Wall clock time and date at job start Tue Mar 31 2020 06:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47592 * 2 1 4 4 C 1.52992 * 109.47248 * 120.00789 * 2 1 3 5 5 N 1.46500 * 109.47500 * 294.99744 * 4 2 1 6 6 C 1.34770 * 120.00360 * 180.02562 * 5 4 2 7 7 O 1.21581 * 120.00352 * 4.99265 * 6 5 4 8 8 N 1.34780 * 119.99845 * 185.00064 * 6 5 4 9 9 C 1.46926 * 120.62971 * 175.05481 * 8 6 5 10 10 C 1.53190 * 108.89323 * 126.45919 * 9 8 6 11 11 C 1.53042 * 109.31582 * 54.56024 * 10 9 8 12 12 C 1.50696 * 109.46005 * 178.62512 * 11 10 9 13 13 H 1.08010 * 120.00078 * 5.41128 * 12 11 10 14 14 C 1.37875 * 120.00155 * 185.40858 * 12 11 10 15 15 N 1.31511 * 119.99729 * 9.48046 * 14 12 11 16 16 Si 1.86804 * 120.00165 * 189.48006 * 14 12 11 17 17 H 1.48500 * 109.47211 * 94.99132 * 16 14 12 18 18 H 1.48500 * 109.47157 * 214.99156 * 16 14 12 19 19 H 1.48495 * 109.47099 * 334.99158 * 16 14 12 20 20 C 1.53032 * 109.53555 * 298.63704 * 11 10 9 21 21 C 1.46958 * 120.65380 * 354.86441 * 8 6 5 22 22 C 1.50705 * 109.46729 * 240.00738 * 2 1 3 23 23 O 1.20825 * 119.99738 * 239.99649 * 22 2 1 24 24 O 1.34224 * 120.00230 * 60.00068 * 22 2 1 25 25 H 1.09001 * 109.47024 * 59.99312 * 1 2 3 26 26 H 1.08999 * 109.47171 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46770 * 299.99320 * 1 2 3 28 28 H 1.09000 * 109.47530 * 174.99732 * 4 2 1 29 29 H 1.09001 * 109.47064 * 54.99879 * 4 2 1 30 30 H 0.97007 * 119.99677 * 0.02562 * 5 4 2 31 31 H 1.08995 * 109.58550 * 6.59512 * 9 8 6 32 32 H 1.09006 * 109.58577 * 246.31576 * 9 8 6 33 33 H 1.09003 * 109.49878 * 174.51287 * 10 9 8 34 34 H 1.09004 * 109.49749 * 294.57375 * 10 9 8 35 35 H 1.08998 * 109.45552 * 58.65416 * 11 10 9 36 36 H 0.97003 * 120.00181 * 180.02562 * 15 14 12 37 37 H 1.08999 * 109.49440 * 181.32002 * 20 11 10 38 38 H 1.09008 * 109.49563 * 301.40891 * 20 11 10 39 39 H 1.08998 * 109.46695 * 113.76019 * 21 8 6 40 40 H 1.09007 * 109.71428 * 353.46688 * 21 8 6 41 41 H 0.96704 * 117.00187 * 179.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 1.6526 0.0350 2.4424 6 6 1.9966 -0.4135 3.6658 7 8 2.7050 -1.3954 3.7763 8 7 1.5552 0.2263 4.7668 9 6 1.8310 -0.3113 6.1061 10 6 2.4917 0.7812 6.9527 11 6 1.6075 2.0304 6.9468 12 6 2.2379 3.0957 7.8062 13 1 3.2159 2.9346 8.2355 14 6 1.5664 4.2760 8.0445 15 7 0.3083 4.4013 7.6826 16 14 2.4436 5.6972 8.8814 17 1 2.9804 6.6228 7.8517 18 1 1.4863 6.4263 9.7515 19 1 3.5613 5.1723 9.7061 20 6 1.4648 2.5495 5.5143 21 6 0.7924 1.4771 4.6513 22 6 2.0323 -0.7103 -1.2306 23 8 2.7269 -1.6927 -1.1199 24 8 1.7080 -0.2516 -2.4497 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 3.1263 -0.7997 1.2054 29 1 1.6054 -1.7199 1.2948 30 1 1.1483 0.8588 2.3519 31 1 2.5015 -1.1668 6.0255 32 1 0.8970 -0.6219 6.5746 33 1 2.6121 0.4255 7.9760 34 1 3.4686 1.0243 6.5348 35 1 0.6231 1.7802 7.3422 36 1 -0.1641 5.2319 7.8498 37 1 0.8543 3.4525 5.5138 38 1 2.4512 2.7764 5.1096 39 1 -0.2274 1.3141 4.9999 40 1 0.7755 1.8028 3.6112 41 1 2.0540 -0.7403 -3.2090 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594528027.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:54 Heat of formation + Delta-G solvation = -153.467230 kcal Electronic energy + Delta-G solvation = -22817.886194 eV Core-core repulsion = 19310.419573 eV Total energy + Delta-G solvation = -3507.466621 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.66385 -41.16648 -38.64510 -37.32814 -36.77867 -35.31272 -33.88697 -32.61146 -31.62884 -28.28316 -27.27254 -25.55659 -24.48669 -23.85094 -21.82072 -21.55022 -20.43669 -19.15702 -19.04943 -18.26767 -17.83735 -17.07871 -16.84109 -16.54118 -16.44945 -15.63787 -15.20539 -15.06581 -14.87594 -14.56837 -14.51860 -14.22775 -14.09527 -13.66775 -13.24082 -13.19783 -13.10544 -12.77513 -12.64638 -12.49814 -12.43007 -12.16804 -12.16392 -11.99558 -11.53634 -11.47318 -11.29646 -10.87705 -10.80035 -10.38316 -10.26563 -9.39341 -8.10185 -6.17299 1.15361 1.41584 1.44848 1.49852 1.53354 2.11812 2.18953 2.46027 2.98779 3.19552 3.41167 3.79378 4.05855 4.11892 4.23510 4.36848 4.39266 4.47157 4.60589 4.62749 4.69078 4.71103 4.85660 4.90899 4.93806 5.00284 5.23093 5.24931 5.26608 5.38506 5.41484 5.50724 5.59235 5.68823 6.00420 6.02737 6.07846 6.41430 6.92050 6.95896 6.96249 7.48891 7.54161 8.97135 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.026558 B = 0.003393 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.042235 B = 8250.619011 C = 8785.993543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 H 0.141 0.859 4 C 0.157 3.843 5 N -0.731 5.731 6 C 0.704 3.296 7 O -0.637 6.637 8 N -0.620 5.620 9 C 0.135 3.865 10 C -0.114 4.114 11 C 0.045 3.955 12 C -0.536 4.536 13 H 0.044 0.956 14 C 0.023 3.977 15 N -0.910 5.910 16 Si 0.942 3.058 17 H -0.276 1.276 18 H -0.284 1.284 19 H -0.275 1.275 20 C -0.109 4.109 21 C 0.120 3.880 22 C 0.496 3.504 23 O -0.551 6.551 24 O -0.504 6.504 25 H 0.090 0.910 26 H 0.059 0.941 27 H 0.083 0.917 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.410 0.590 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.039 0.961 35 H 0.010 0.990 36 H 0.262 0.738 37 H 0.063 0.937 38 H 0.033 0.967 39 H 0.071 0.929 40 H 0.096 0.904 41 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.049 -5.106 -18.576 19.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.108 4.108 3 H 0.159 0.841 4 C 0.032 3.968 5 N -0.391 5.391 6 C 0.405 3.595 7 O -0.519 6.519 8 N -0.356 5.356 9 C 0.012 3.988 10 C -0.152 4.152 11 C 0.027 3.973 12 C -0.574 4.574 13 H 0.062 0.938 14 C -0.177 4.177 15 N -0.549 5.549 16 Si 0.769 3.231 17 H -0.202 1.202 18 H -0.210 1.210 19 H -0.200 1.200 20 C -0.148 4.148 21 C -0.002 4.002 22 C 0.339 3.661 23 O -0.442 6.442 24 O -0.317 6.317 25 H 0.109 0.891 26 H 0.078 0.922 27 H 0.102 0.898 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.250 0.750 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.058 0.942 35 H 0.028 0.972 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.051 0.949 39 H 0.089 0.911 40 H 0.114 0.886 41 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -2.686 -5.739 -18.154 19.228 hybrid contribution 0.646 0.871 0.273 1.118 sum -2.040 -4.868 -17.880 18.643 Atomic orbital electron populations 1.21832 0.89556 1.03587 1.05015 1.21118 1.00152 1.01927 0.87570 0.84146 1.20836 0.99669 0.94451 0.81862 1.44978 1.61500 1.29192 1.03448 1.15926 0.79862 0.82407 0.81258 1.90855 1.43774 1.30905 1.86392 1.47371 1.57407 1.25832 1.04964 1.21459 1.00387 0.96244 0.80730 1.21871 0.98590 0.96179 0.98600 1.18595 0.94425 0.91617 0.92701 1.21514 1.03005 1.01843 1.31028 0.93763 1.25566 0.95156 1.00633 0.96324 1.70029 1.09379 1.26646 1.48884 0.85789 0.78618 0.80108 0.78593 1.20184 1.20989 1.19966 1.21718 0.98656 0.97923 0.96458 1.21787 0.94895 0.82819 1.00689 1.23214 0.75802 0.81499 0.85583 1.90776 1.37601 1.27952 1.87865 1.84464 1.71777 1.58887 1.16600 0.89098 0.92219 0.89838 0.92721 0.92129 0.74960 0.90429 0.91095 0.91929 0.94179 0.97153 0.92922 0.91806 0.94855 0.91103 0.88597 0.70794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.00 71.98 0.65 -0.86 16 2 C -0.09 -1.26 2.86 -11.54 -0.03 -1.29 16 3 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 4 C 0.16 3.58 4.42 86.38 0.38 3.96 16 5 N -0.73 -17.84 5.19 -478.56 -2.49 -20.33 16 6 C 0.70 24.04 8.30 179.06 1.49 25.52 16 7 O -0.64 -26.84 15.77 -3.97 -0.06 -26.90 16 8 N -0.62 -21.05 2.98 -836.83 -2.49 -23.54 16 9 C 0.13 4.86 6.44 86.36 0.56 5.42 16 10 C -0.11 -4.67 5.30 30.67 0.16 -4.51 16 11 C 0.05 2.12 1.93 -11.52 -0.02 2.10 16 12 C -0.54 -28.55 8.48 25.60 0.22 -28.33 16 13 H 0.04 2.39 7.77 -2.91 -0.02 2.37 16 14 C 0.02 1.21 5.19 84.65 0.44 1.65 16 15 N -0.91 -49.55 12.15 21.45 0.26 -49.29 16 16 Si 0.94 42.30 29.55 68.60 2.03 44.32 16 17 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 18 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 19 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 20 C -0.11 -4.49 5.21 30.67 0.16 -4.33 16 21 C 0.12 3.77 6.38 86.36 0.55 4.32 16 22 C 0.50 8.28 7.63 71.24 0.54 8.83 16 23 O -0.55 -13.88 16.68 21.97 0.37 -13.51 16 24 O -0.50 -5.12 13.33 -51.36 -0.68 -5.81 16 25 H 0.09 0.70 8.11 -2.39 -0.02 0.68 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.08 0.78 7.18 -2.39 -0.02 0.76 16 28 H 0.05 1.51 7.96 -2.39 -0.02 1.49 16 29 H 0.06 1.56 8.14 -2.39 -0.02 1.55 16 30 H 0.41 7.54 5.15 -92.70 -0.48 7.07 16 31 H 0.08 2.86 6.99 -2.39 -0.02 2.84 16 32 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 33 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.01 0.53 8.09 -2.39 -0.02 0.51 16 36 H 0.26 13.58 8.31 -92.71 -0.77 12.81 16 37 H 0.06 2.92 6.87 -2.39 -0.02 2.90 16 38 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.10 2.22 5.66 -2.38 -0.01 2.21 16 41 H 0.43 1.05 9.10 -74.05 -0.67 0.38 16 Total: -1.00 -71.54 334.41 1.92 -69.63 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -0.10 Total: 12.97 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: 5.09 Total: 12.47 kcal Atomic # 7 Polarization: -88.45 SS G_CDS: -4.72 Total: -93.17 kcal Atomic # 8 Polarization: -45.84 SS G_CDS: -0.38 Total: -46.22 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.32 kcal Total: -71.54 1.92 -69.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594528027.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.842 kcal (2) G-P(sol) polarization free energy of solvation -71.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds