 1 4.6247 1.3094 0.5939 33 1 6.1503 0.7245 1.3001 34 1 2.9832 2.3345 1.9392 35 1 2.3200 3.2523 4.1266 36 1 3.6256 2.7008 6.1377 37 1 7.3429 0.2999 3.2219 38 1 6.3542 -0.9639 4.0124 39 1 7.9585 1.2789 5.2768 40 1 7.6592 -0.3815 5.8855 41 1 5.5301 0.1738 6.7239 42 1 6.2534 1.8070 6.8183 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593611103.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:44 Heat of formation + Delta-G solvation = 34.676005 kcal Electronic energy + Delta-G solvation = -22184.316246 eV Core-core repulsion = 19128.150142 eV Total energy + Delta-G solvation = -3056.166104 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.13138 -39.21356 -37.38969 -36.36791 -34.67006 -33.14503 -31.81833 -29.79908 -29.45545 -28.09216 -26.53546 -24.88048 -22.86273 -21.80869 -21.63675 -20.51189 -19.00389 -18.54319 -17.12002 -16.81148 -16.50248 -16.37257 -15.92775 -15.65673 -15.46159 -15.25297 -14.86319 -14.46722 -14.04781 -13.94030 -13.61581 -13.60223 -13.43531 -13.39423 -13.06956 -12.98779 -12.64213 -12.49231 -12.40237 -12.25413 -11.98395 -11.88668 -11.83879 -11.63403 -11.52818 -11.44788 -11.26384 -10.67742 -9.46661 -9.24564 -8.87643 -8.17929 -6.20250 0.55263 0.59917 1.43870 1.44258 1.53875 1.74196 1.78207 2.42781 2.83102 3.02038 3.17787 3.53599 3.63466 3.79550 4.07708 4.09252 4.17186 4.24262 4.26516 4.33348 4.47738 4.48570 4.53104 4.66544 4.76829 4.82799 4.90329 4.95879 5.02176 5.06241 5.09985 5.16037 5.17551 5.27946 5.37560 5.39789 5.46917 5.64604 5.69632 5.73814 5.92078 6.06477 6.25310 6.38701 6.58710 6.73135 6.88202 7.43007 8.98969 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.013478 B = 0.005790 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.960149 B = 4835.025746 C = 6321.467558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C 0.243 3.757 3 C -0.064 4.064 4 C 0.077 3.923 5 N -0.524 5.524 6 C 0.163 3.837 7 C -0.504 4.504 8 H 0.034 0.966 9 C 0.006 3.994 10 N -0.954 5.954 11 Si 0.939 3.061 12 H -0.270 1.270 13 H -0.294 1.294 14 H -0.234 1.234 15 C 0.084 3.916 16 C -0.072 4.072 17 C -0.123 4.123 18 C -0.128 4.128 19 C -0.118 4.118 20 C -0.115 4.115 21 C -0.088 4.088 22 C -0.081 4.081 23 C -0.116 4.116 24 C -0.078 4.078 25 H 0.137 0.863 26 H 0.115 0.885 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.015 0.985 30 H 0.032 0.968 31 H 0.263 0.737 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.134 0.866 35 H 0.140 0.860 36 H 0.134 0.866 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.038 18.408 9.104 20.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.171 5.171 2 C -0.074 4.074 3 C -0.105 4.105 4 C -0.053 4.053 5 N -0.245 5.245 6 C 0.037 3.963 7 C -0.543 4.543 8 H 0.052 0.948 9 C -0.191 4.191 10 N -0.596 5.596 11 Si 0.763 3.237 12 H -0.195 1.195 13 H -0.220 1.220 14 H -0.157 1.157 15 C -0.043 4.043 16 C -0.073 4.073 17 C -0.141 4.141 18 C -0.146 4.146 19 C -0.136 4.136 20 C -0.115 4.115 21 C -0.089 4.089 22 C -0.119 4.119 23 C -0.153 4.153 24 C -0.115 4.115 25 H 0.154 0.846 26 H 0.133 0.867 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.033 0.967 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.152 0.848 35 H 0.158 0.842 36 H 0.152 0.848 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.568 17.991 9.433 20.375 hybrid contribution 0.377 -0.347 -1.448 1.536 sum 1.944 17.644 7.984 19.464 Atomic orbital electron populations 1.81176 1.14265 1.10971 1.10685 1.29349 0.95246 0.91324 0.91472 1.20220 0.80631 1.05852 1.03807 1.21899 0.88149 1.00029 0.95197 1.62035 1.05899 1.14805 1.41810 1.20109 0.95249 0.92755 0.88188 1.21253 1.35256 0.91416 1.06365 0.94792 1.25820 0.97053 0.94822 1.01357 1.70069 1.48790 1.04644 1.36092 0.85833 0.79478 0.79954 0.78414 1.19547 1.21997 1.15651 1.21177 1.00792 0.88554 0.93729 1.19440 0.95736 0.97652 0.94462 1.21147 0.96201 0.98047 0.98719 1.21237 1.00310 1.00745 0.92308 1.20786 0.94838 0.98580 0.99446 1.20922 0.96979 0.97876 0.95769 1.20649 0.97616 0.97279 0.93325 1.20988 0.94112 0.98333 0.98420 1.22315 0.97020 1.01686 0.94283 1.21065 0.93570 1.00916 0.95975 0.84581 0.86710 0.92440 0.90253 0.96716 0.94992 0.92844 0.91933 0.90274 0.84833 0.84191 0.84794 0.91194 0.91764 0.90192 0.89860 0.90352 0.89349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -16.99 18.54 20.01 0.37 -16.62 16 2 C 0.24 7.21 15.43 89.44 1.38 8.59 16 3 C -0.06 -1.64 5.06 28.79 0.15 -1.49 16 4 C 0.08 2.49 4.91 86.30 0.42 2.91 16 5 N -0.52 -18.04 4.65 -905.37 -4.21 -22.25 16 6 C 0.16 6.61 3.63 85.56 0.31 6.92 16 7 C -0.50 -26.74 9.15 25.60 0.23 -26.50 16 8 H 0.03 2.07 7.65 -2.91 -0.02 2.05 16 9 C 0.01 0.33 5.47 84.65 0.46 0.79 16 10 N -0.95 -58.15 13.96 21.45 0.30 -57.86 16 11 Si 0.94 40.75 27.44 68.60 1.88 42.64 16 12 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 13 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 14 H -0.23 -8.80 6.58 99.48 0.66 -8.15 16 15 C 0.08 2.26 4.67 85.56 0.40 2.66 16 16 C -0.07 -1.88 4.58 -19.83 -0.09 -1.97 16 17 C -0.12 -2.74 8.63 22.24 0.19 -2.55 16 18 C -0.13 -2.64 10.05 22.24 0.22 -2.41 16 19 C -0.12 -2.50 10.03 22.25 0.22 -2.28 16 20 C -0.12 -2.72 6.15 -19.58 -0.12 -2.84 16 21 C -0.09 -2.35 6.02 -19.54 -0.12 -2.47 16 22 C -0.08 -2.11 6.36 30.52 0.19 -1.92 16 23 C -0.12 -2.24 7.08 31.53 0.22 -2.02 16 24 C -0.08 -1.49 6.76 30.53 0.21 -1.29 16 25 H 0.14 2.55 5.99 -2.39 -0.01 2.54 16 26 H 0.12 3.15 6.31 -2.39 -0.02 3.14 16 27 H 0.06 2.27 7.18 -2.38 -0.02 2.25 16 28 H 0.08 2.39 6.46 -2.39 -0.02 2.38 16 29 H 0.02 0.57 5.01 -2.39 -0.01 0.56 16 30 H 0.03 1.28 7.17 -2.39 -0.02 1.26 16 31 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 32 H 0.06 1.35 5.92 -2.39 -0.01 1.34 16 33 H 0.08 2.14 7.42 -2.39 -0.02 2.12 16 34 H 0.13 2.46 7.78 -2.91 -0.02 2.44 16 35 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 36 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 37 H 0.07 1.79 7.80 -2.39 -0.02 1.77 16 38 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -66.74 339.20 3.60 -63.15 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.97 Total: 16.82 kcal Atomic # 6 Polarization: -30.17 SS G_CDS: 4.29 Total: -25.87 kcal Atomic # 7 Polarization: -93.19 SS G_CDS: -3.54 Total: -96.73 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 1.88 Total: 42.64 kcal Total: -66.74 3.60 -63.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593611103.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.821 kcal (2) G-P(sol) polarization free energy of solvation -66.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds