Wall clock time and date at job start Tue Mar 31 2020 06:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 N 1.46490 * 109.47115 * 64.99762 * 4 2 1 6 6 C 1.34778 * 119.99990 * 179.97438 * 5 4 2 7 7 O 1.21588 * 119.99977 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00238 * 179.97438 * 6 5 4 9 9 C 1.46504 * 120.00182 * 180.02562 * 8 6 5 10 10 H 1.09003 * 110.01673 * 326.39866 * 9 8 6 11 11 C 1.54264 * 110.02841 * 87.83741 * 9 8 6 12 12 C 1.54885 * 104.19521 * 95.67789 * 11 9 8 13 13 C 1.54890 * 102.74945 * 37.93917 * 12 11 9 14 14 H 1.08996 * 110.48552 * 80.74054 * 13 12 11 15 15 C 1.50708 * 110.48576 * 203.37915 * 13 12 11 16 16 H 1.07997 * 119.99430 * 114.77758 * 15 13 12 17 17 C 1.37870 * 120.00078 * 294.77266 * 15 13 12 18 18 N 1.31516 * 120.00010 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 120.00229 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.46903 * 60.00316 * 19 17 15 21 21 H 1.48498 * 109.47568 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47169 * 300.00741 * 19 17 15 23 23 C 1.53869 * 110.03173 * 205.00384 * 9 8 6 24 24 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 25 25 O 1.20833 * 120.00046 * 119.99902 * 24 2 1 26 26 O 1.34228 * 120.00167 * 300.00387 * 24 2 1 27 27 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 30 30 H 1.09007 * 109.47135 * 184.99942 * 4 2 1 31 31 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 32 32 H 0.96999 * 120.00755 * 0.02562 * 5 4 2 33 33 H 0.97000 * 119.99749 * 0.02562 * 8 6 5 34 34 H 1.09005 * 110.48365 * 214.35121 * 11 9 8 35 35 H 1.08993 * 110.49150 * 336.99683 * 11 9 8 36 36 H 1.09006 * 110.75751 * 279.62394 * 12 11 9 37 37 H 1.09003 * 110.91850 * 156.33078 * 12 11 9 38 38 H 0.97007 * 119.99860 * 179.97438 * 18 17 15 39 39 H 1.08997 * 110.03887 * 0.02562 * 23 9 8 40 40 H 1.09001 * 110.03071 * 121.43435 * 23 9 8 41 41 H 0.96692 * 117.00024 * 180.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 1.6524 0.0355 -2.4423 6 6 1.9964 -0.4129 -3.6659 7 8 2.6281 -1.4456 -3.7796 8 7 1.6394 0.2830 -4.7636 9 6 2.0129 -0.2047 -6.0937 10 1 2.9786 -0.7081 -6.0489 11 6 0.9351 -1.1730 -6.6232 12 6 0.0232 -0.2822 -7.5029 13 6 1.0339 0.6727 -8.1854 14 1 1.5061 0.1829 -9.0369 15 6 0.3490 1.9431 -8.6191 16 1 0.6191 2.8846 -8.1641 17 6 -0.6223 1.9035 -9.5968 18 7 -0.9515 0.7569 -10.1506 19 14 -1.4717 3.4780 -10.1340 20 1 -0.4626 4.4271 -10.6692 21 1 -2.4686 3.1674 -11.1899 22 1 -2.1596 4.0915 -8.9695 23 6 2.0756 0.9689 -7.0868 24 6 2.0324 -0.7104 1.2304 25 8 2.7271 -1.6928 1.1195 26 8 1.7081 -0.2519 2.4496 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 3.1264 -0.7994 -1.2057 31 1 1.6055 -1.7197 -1.2953 32 1 1.1488 0.8595 -2.3518 33 1 1.1352 1.1066 -4.6729 34 1 1.3915 -1.9609 -7.2225 35 1 0.3677 -1.6012 -5.7969 36 1 -0.6811 0.2770 -6.8868 37 1 -0.5055 -0.8799 -8.2454 38 1 -1.6351 0.7290 -10.8382 39 1 1.8287 1.9013 -6.5793 40 1 3.0716 1.0345 -7.5248 41 1 2.0542 -0.7407 3.2087 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594528088.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:14 Heat of formation + Delta-G solvation = -142.801943 kcal Electronic energy + Delta-G solvation = -22306.617654 eV Core-core repulsion = 18799.613515 eV Total energy + Delta-G solvation = -3507.004140 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.84851 -39.81349 -37.44005 -36.62248 -35.79819 -33.55727 -32.71969 -31.64239 -28.14747 -27.44597 -26.38926 -24.67617 -23.71565 -21.13542 -20.82025 -19.42966 -19.29791 -18.45627 -18.10730 -17.03987 -16.55358 -16.23978 -15.63415 -15.43784 -14.73560 -14.46694 -14.37527 -14.13597 -13.79342 -13.66599 -13.07963 -12.76760 -12.61677 -12.34003 -12.00844 -11.80479 -11.68271 -11.56920 -11.01136 -10.96380 -10.85375 -10.82107 -10.57874 -10.40556 -9.94891 -9.82753 -9.55998 -9.20784 -9.14511 -8.81452 -8.45226 -8.33719 -6.01377 -4.04662 1.78918 2.36010 3.10286 3.29737 3.35575 3.36949 3.46371 4.10944 4.38534 4.41902 4.49477 4.59614 4.92197 5.26534 5.29988 5.30436 5.50650 5.58013 5.71029 5.71688 5.73430 5.87149 6.07465 6.36332 6.38403 6.42791 6.61106 6.68354 6.78078 6.94692 6.97962 7.11056 7.29608 7.40689 7.46722 7.70835 7.86732 8.02611 8.25925 8.43027 8.85540 8.97820 9.59229 11.07999 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.029643 B = 0.002948 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.355193 B = 9496.522743 C =10021.799519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 H 0.117 0.883 4 C 0.155 3.845 5 N -0.752 5.752 6 C 0.702 3.298 7 O -0.593 6.593 8 N -0.728 5.728 9 C 0.158 3.842 10 H 0.076 0.924 11 C -0.137 4.137 12 C -0.099 4.099 13 C 0.048 3.952 14 H 0.033 0.967 15 C -0.515 4.515 16 H 0.054 0.946 17 C 0.062 3.938 18 N -0.888 5.888 19 Si 0.889 3.111 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.278 1.278 23 C -0.122 4.122 24 C 0.488 3.512 25 O -0.507 6.507 26 O -0.515 6.515 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.395 0.605 33 H 0.395 0.605 34 H 0.061 0.939 35 H 0.050 0.950 36 H 0.045 0.955 37 H 0.066 0.934 38 H 0.260 0.740 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.293 0.776 21.691 21.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 H 0.135 0.865 4 C 0.030 3.970 5 N -0.410 5.410 6 C 0.402 3.598 7 O -0.471 6.471 8 N -0.383 5.383 9 C 0.053 3.947 10 H 0.094 0.906 11 C -0.175 4.175 12 C -0.138 4.138 13 C 0.029 3.971 14 H 0.051 0.949 15 C -0.553 4.553 16 H 0.072 0.928 17 C -0.139 4.139 18 N -0.526 5.526 19 Si 0.717 3.283 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.204 1.204 23 C -0.161 4.161 24 C 0.329 3.671 25 O -0.394 6.394 26 O -0.327 6.327 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.229 0.771 33 H 0.229 0.771 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 2.816 -0.340 21.044 21.234 hybrid contribution -0.806 1.311 0.322 1.573 sum 2.010 0.972 21.366 21.482 Atomic orbital electron populations 1.21822 0.91132 1.03656 1.03776 1.21170 0.99073 1.01489 0.89753 0.86513 1.20877 1.00783 0.94679 0.80670 1.45010 1.62431 1.28899 1.04668 1.15955 0.79981 0.83596 0.80255 1.90917 1.45607 1.24784 1.85779 1.45477 1.59939 1.27651 1.05190 1.21654 0.97838 0.95780 0.79397 0.90598 1.22854 0.97713 0.97826 0.99147 1.22451 0.97516 0.96902 0.96886 1.19462 0.90833 0.94867 0.91896 0.94910 1.21128 1.20360 0.93151 1.20639 0.92805 1.24983 0.96931 0.95844 0.96179 1.69953 1.31501 1.24405 1.26785 0.86719 0.79361 0.83927 0.78289 1.20355 1.21386 1.20384 1.22613 1.00488 0.95937 0.97015 1.23133 0.76883 0.82413 0.84687 1.90787 1.35485 1.25922 1.87208 1.84506 1.72315 1.59077 1.16802 0.90844 0.91579 0.90529 0.90603 0.90643 0.77126 0.77091 0.92074 0.93169 0.93596 0.91552 0.93015 0.92064 0.92791 0.72905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.00 37.16 0.33 -0.53 16 2 C -0.10 -0.67 2.86 -91.77 -0.26 -0.94 16 3 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 4 C 0.15 1.65 4.41 -4.04 -0.02 1.63 16 5 N -0.75 -8.31 5.29 -65.23 -0.34 -8.65 16 6 C 0.70 11.10 8.56 -86.92 -0.74 10.36 16 7 O -0.59 -11.95 16.00 5.29 0.08 -11.86 16 8 N -0.73 -11.23 5.03 -57.58 -0.29 -11.52 16 9 C 0.16 2.87 3.25 -66.81 -0.22 2.65 16 10 H 0.08 1.44 7.56 -51.93 -0.39 1.05 16 11 C -0.14 -2.67 6.54 -25.08 -0.16 -2.84 16 12 C -0.10 -2.24 5.75 -24.74 -0.14 -2.39 16 13 C 0.05 1.14 2.72 -90.11 -0.25 0.90 16 14 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 15 C -0.51 -13.52 8.46 -34.44 -0.29 -13.81 16 16 H 0.05 1.38 7.54 -52.49 -0.40 0.98 16 17 C 0.06 1.69 5.35 -17.82 -0.10 1.59 16 18 N -0.89 -25.08 12.29 55.43 0.68 -24.40 16 19 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 C -0.12 -2.38 6.13 -25.62 -0.16 -2.54 16 24 C 0.49 4.09 7.63 36.00 0.27 4.36 16 25 O -0.51 -6.14 16.68 -18.76 -0.31 -6.45 16 26 O -0.51 -2.93 13.33 -39.25 -0.52 -3.46 16 27 H 0.07 0.36 8.11 -51.93 -0.42 -0.06 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.41 7.18 -51.93 -0.37 0.04 16 30 H 0.08 0.94 7.96 -51.93 -0.41 0.53 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.39 3.09 7.67 -40.82 -0.31 2.77 16 33 H 0.40 5.22 8.33 -40.82 -0.34 4.88 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.05 0.97 8.04 -51.93 -0.42 0.55 16 36 H 0.05 1.05 8.05 -51.93 -0.42 0.63 16 37 H 0.07 1.65 7.55 -51.93 -0.39 1.26 16 38 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 39 H 0.06 1.15 7.13 -51.93 -0.37 0.77 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.41 0.76 9.10 45.56 0.41 1.17 16 LS Contribution 341.52 15.07 5.15 5.15 Total: -1.00 -33.76 341.52 -7.81 -41.57 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -5.50 Total: 5.47 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -1.73 Total: -1.55 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: 0.05 Total: -44.56 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.75 Total: -21.77 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.76 -7.81 -41.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594528088.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.236 kcal (2) G-P(sol) polarization free energy of solvation -33.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds