Wall clock time and date at job start Tue Mar 31 2020 06:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 109.47182 * 2 1 4 4 C 1.53004 * 109.47216 * 240.00535 * 2 1 3 5 5 N 1.46497 * 109.47025 * 64.99541 * 4 2 1 6 6 C 1.34783 * 119.99698 * 179.72515 * 5 4 2 7 7 O 1.21585 * 119.99910 * 355.29662 * 6 5 4 8 8 N 1.34777 * 119.99674 * 175.29782 * 6 5 4 9 9 C 1.46925 * 120.62680 * 184.94872 * 8 6 5 10 10 C 1.52760 * 109.00799 * 233.57880 * 9 8 6 11 11 C 1.53038 * 109.38443 * 305.59235 * 10 9 8 12 12 C 1.50698 * 109.44994 * 181.25017 * 11 10 9 13 13 H 1.08005 * 120.00576 * 239.93581 * 12 11 10 14 14 C 1.37885 * 119.99819 * 59.93840 * 12 11 10 15 15 N 1.31506 * 120.00012 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99827 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47510 * 89.99851 * 16 14 12 18 18 H 1.48500 * 109.47261 * 209.99949 * 16 14 12 19 19 H 1.48500 * 109.47145 * 329.99691 * 16 14 12 20 20 C 1.53043 * 109.54213 * 61.23679 * 11 10 9 21 21 C 1.46921 * 120.63229 * 5.22194 * 8 6 5 22 22 C 1.50698 * 109.47303 * 120.00688 * 2 1 3 23 23 O 1.20823 * 120.00263 * 120.00434 * 22 2 1 24 24 O 1.34234 * 119.99514 * 299.99604 * 22 2 1 25 25 H 1.09005 * 109.47328 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47445 * 299.99368 * 1 2 3 27 27 H 1.09001 * 109.47361 * 59.99739 * 1 2 3 28 28 H 1.09007 * 109.47024 * 305.00053 * 4 2 1 29 29 H 1.09000 * 109.47075 * 185.00275 * 4 2 1 30 30 H 0.97001 * 120.00446 * 0.02562 * 5 4 2 31 31 H 1.08995 * 109.58851 * 353.41480 * 9 8 6 32 32 H 1.09004 * 109.58727 * 113.84419 * 9 8 6 33 33 H 1.09002 * 109.56797 * 185.55355 * 10 9 8 34 34 H 1.09007 * 109.35955 * 65.50056 * 10 9 8 35 35 H 1.08997 * 109.45904 * 301.21277 * 11 10 9 36 36 H 0.96999 * 120.00170 * 180.02562 * 15 14 12 37 37 H 1.08991 * 109.49683 * 178.68518 * 20 11 10 38 38 H 1.08996 * 109.52089 * 58.60216 * 20 11 10 39 39 H 1.08997 * 109.59418 * 246.15851 * 21 8 6 40 40 H 1.08997 * 109.58917 * 6.44434 * 21 8 6 41 41 H 0.96703 * 116.99887 * 180.02562 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 1.6523 0.0355 -2.4424 6 6 2.0007 -0.4102 -3.6657 7 8 2.7087 -1.3925 -3.7760 8 7 1.5643 0.2330 -4.7668 9 6 1.8447 -0.3014 -6.1063 10 6 2.5091 0.7872 -6.9472 11 6 1.6310 2.0406 -6.9412 12 6 2.2700 3.1051 -7.7953 13 1 2.5446 4.0545 -7.3597 14 6 2.5040 2.8671 -9.1332 15 7 2.1701 1.7110 -9.6636 16 14 3.2968 4.1863 -10.1917 17 1 4.7727 4.0259 -10.1601 18 1 2.8145 4.0550 -11.5901 19 1 2.9332 5.5270 -9.6667 20 6 1.4852 2.5566 -5.5078 21 6 0.8043 1.4850 -4.6505 22 6 2.0323 -0.7105 1.2303 23 8 2.7270 -1.6928 1.1194 24 8 1.7081 -0.2519 2.4495 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.6053 -1.7198 -1.2953 29 1 3.1263 -0.7994 -1.2056 30 1 1.1487 0.8596 -2.3517 31 1 2.5138 -1.1580 -6.0253 32 1 0.9120 -0.6071 -6.5804 33 1 2.6318 0.4338 -7.9710 34 1 3.4854 1.0250 -6.5245 35 1 0.6469 1.7964 -7.3411 36 1 2.3351 1.5434 -10.6046 37 1 0.8790 3.4624 -5.5071 38 1 2.4707 2.7780 -5.0983 39 1 -0.2150 1.3280 -5.0033 40 1 0.7850 1.8053 -3.6088 41 1 2.0541 -0.7408 3.2088 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594528026.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:50 Heat of formation + Delta-G solvation = -152.455012 kcal Electronic energy + Delta-G solvation = -22791.554253 eV Core-core repulsion = 19284.131525 eV Total energy + Delta-G solvation = -3507.422728 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.66121 -41.16382 -38.65338 -37.32221 -36.77766 -35.37478 -33.77311 -32.68726 -31.58866 -28.26258 -27.28608 -25.54083 -24.56038 -23.75175 -21.81570 -21.55091 -20.42161 -19.15299 -19.03381 -18.32338 -17.80580 -17.04064 -16.83398 -16.53402 -16.49136 -15.62538 -15.18149 -15.07516 -14.90164 -14.56401 -14.51454 -14.26833 -13.95175 -13.68879 -13.35536 -13.15256 -12.98414 -12.80433 -12.63474 -12.46896 -12.43529 -12.17904 -12.11698 -11.91049 -11.53121 -11.41306 -11.33984 -10.92074 -10.76894 -10.39077 -10.26662 -9.38500 -8.05682 -6.19319 1.16193 1.42185 1.44238 1.49293 1.52868 2.12577 2.19705 2.45321 3.01178 3.21140 3.41630 3.80563 4.06574 4.11715 4.26126 4.37056 4.40090 4.51571 4.63083 4.64260 4.72160 4.75002 4.87549 4.93739 4.95690 5.01832 5.21853 5.26767 5.28135 5.40713 5.49870 5.52704 5.59963 5.67695 6.00799 6.06422 6.14948 6.40926 6.92783 6.96399 6.99822 7.48804 7.55327 8.97655 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.037261 B = 0.003143 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.275974 B = 8906.792300 C = 9162.251147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 H 0.144 0.856 4 C 0.156 3.844 5 N -0.728 5.728 6 C 0.702 3.298 7 O -0.641 6.641 8 N -0.620 5.620 9 C 0.139 3.861 10 C -0.113 4.113 11 C 0.045 3.955 12 C -0.531 4.531 13 H 0.053 0.947 14 C 0.012 3.988 15 N -0.916 5.916 16 Si 0.949 3.051 17 H -0.282 1.282 18 H -0.285 1.285 19 H -0.266 1.266 20 C -0.117 4.117 21 C 0.117 3.883 22 C 0.495 3.505 23 O -0.553 6.553 24 O -0.503 6.503 25 H 0.056 0.944 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.412 0.588 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.018 0.982 35 H 0.006 0.994 36 H 0.260 0.740 37 H 0.076 0.924 38 H 0.044 0.956 39 H 0.079 0.921 40 H 0.106 0.894 41 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.826 0.471 22.244 23.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.106 4.106 3 H 0.162 0.838 4 C 0.031 3.969 5 N -0.388 5.388 6 C 0.403 3.597 7 O -0.523 6.523 8 N -0.356 5.356 9 C 0.015 3.985 10 C -0.152 4.152 11 C 0.027 3.973 12 C -0.569 4.569 13 H 0.071 0.929 14 C -0.187 4.187 15 N -0.556 5.556 16 Si 0.775 3.225 17 H -0.208 1.208 18 H -0.211 1.211 19 H -0.190 1.190 20 C -0.155 4.155 21 C -0.005 4.005 22 C 0.338 3.662 23 O -0.444 6.444 24 O -0.317 6.317 25 H 0.076 0.924 26 H 0.110 0.890 27 H 0.105 0.895 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.253 0.747 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.037 0.963 35 H 0.024 0.976 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.063 0.937 39 H 0.097 0.903 40 H 0.124 0.876 41 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -6.326 -0.367 21.662 22.569 hybrid contribution 0.907 0.320 -0.642 1.157 sum -5.419 -0.048 21.019 21.707 Atomic orbital electron populations 1.21838 0.89416 1.03544 1.05159 1.21115 1.00223 1.01950 0.87303 0.83846 1.20836 0.99587 0.94487 0.82014 1.44906 1.61455 1.29264 1.03174 1.15977 0.79877 0.82451 0.81354 1.90863 1.43883 1.31148 1.86420 1.47385 1.57595 1.25944 1.04648 1.21329 0.99767 0.96568 0.80805 1.21720 0.97318 0.96757 0.99385 1.18603 0.94314 0.92500 0.91895 1.21609 1.40061 1.00754 0.94501 0.92854 1.25710 0.96277 0.97295 0.99382 1.69973 1.48756 1.23818 1.13007 0.85693 0.78467 0.80184 0.78113 1.20829 1.21099 1.19026 1.21878 0.99827 0.97898 0.95927 1.21865 0.95123 0.82440 1.01116 1.23268 0.75796 0.81514 0.85642 1.90781 1.37653 1.28045 1.87873 1.84463 1.71778 1.58871 1.16584 0.92442 0.89003 0.89531 0.92359 0.92948 0.74736 0.91796 0.91875 0.90990 0.96317 0.97572 0.93119 0.90502 0.93694 0.90286 0.87631 0.70829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.00 71.98 0.65 -0.63 16 2 C -0.09 -1.13 2.86 -11.54 -0.03 -1.17 16 3 H 0.14 1.19 8.14 -2.39 -0.02 1.17 16 4 C 0.16 3.50 4.42 86.38 0.38 3.88 16 5 N -0.73 -17.03 5.19 -478.52 -2.48 -19.52 16 6 C 0.70 24.38 8.30 179.05 1.49 25.87 16 7 O -0.64 -28.36 15.77 -3.98 -0.06 -28.42 16 8 N -0.62 -21.37 2.98 -837.76 -2.49 -23.87 16 9 C 0.14 5.67 6.41 86.22 0.55 6.22 16 10 C -0.11 -5.38 5.14 30.53 0.16 -5.22 16 11 C 0.05 2.13 2.07 -11.51 -0.02 2.11 16 12 C -0.53 -28.17 8.56 25.60 0.22 -27.95 16 13 H 0.05 2.77 7.74 -2.91 -0.02 2.74 16 14 C 0.01 0.65 5.30 84.66 0.45 1.10 16 15 N -0.92 -51.99 11.30 21.45 0.24 -51.74 16 16 Si 0.95 43.02 29.54 68.60 2.03 45.04 16 17 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 18 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 19 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 20 C -0.12 -4.16 5.30 30.67 0.16 -3.99 16 21 C 0.12 3.19 6.39 86.36 0.55 3.74 16 22 C 0.49 7.98 7.63 71.24 0.54 8.52 16 23 O -0.55 -13.88 16.68 21.97 0.37 -13.51 16 24 O -0.50 -4.75 13.33 -51.46 -0.69 -5.44 16 25 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 26 H 0.09 0.55 8.11 -2.39 -0.02 0.53 16 27 H 0.09 0.61 7.18 -2.39 -0.02 0.59 16 28 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 29 H 0.05 1.45 7.96 -2.39 -0.02 1.44 16 30 H 0.41 6.53 5.14 -92.71 -0.48 6.06 16 31 H 0.06 2.77 6.99 -2.39 -0.02 2.75 16 32 H 0.06 2.49 8.14 -2.38 -0.02 2.47 16 33 H 0.07 3.89 6.03 -2.39 -0.01 3.87 16 34 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 36 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 37 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 38 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.11 1.89 5.64 -2.39 -0.01 1.88 16 41 H 0.43 0.84 9.10 -74.06 -0.67 0.16 16 Total: -1.00 -75.41 332.96 1.90 -73.50 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -0.10 Total: 11.49 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: 5.09 Total: 12.47 kcal Atomic # 7 Polarization: -90.39 SS G_CDS: -4.74 Total: -95.13 kcal Atomic # 8 Polarization: -46.99 SS G_CDS: -0.38 Total: -47.37 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Total: -75.41 1.90 -73.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594528026.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.951 kcal (2) G-P(sol) polarization free energy of solvation -75.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds