Wall clock time and date at job start Tue Mar 31 2020 06:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 N 1.46490 * 109.47115 * 64.99762 * 4 2 1 6 6 C 1.34778 * 119.99990 * 179.97438 * 5 4 2 7 7 O 1.21588 * 119.99977 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00238 * 179.97438 * 6 5 4 9 9 C 1.46504 * 120.00182 * 180.02562 * 8 6 5 10 10 H 1.09003 * 110.01673 * 326.39866 * 9 8 6 11 11 C 1.54264 * 110.02841 * 87.83741 * 9 8 6 12 12 C 1.54885 * 104.19521 * 95.67789 * 11 9 8 13 13 C 1.54890 * 102.74945 * 37.93917 * 12 11 9 14 14 H 1.08996 * 110.48552 * 80.74054 * 13 12 11 15 15 C 1.50708 * 110.48576 * 203.37915 * 13 12 11 16 16 H 1.07997 * 119.99430 * 114.77758 * 15 13 12 17 17 C 1.37870 * 120.00078 * 294.77266 * 15 13 12 18 18 N 1.31516 * 120.00010 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 120.00229 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.46903 * 60.00316 * 19 17 15 21 21 H 1.48498 * 109.47568 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47169 * 300.00741 * 19 17 15 23 23 C 1.53869 * 110.03173 * 205.00384 * 9 8 6 24 24 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 25 25 O 1.20833 * 120.00046 * 119.99902 * 24 2 1 26 26 O 1.34228 * 120.00167 * 300.00387 * 24 2 1 27 27 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 30 30 H 1.09007 * 109.47135 * 184.99942 * 4 2 1 31 31 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 32 32 H 0.96999 * 120.00755 * 0.02562 * 5 4 2 33 33 H 0.97000 * 119.99749 * 0.02562 * 8 6 5 34 34 H 1.09005 * 110.48365 * 214.35121 * 11 9 8 35 35 H 1.08993 * 110.49150 * 336.99683 * 11 9 8 36 36 H 1.09006 * 110.75751 * 279.62394 * 12 11 9 37 37 H 1.09003 * 110.91850 * 156.33078 * 12 11 9 38 38 H 0.97007 * 119.99860 * 179.97438 * 18 17 15 39 39 H 1.08997 * 110.03887 * 0.02562 * 23 9 8 40 40 H 1.09001 * 110.03071 * 121.43435 * 23 9 8 41 41 H 0.96692 * 117.00024 * 180.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 1.6524 0.0355 -2.4423 6 6 1.9964 -0.4129 -3.6659 7 8 2.6281 -1.4456 -3.7796 8 7 1.6394 0.2830 -4.7636 9 6 2.0129 -0.2047 -6.0937 10 1 2.9786 -0.7081 -6.0489 11 6 0.9351 -1.1730 -6.6232 12 6 0.0232 -0.2822 -7.5029 13 6 1.0339 0.6727 -8.1854 14 1 1.5061 0.1829 -9.0369 15 6 0.3490 1.9431 -8.6191 16 1 0.6191 2.8846 -8.1641 17 6 -0.6223 1.9035 -9.5968 18 7 -0.9515 0.7569 -10.1506 19 14 -1.4717 3.4780 -10.1340 20 1 -0.4626 4.4271 -10.6692 21 1 -2.4686 3.1674 -11.1899 22 1 -2.1596 4.0915 -8.9695 23 6 2.0756 0.9689 -7.0868 24 6 2.0324 -0.7104 1.2304 25 8 2.7271 -1.6928 1.1195 26 8 1.7081 -0.2519 2.4496 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 3.1264 -0.7994 -1.2057 31 1 1.6055 -1.7197 -1.2953 32 1 1.1488 0.8595 -2.3518 33 1 1.1352 1.1066 -4.6729 34 1 1.3915 -1.9609 -7.2225 35 1 0.3677 -1.6012 -5.7969 36 1 -0.6811 0.2770 -6.8868 37 1 -0.5055 -0.8799 -8.2454 38 1 -1.6351 0.7290 -10.8382 39 1 1.8287 1.9013 -6.5793 40 1 3.0716 1.0345 -7.5248 41 1 2.0542 -0.7407 3.2087 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594528088.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:13 Heat of formation + Delta-G solvation = -167.610273 kcal Electronic energy + Delta-G solvation = -22307.693424 eV Core-core repulsion = 18799.613515 eV Total energy + Delta-G solvation = -3508.079910 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.58110 -41.02406 -38.92554 -37.32181 -36.73294 -35.18968 -34.03839 -33.04211 -29.92659 -28.87530 -27.33724 -25.82858 -25.20400 -22.36263 -21.53774 -21.08607 -20.86388 -19.36072 -19.07349 -18.47993 -17.74166 -17.13591 -16.79949 -16.64138 -16.41625 -15.92036 -15.51946 -15.32714 -14.87376 -14.60115 -14.41371 -14.04385 -13.79382 -13.52664 -13.17240 -12.90757 -12.72089 -12.66777 -12.51784 -12.41444 -12.35337 -12.18582 -12.12466 -11.63161 -11.53313 -11.40818 -11.26163 -11.03347 -10.77943 -10.41445 -10.32492 -9.70071 -8.06315 -6.15992 1.15586 1.46391 1.47326 1.53220 1.54758 2.19109 2.25801 2.48097 3.24923 3.41416 3.42596 3.80127 3.99962 4.07265 4.08088 4.27374 4.39481 4.63655 4.69460 4.74900 4.80683 4.85861 4.94312 4.99628 5.05641 5.15110 5.23320 5.26948 5.30171 5.42868 5.48094 5.59590 5.70153 5.75976 5.95111 6.02537 6.09251 6.42140 6.95402 6.95751 7.16282 7.51598 7.63762 9.02412 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.029643 B = 0.002948 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.355193 B = 9496.522743 C =10021.799519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 H 0.147 0.853 4 C 0.157 3.843 5 N -0.728 5.728 6 C 0.700 3.300 7 O -0.638 6.638 8 N -0.720 5.720 9 C 0.170 3.830 10 H 0.072 0.928 11 C -0.126 4.126 12 C -0.088 4.088 13 C 0.039 3.961 14 H -0.002 1.002 15 C -0.525 4.525 16 H 0.061 0.939 17 C 0.009 3.991 18 N -0.922 5.922 19 Si 0.953 3.047 20 H -0.272 1.272 21 H -0.292 1.292 22 H -0.267 1.267 23 C -0.109 4.109 24 C 0.494 3.506 25 O -0.553 6.553 26 O -0.504 6.504 27 H 0.089 0.911 28 H 0.053 0.947 29 H 0.086 0.914 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.415 0.585 33 H 0.409 0.591 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.042 0.958 37 H 0.034 0.966 38 H 0.258 0.742 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.813 3.011 23.669 23.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.104 4.104 3 H 0.164 0.836 4 C 0.032 3.968 5 N -0.387 5.387 6 C 0.400 3.600 7 O -0.520 6.520 8 N -0.375 5.375 9 C 0.064 3.936 10 H 0.090 0.910 11 C -0.165 4.165 12 C -0.126 4.126 13 C 0.020 3.980 14 H 0.016 0.984 15 C -0.563 4.563 16 H 0.079 0.921 17 C -0.189 4.189 18 N -0.562 5.562 19 Si 0.779 3.221 20 H -0.198 1.198 21 H -0.218 1.218 22 H -0.192 1.192 23 C -0.147 4.147 24 C 0.337 3.663 25 O -0.443 6.443 26 O -0.318 6.318 27 H 0.108 0.892 28 H 0.073 0.927 29 H 0.105 0.895 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.253 0.747 33 H 0.246 0.754 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.067 0.933 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges 2.306 1.964 23.093 23.291 hybrid contribution -0.652 0.602 -0.237 0.919 sum 1.654 2.567 22.856 23.059 Atomic orbital electron populations 1.21836 0.89812 1.03351 1.05086 1.21110 0.99874 1.02083 0.87372 0.83573 1.20805 0.99645 0.94372 0.81985 1.44738 1.61417 1.29282 1.03224 1.16096 0.79591 0.83001 0.81293 1.90895 1.47635 1.26876 1.86565 1.45199 1.60048 1.28107 1.04162 1.21305 0.97028 0.94785 0.80443 0.91002 1.22742 0.97520 0.97615 0.98641 1.22218 0.97346 0.96692 0.96354 1.19441 0.92078 0.94176 0.92273 0.98371 1.21536 1.20150 0.94181 1.20479 0.92084 1.25784 0.97870 0.98757 0.96500 1.70103 1.32171 1.26481 1.27420 0.85698 0.78230 0.80234 0.77977 1.19770 1.21762 1.19169 1.22421 0.99449 0.96914 0.95915 1.23312 0.75805 0.81544 0.85662 1.90784 1.37699 1.27978 1.87877 1.84461 1.71797 1.58895 1.16644 0.89192 0.92740 0.89542 0.92518 0.92787 0.74745 0.75447 0.92344 0.92676 0.93919 0.94730 0.93307 0.90673 0.91963 0.70842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.00 71.98 0.65 -0.63 16 2 C -0.09 -1.00 2.86 -11.54 -0.03 -1.03 16 3 H 0.15 0.92 8.14 -2.39 -0.02 0.90 16 4 C 0.16 3.19 4.41 86.38 0.38 3.57 16 5 N -0.73 -14.55 5.29 -478.54 -2.53 -17.08 16 6 C 0.70 21.12 8.56 179.05 1.53 22.65 16 7 O -0.64 -25.53 16.00 -3.99 -0.06 -25.59 16 8 N -0.72 -20.75 5.03 -454.35 -2.29 -23.03 16 9 C 0.17 5.99 3.25 45.71 0.15 6.14 16 10 H 0.07 2.66 7.56 -2.39 -0.02 2.64 16 11 C -0.13 -4.92 6.54 31.67 0.21 -4.71 16 12 C -0.09 -4.01 5.75 31.88 0.18 -3.83 16 13 C 0.04 1.87 2.72 -10.46 -0.03 1.84 16 14 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 15 C -0.53 -27.37 8.46 25.60 0.22 -27.16 16 16 H 0.06 3.03 7.54 -2.91 -0.02 3.00 16 17 C 0.01 0.51 5.35 84.65 0.45 0.96 16 18 N -0.92 -53.06 12.29 21.44 0.26 -52.79 16 19 Si 0.95 42.14 29.54 68.60 2.03 44.16 16 20 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 21 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 23 C -0.11 -4.10 6.13 31.32 0.19 -3.91 16 24 C 0.49 7.47 7.63 71.23 0.54 8.02 16 25 O -0.55 -13.28 16.68 21.94 0.37 -12.91 16 26 O -0.50 -4.44 13.33 -51.40 -0.68 -5.12 16 27 H 0.09 0.56 8.11 -2.39 -0.02 0.54 16 28 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.09 0.62 7.18 -2.38 -0.02 0.60 16 30 H 0.06 1.40 7.96 -2.38 -0.02 1.38 16 31 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.41 5.05 7.67 -92.71 -0.71 4.34 16 33 H 0.41 9.58 8.33 -92.71 -0.77 8.81 16 34 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 35 H 0.05 2.08 8.04 -2.39 -0.02 2.07 16 36 H 0.04 1.94 8.05 -2.38 -0.02 1.92 16 37 H 0.03 1.77 7.55 -2.39 -0.02 1.75 16 38 H 0.26 14.27 8.31 -92.70 -0.77 13.50 16 39 H 0.07 2.62 7.13 -2.39 -0.02 2.60 16 40 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.43 0.59 9.10 -74.06 -0.67 -0.08 16 Total: -1.00 -74.43 341.52 0.44 -73.99 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -1.09 Total: 16.48 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: 4.44 Total: 1.91 kcal Atomic # 7 Polarization: -88.36 SS G_CDS: -4.55 Total: -92.91 kcal Atomic # 8 Polarization: -43.24 SS G_CDS: -0.38 Total: -43.63 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Total: -74.43 0.44 -73.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594528088.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.619 kcal (2) G-P(sol) polarization free energy of solvation -74.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds