Wall clock time and date at job start Tue Mar 31 2020 06:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47592 * 2 1 4 4 C 1.52992 * 109.47248 * 120.00789 * 2 1 3 5 5 N 1.46500 * 109.47500 * 294.99744 * 4 2 1 6 6 C 1.34770 * 120.00360 * 180.02562 * 5 4 2 7 7 O 1.21581 * 120.00352 * 4.99265 * 6 5 4 8 8 N 1.34780 * 119.99845 * 185.00064 * 6 5 4 9 9 C 1.46926 * 120.62971 * 175.05481 * 8 6 5 10 10 C 1.53190 * 108.89323 * 126.45919 * 9 8 6 11 11 C 1.53042 * 109.31582 * 54.56024 * 10 9 8 12 12 C 1.50696 * 109.46005 * 178.62512 * 11 10 9 13 13 H 1.08010 * 120.00078 * 5.41128 * 12 11 10 14 14 C 1.37875 * 120.00155 * 185.40858 * 12 11 10 15 15 N 1.31511 * 119.99729 * 9.48046 * 14 12 11 16 16 Si 1.86804 * 120.00165 * 189.48006 * 14 12 11 17 17 H 1.48500 * 109.47211 * 94.99132 * 16 14 12 18 18 H 1.48500 * 109.47157 * 214.99156 * 16 14 12 19 19 H 1.48495 * 109.47099 * 334.99158 * 16 14 12 20 20 C 1.53032 * 109.53555 * 298.63704 * 11 10 9 21 21 C 1.46958 * 120.65380 * 354.86441 * 8 6 5 22 22 C 1.50705 * 109.46729 * 240.00738 * 2 1 3 23 23 O 1.20825 * 119.99738 * 239.99649 * 22 2 1 24 24 O 1.34224 * 120.00230 * 60.00068 * 22 2 1 25 25 H 1.09001 * 109.47024 * 59.99312 * 1 2 3 26 26 H 1.08999 * 109.47171 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46770 * 299.99320 * 1 2 3 28 28 H 1.09000 * 109.47530 * 174.99732 * 4 2 1 29 29 H 1.09001 * 109.47064 * 54.99879 * 4 2 1 30 30 H 0.97007 * 119.99677 * 0.02562 * 5 4 2 31 31 H 1.08995 * 109.58550 * 6.59512 * 9 8 6 32 32 H 1.09006 * 109.58577 * 246.31576 * 9 8 6 33 33 H 1.09003 * 109.49878 * 174.51287 * 10 9 8 34 34 H 1.09004 * 109.49749 * 294.57375 * 10 9 8 35 35 H 1.08998 * 109.45552 * 58.65416 * 11 10 9 36 36 H 0.97003 * 120.00181 * 180.02562 * 15 14 12 37 37 H 1.08999 * 109.49440 * 181.32002 * 20 11 10 38 38 H 1.09008 * 109.49563 * 301.40891 * 20 11 10 39 39 H 1.08998 * 109.46695 * 113.76019 * 21 8 6 40 40 H 1.09007 * 109.71428 * 353.46688 * 21 8 6 41 41 H 0.96704 * 117.00187 * 179.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 1.6526 0.0350 2.4424 6 6 1.9966 -0.4135 3.6658 7 8 2.7050 -1.3954 3.7763 8 7 1.5552 0.2263 4.7668 9 6 1.8310 -0.3113 6.1061 10 6 2.4917 0.7812 6.9527 11 6 1.6075 2.0304 6.9468 12 6 2.2379 3.0957 7.8062 13 1 3.2159 2.9346 8.2355 14 6 1.5664 4.2760 8.0445 15 7 0.3083 4.4013 7.6826 16 14 2.4436 5.6972 8.8814 17 1 2.9804 6.6228 7.8517 18 1 1.4863 6.4263 9.7515 19 1 3.5613 5.1723 9.7061 20 6 1.4648 2.5495 5.5143 21 6 0.7924 1.4771 4.6513 22 6 2.0323 -0.7103 -1.2306 23 8 2.7269 -1.6927 -1.1199 24 8 1.7080 -0.2516 -2.4497 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 3.1263 -0.7997 1.2054 29 1 1.6054 -1.7199 1.2948 30 1 1.1483 0.8588 2.3519 31 1 2.5015 -1.1668 6.0255 32 1 0.8970 -0.6219 6.5746 33 1 2.6121 0.4255 7.9760 34 1 3.4686 1.0243 6.5348 35 1 0.6231 1.7802 7.3422 36 1 -0.1641 5.2319 7.8498 37 1 0.8543 3.4525 5.5138 38 1 2.4512 2.7764 5.1096 39 1 -0.2274 1.3141 4.9999 40 1 0.7755 1.8028 3.6112 41 1 2.0540 -0.7403 -3.2090 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594528027.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:54 Heat of formation + Delta-G solvation = -130.985698 kcal Electronic energy + Delta-G solvation = -22816.911321 eV Core-core repulsion = 19310.419573 eV Total energy + Delta-G solvation = -3506.491749 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.79689 -39.91696 -37.21120 -36.53156 -35.75097 -33.56042 -32.67086 -30.97845 -30.09020 -27.00372 -25.97072 -24.59488 -22.90156 -22.31140 -20.77495 -20.31628 -18.99961 -18.37999 -17.69250 -17.01289 -16.30350 -16.16741 -15.66543 -15.30992 -14.65992 -14.49087 -14.00908 -13.95749 -13.54458 -13.36241 -13.05386 -12.76495 -12.61982 -12.57611 -12.32926 -11.90735 -11.69304 -11.62731 -11.47902 -11.36743 -10.94518 -10.78689 -10.65721 -10.41007 -10.24977 -9.80866 -9.60205 -9.09076 -9.04060 -8.97837 -8.37195 -7.93901 -6.07694 -4.08834 1.85465 2.43752 3.15771 3.27128 3.35022 3.38683 3.52635 4.17930 4.22109 4.40638 4.46152 4.66185 4.99987 5.23182 5.33147 5.35649 5.47759 5.59284 5.70106 5.78150 5.83359 5.91249 6.03533 6.13401 6.17154 6.19294 6.45900 6.55387 6.63197 6.82804 6.97839 7.07142 7.12857 7.38929 7.53114 7.62811 7.87969 7.94136 8.25544 8.38823 8.90311 8.94945 9.55039 11.00933 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.026558 B = 0.003393 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.042235 B = 8250.619011 C = 8785.993543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 H 0.118 0.882 4 C 0.155 3.845 5 N -0.752 5.752 6 C 0.707 3.293 7 O -0.600 6.600 8 N -0.618 5.618 9 C 0.129 3.871 10 C -0.124 4.124 11 C 0.048 3.952 12 C -0.514 4.514 13 H 0.055 0.945 14 C 0.064 3.936 15 N -0.889 5.889 16 Si 0.886 3.114 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.118 4.118 21 C 0.111 3.889 22 C 0.489 3.511 23 O -0.508 6.508 24 O -0.515 6.515 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.396 0.604 31 H 0.079 0.921 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.035 0.965 36 H 0.260 0.740 37 H 0.085 0.915 38 H 0.041 0.959 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.330 -5.954 -17.001 18.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 H 0.136 0.864 4 C 0.030 3.970 5 N -0.411 5.411 6 C 0.409 3.591 7 O -0.479 6.479 8 N -0.354 5.354 9 C 0.006 3.994 10 C -0.162 4.162 11 C 0.029 3.971 12 C -0.552 4.552 13 H 0.073 0.927 14 C -0.138 4.138 15 N -0.528 5.528 16 Si 0.714 3.286 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.156 4.156 21 C -0.012 4.012 22 C 0.330 3.670 23 O -0.395 6.395 24 O -0.327 6.327 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.234 0.766 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.103 0.897 38 H 0.060 0.940 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -1.941 -6.621 -16.526 17.908 hybrid contribution 0.417 1.133 -0.186 1.222 sum -1.525 -5.487 -16.712 17.656 Atomic orbital electron populations 1.21816 0.91173 1.03529 1.03805 1.21179 0.99060 1.01617 0.89748 0.86444 1.20868 1.00894 0.94468 0.80807 1.45171 1.62452 1.28987 1.04535 1.15760 0.80212 0.82795 0.80339 1.90877 1.42108 1.29160 1.85743 1.47390 1.57296 1.25585 1.05125 1.21591 1.00052 0.97286 0.80434 1.22021 0.99622 0.96578 0.97998 1.18629 0.95586 0.91125 0.91736 1.21187 1.03219 1.00523 1.30270 0.92687 1.24948 0.94550 0.98677 0.95589 1.69948 1.08567 1.26140 1.48144 0.86670 0.79685 0.82781 0.79434 1.20771 1.21337 1.19905 1.21944 0.99131 0.97434 0.97125 1.21860 0.95507 0.84630 0.99197 1.23128 0.76844 0.82369 0.84664 1.90777 1.35505 1.25984 1.87215 1.84513 1.72298 1.59063 1.16783 0.90809 0.91638 0.90572 0.90577 0.90808 0.76645 0.90220 0.92347 0.91996 0.93021 0.94707 0.93044 0.89693 0.93979 0.91809 0.92576 0.72960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.00 37.16 0.33 -0.67 16 2 C -0.10 -0.81 2.86 -91.77 -0.26 -1.07 16 3 H 0.12 0.81 8.14 -51.93 -0.42 0.38 16 4 C 0.15 1.85 4.42 -4.05 -0.02 1.84 16 5 N -0.75 -9.95 5.19 -65.23 -0.34 -10.29 16 6 C 0.71 12.52 8.30 -86.92 -0.72 11.80 16 7 O -0.60 -12.70 15.77 5.29 0.08 -12.62 16 8 N -0.62 -10.92 2.98 -178.47 -0.53 -11.45 16 9 C 0.13 2.36 6.44 -3.71 -0.02 2.34 16 10 C -0.12 -2.52 5.30 -26.61 -0.14 -2.67 16 11 C 0.05 1.11 1.93 -91.74 -0.18 0.94 16 12 C -0.51 -13.54 8.48 -34.44 -0.29 -13.83 16 13 H 0.05 1.46 7.77 -52.48 -0.41 1.05 16 14 C 0.06 1.70 5.19 -17.82 -0.09 1.60 16 15 N -0.89 -24.19 12.15 55.43 0.67 -23.52 16 16 Si 0.89 20.65 29.55 -169.99 -5.02 15.63 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 C -0.12 -2.46 5.21 -26.61 -0.14 -2.60 16 21 C 0.11 1.85 6.38 -3.69 -0.02 1.82 16 22 C 0.49 4.52 7.63 36.01 0.27 4.80 16 23 O -0.51 -6.51 16.68 -18.75 -0.31 -6.83 16 24 O -0.51 -3.33 13.33 -39.24 -0.52 -3.85 16 25 H 0.07 0.43 8.11 -51.93 -0.42 0.01 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.50 7.18 -51.93 -0.37 0.13 16 28 H 0.08 1.06 7.96 -51.93 -0.41 0.64 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.40 4.32 5.15 -40.82 -0.21 4.11 16 31 H 0.08 1.48 6.99 -51.93 -0.36 1.12 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.03 0.89 8.09 -51.93 -0.42 0.46 16 36 H 0.26 6.77 8.31 -40.82 -0.34 6.44 16 37 H 0.08 1.96 6.87 -51.93 -0.36 1.60 16 38 H 0.04 0.90 8.14 -51.92 -0.42 0.48 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.06 0.75 5.66 -51.92 -0.29 0.46 16 41 H 0.41 1.02 9.10 45.56 0.41 1.44 16 LS Contribution 334.41 15.07 5.04 5.04 Total: -1.00 -32.77 334.41 -7.57 -40.35 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -5.36 Total: 3.22 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -1.28 Total: 4.31 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: -0.20 Total: -45.25 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.75 Total: -23.29 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.77 -7.57 -40.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594528027.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.640 kcal (2) G-P(sol) polarization free energy of solvation -32.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds