Wall clock time and date at job start Tue Mar 31 2020 06:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 109.47182 * 2 1 4 4 C 1.53004 * 109.47216 * 240.00535 * 2 1 3 5 5 N 1.46497 * 109.47025 * 64.99541 * 4 2 1 6 6 C 1.34783 * 119.99698 * 179.72515 * 5 4 2 7 7 O 1.21585 * 119.99910 * 355.29662 * 6 5 4 8 8 N 1.34777 * 119.99674 * 175.29782 * 6 5 4 9 9 C 1.46925 * 120.62680 * 184.94872 * 8 6 5 10 10 C 1.52760 * 109.00799 * 233.57880 * 9 8 6 11 11 C 1.53038 * 109.38443 * 305.59235 * 10 9 8 12 12 C 1.50698 * 109.44994 * 181.25017 * 11 10 9 13 13 H 1.08005 * 120.00576 * 239.93581 * 12 11 10 14 14 C 1.37885 * 119.99819 * 59.93840 * 12 11 10 15 15 N 1.31506 * 120.00012 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99827 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47510 * 89.99851 * 16 14 12 18 18 H 1.48500 * 109.47261 * 209.99949 * 16 14 12 19 19 H 1.48500 * 109.47145 * 329.99691 * 16 14 12 20 20 C 1.53043 * 109.54213 * 61.23679 * 11 10 9 21 21 C 1.46921 * 120.63229 * 5.22194 * 8 6 5 22 22 C 1.50698 * 109.47303 * 120.00688 * 2 1 3 23 23 O 1.20823 * 120.00263 * 120.00434 * 22 2 1 24 24 O 1.34234 * 119.99514 * 299.99604 * 22 2 1 25 25 H 1.09005 * 109.47328 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47445 * 299.99368 * 1 2 3 27 27 H 1.09001 * 109.47361 * 59.99739 * 1 2 3 28 28 H 1.09007 * 109.47024 * 305.00053 * 4 2 1 29 29 H 1.09000 * 109.47075 * 185.00275 * 4 2 1 30 30 H 0.97001 * 120.00446 * 0.02562 * 5 4 2 31 31 H 1.08995 * 109.58851 * 353.41480 * 9 8 6 32 32 H 1.09004 * 109.58727 * 113.84419 * 9 8 6 33 33 H 1.09002 * 109.56797 * 185.55355 * 10 9 8 34 34 H 1.09007 * 109.35955 * 65.50056 * 10 9 8 35 35 H 1.08997 * 109.45904 * 301.21277 * 11 10 9 36 36 H 0.96999 * 120.00170 * 180.02562 * 15 14 12 37 37 H 1.08991 * 109.49683 * 178.68518 * 20 11 10 38 38 H 1.08996 * 109.52089 * 58.60216 * 20 11 10 39 39 H 1.08997 * 109.59418 * 246.15851 * 21 8 6 40 40 H 1.08997 * 109.58917 * 6.44434 * 21 8 6 41 41 H 0.96703 * 116.99887 * 180.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 1.6523 0.0355 -2.4424 6 6 2.0007 -0.4102 -3.6657 7 8 2.7087 -1.3925 -3.7760 8 7 1.5643 0.2330 -4.7668 9 6 1.8447 -0.3014 -6.1063 10 6 2.5091 0.7872 -6.9472 11 6 1.6310 2.0406 -6.9412 12 6 2.2700 3.1051 -7.7953 13 1 2.5446 4.0545 -7.3597 14 6 2.5040 2.8671 -9.1332 15 7 2.1701 1.7110 -9.6636 16 14 3.2968 4.1863 -10.1917 17 1 4.7727 4.0259 -10.1601 18 1 2.8145 4.0550 -11.5901 19 1 2.9332 5.5270 -9.6667 20 6 1.4852 2.5566 -5.5078 21 6 0.8043 1.4850 -4.6505 22 6 2.0323 -0.7105 1.2303 23 8 2.7270 -1.6928 1.1194 24 8 1.7081 -0.2519 2.4495 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.6053 -1.7198 -1.2953 29 1 3.1263 -0.7994 -1.2056 30 1 1.1487 0.8596 -2.3517 31 1 2.5138 -1.1580 -6.0253 32 1 0.9120 -0.6071 -6.5804 33 1 2.6318 0.4338 -7.9710 34 1 3.4854 1.0250 -6.5245 35 1 0.6469 1.7964 -7.3411 36 1 2.3351 1.5434 -10.6046 37 1 0.8790 3.4624 -5.5071 38 1 2.4707 2.7780 -5.0983 39 1 -0.2150 1.3280 -5.0033 40 1 0.7850 1.8053 -3.6088 41 1 2.0541 -0.7408 3.2088 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594528026.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:51 Heat of formation + Delta-G solvation = -128.927498 kcal Electronic energy + Delta-G solvation = -22790.534024 eV Core-core repulsion = 19284.131525 eV Total energy + Delta-G solvation = -3506.402499 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.81020 -39.90538 -37.21156 -36.54270 -35.75709 -33.61183 -32.59650 -30.99338 -30.04649 -26.97809 -25.99471 -24.60037 -22.98690 -22.17544 -20.78915 -20.30509 -18.96438 -18.39565 -17.69200 -17.04029 -16.34521 -16.15676 -15.62082 -15.29087 -14.65861 -14.49571 -14.02385 -13.93673 -13.57287 -13.37401 -13.03967 -12.77443 -12.61641 -12.57290 -12.24981 -11.91517 -11.85509 -11.68757 -11.48591 -11.11550 -10.93316 -10.80329 -10.66232 -10.43179 -10.05842 -9.79078 -9.55620 -9.19359 -9.02012 -8.89435 -8.36654 -7.90124 -6.01599 -4.08387 1.83945 2.42640 3.16397 3.29065 3.36294 3.38390 3.55004 4.16286 4.21114 4.41383 4.43725 4.63231 4.97765 5.28166 5.29677 5.31157 5.35433 5.57601 5.71321 5.73957 5.76064 5.86235 6.05048 6.11986 6.26794 6.42375 6.48783 6.56793 6.61857 6.79980 6.97763 7.12594 7.24624 7.48194 7.51542 7.71415 7.93643 8.06690 8.28216 8.40599 8.92956 8.94931 9.56704 11.03777 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.037261 B = 0.003143 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.275974 B = 8906.792300 C = 9162.251147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 H 0.117 0.883 4 C 0.154 3.846 5 N -0.753 5.753 6 C 0.706 3.294 7 O -0.596 6.596 8 N -0.617 5.617 9 C 0.126 3.874 10 C -0.124 4.124 11 C 0.050 3.950 12 C -0.514 4.514 13 H 0.054 0.946 14 C 0.061 3.939 15 N -0.890 5.890 16 Si 0.890 3.110 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.124 4.124 21 C 0.113 3.887 22 C 0.488 3.512 23 O -0.507 6.507 24 O -0.515 6.515 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.394 0.606 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.104 0.896 34 H 0.037 0.963 35 H 0.027 0.973 36 H 0.261 0.739 37 H 0.060 0.940 38 H 0.052 0.948 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.489 -1.392 20.101 20.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 H 0.135 0.865 4 C 0.029 3.971 5 N -0.413 5.413 6 C 0.408 3.592 7 O -0.475 6.475 8 N -0.354 5.354 9 C 0.005 3.995 10 C -0.163 4.163 11 C 0.031 3.969 12 C -0.552 4.552 13 H 0.072 0.928 14 C -0.140 4.140 15 N -0.529 5.529 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.162 4.162 21 C -0.010 4.010 22 C 0.329 3.671 23 O -0.394 6.394 24 O -0.327 6.327 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.231 0.769 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.122 0.878 34 H 0.056 0.944 35 H 0.045 0.955 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -4.947 -2.290 19.449 20.199 hybrid contribution 0.487 0.890 -0.034 1.015 sum -4.461 -1.400 19.416 19.971 Atomic orbital electron populations 1.21812 0.91216 1.03559 1.03700 1.21174 0.99012 1.01576 0.89789 0.86496 1.20873 1.00931 0.94500 0.80781 1.45179 1.62498 1.28990 1.04616 1.15793 0.80277 0.82917 0.80262 1.90889 1.41901 1.29050 1.85641 1.47450 1.57311 1.25013 1.05608 1.21690 1.00111 0.98121 0.79617 1.21956 0.97928 0.95677 1.00743 1.18617 0.95986 0.93125 0.89134 1.21183 1.40172 1.00053 0.93800 0.92775 1.24964 0.95571 0.95465 0.97974 1.69838 1.47759 1.22333 1.12920 0.86620 0.79620 0.82177 0.79721 1.20743 1.21259 1.20006 1.22015 0.99386 0.96216 0.98627 1.21711 0.95459 0.84912 0.98903 1.23128 0.76885 0.82402 0.84655 1.90782 1.35440 1.25954 1.87194 1.84511 1.72324 1.59082 1.16796 0.91616 0.90835 0.90647 0.90790 0.90566 0.76850 0.90506 0.92526 0.87807 0.94367 0.95462 0.92935 0.92139 0.92895 0.91864 0.92390 0.72948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.00 37.15 0.33 -0.59 16 2 C -0.10 -0.77 2.86 -91.77 -0.26 -1.03 16 3 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 4 C 0.15 1.83 4.42 -4.04 -0.02 1.81 16 5 N -0.75 -9.73 5.19 -65.22 -0.34 -10.07 16 6 C 0.71 12.65 8.30 -86.91 -0.72 11.93 16 7 O -0.60 -13.03 15.77 5.29 0.08 -12.95 16 8 N -0.62 -11.06 2.98 -178.77 -0.53 -11.59 16 9 C 0.13 2.55 6.41 -3.93 -0.03 2.53 16 10 C -0.12 -2.88 5.14 -26.83 -0.14 -3.02 16 11 C 0.05 1.17 2.07 -91.73 -0.19 0.98 16 12 C -0.51 -13.57 8.56 -34.44 -0.29 -13.86 16 13 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 14 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 15 N -0.89 -24.68 11.30 55.43 0.63 -24.06 16 16 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 C -0.12 -2.33 5.30 -26.61 -0.14 -2.47 16 21 C 0.11 1.74 6.39 -3.71 -0.02 1.71 16 22 C 0.49 4.41 7.63 36.00 0.27 4.68 16 23 O -0.51 -6.46 16.68 -18.75 -0.31 -6.77 16 24 O -0.52 -3.19 13.33 -39.27 -0.52 -3.71 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.39 8.11 -51.93 -0.42 -0.04 16 27 H 0.07 0.44 7.18 -51.93 -0.37 0.07 16 28 H 0.07 0.97 8.14 -51.92 -0.42 0.54 16 29 H 0.08 1.06 7.96 -51.93 -0.41 0.64 16 30 H 0.39 3.99 5.14 -40.82 -0.21 3.78 16 31 H 0.08 1.61 6.99 -51.93 -0.36 1.24 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.10 2.68 6.03 -51.93 -0.31 2.37 16 34 H 0.04 0.92 8.14 -51.92 -0.42 0.50 16 35 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 0.67 5.64 -51.93 -0.29 0.38 16 41 H 0.41 0.94 9.10 45.56 0.41 1.35 16 LS Contribution 332.96 15.07 5.02 5.02 Total: -1.00 -33.38 332.96 -7.62 -40.99 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -5.32 Total: 3.05 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -1.30 Total: 4.23 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: -0.24 Total: -45.72 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.75 Total: -23.43 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.38 -7.62 -40.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594528026.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.933 kcal (2) G-P(sol) polarization free energy of solvation -33.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds