Wall clock time and date at job start Tue Mar 31 2020 05:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47103 * 2 1 4 4 C 1.53003 * 109.47530 * 240.00181 * 2 1 3 5 5 N 1.46500 * 109.47038 * 119.99916 * 2 1 3 6 6 N 1.28776 * 125.45069 * 359.97414 * 5 2 1 7 7 N 1.28996 * 108.73042 * 180.02562 * 6 5 2 8 8 C 1.33318 * 107.35089 * 0.02562 * 7 6 5 9 9 C 1.50701 * 126.54801 * 180.02562 * 8 7 6 10 10 S 1.81393 * 109.47519 * 90.02138 * 9 8 7 11 11 C 1.81399 * 103.00238 * 180.02562 * 10 9 8 12 12 C 1.53006 * 109.47007 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.46623 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.46953 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99816 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00344 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00355 * 180.02562 * 16 14 13 18 18 Si 1.86803 * 119.99771 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46889 * 89.99924 * 18 16 14 20 20 H 1.48498 * 109.47131 * 210.00227 * 18 16 14 21 21 H 1.48500 * 109.47362 * 330.00383 * 18 16 14 22 22 N 1.28886 * 125.44806 * 180.31379 * 5 2 1 23 23 H 1.08996 * 109.47420 * 299.99905 * 1 2 3 24 24 H 1.08997 * 109.46827 * 60.00046 * 1 2 3 25 25 H 1.08996 * 109.47043 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47466 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47577 * 300.00079 * 3 2 1 28 28 H 1.09007 * 109.47308 * 60.00027 * 3 2 1 29 29 H 1.09002 * 109.46616 * 300.00101 * 4 2 1 30 30 H 1.08994 * 109.46564 * 59.99757 * 4 2 1 31 31 H 1.08995 * 109.47062 * 180.02562 * 4 2 1 32 32 H 1.08997 * 109.46788 * 330.01631 * 9 8 7 33 33 H 1.09001 * 109.47187 * 210.02252 * 9 8 7 34 34 H 1.08993 * 109.47659 * 59.99879 * 11 10 9 35 35 H 1.09000 * 109.46960 * 299.99674 * 11 10 9 36 36 H 1.09000 * 109.47050 * 299.99686 * 12 11 10 37 37 H 1.09001 * 109.46801 * 59.99798 * 12 11 10 38 38 H 1.09000 * 109.47486 * 299.99829 * 13 12 11 39 39 H 1.09001 * 109.47362 * 60.00551 * 13 12 11 40 40 H 0.96991 * 119.99886 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 2.0183 -0.6906 1.1962 6 7 1.2782 -1.2171 2.1091 7 7 2.0399 -1.7373 3.0109 8 6 3.3017 -1.5218 2.6382 9 6 4.5420 -1.9498 3.3795 10 16 5.0403 -3.6021 2.8211 11 6 6.5232 -3.9373 3.8106 12 6 7.0742 -5.3189 3.4518 13 6 8.3253 -5.6013 4.2860 14 6 8.8677 -6.9623 3.9330 15 1 8.3701 -7.5653 3.1880 16 6 9.9992 -7.4377 4.5613 17 7 10.4728 -8.6253 4.2530 18 14 10.8603 -6.3944 5.8495 19 1 10.2926 -6.6933 7.1888 20 1 12.3127 -6.7039 5.8471 21 1 10.6601 -4.9566 5.5368 22 7 3.2574 -0.8630 1.5063 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1300 1.4426 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6767 -1.7489 -1.2492 30 1 1.6767 -0.2073 -2.1391 31 1 3.1301 -0.7216 -1.2490 32 1 4.3352 -1.9748 4.4494 33 1 5.3463 -1.2414 3.1814 34 1 6.2666 -3.9128 4.8696 35 1 7.2782 -3.1793 3.6020 36 1 6.3191 -6.0767 3.6607 37 1 7.3308 -5.3438 2.3927 38 1 9.0803 -4.8435 4.0767 39 1 8.0691 -5.5762 5.3452 40 1 11.2690 -8.9595 4.6947 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594567143.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:40 Heat of formation + Delta-G solvation = 84.268976 kcal Electronic energy + Delta-G solvation = -19250.935435 eV Core-core repulsion = 16228.823451 eV Total energy + Delta-G solvation = -3022.111984 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.137 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -45.48495 -38.67325 -36.38338 -34.76453 -34.23126 -34.14395 -30.30873 -29.79153 -28.52774 -28.37071 -25.67890 -25.12814 -23.45075 -21.94398 -21.62920 -18.96484 -18.45972 -18.05713 -17.22012 -16.34527 -16.31535 -16.03066 -15.40038 -15.27794 -15.06391 -14.99920 -14.55699 -14.41968 -13.89043 -13.85658 -13.51274 -13.44918 -13.23731 -13.01056 -12.95809 -12.85561 -12.65216 -12.58480 -12.19710 -12.02134 -11.99050 -11.82228 -11.72282 -11.55754 -11.35480 -11.12699 -10.81893 -10.75257 -8.73641 -8.27955 -6.33248 -0.00612 0.29799 0.88803 1.31687 1.39008 1.41297 1.53153 1.61770 2.38428 2.65246 3.06015 3.07421 3.50836 3.53223 3.64236 4.04040 4.07636 4.10937 4.23503 4.41664 4.46957 4.52167 4.54103 4.57899 4.59937 4.71418 4.71527 4.72583 4.78926 4.86671 5.01885 5.01926 5.10847 5.21116 5.29854 5.46387 5.55016 5.65881 6.28644 6.74859 7.24664 7.31177 8.89181 Molecular weight = 284.14amu Principal moments of inertia in cm(-1) A = 0.042539 B = 0.002493 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.060081 B =11226.998445 C =11358.038472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.162 3.838 3 C -0.153 4.153 4 C -0.157 4.157 5 N -0.117 5.117 6 N -0.074 5.074 7 N -0.302 5.302 8 C 0.171 3.829 9 C 0.016 3.984 10 S -0.281 6.281 11 C -0.065 4.065 12 C -0.080 4.080 13 C -0.004 4.004 14 C -0.537 4.537 15 H 0.026 0.974 16 C 0.000 4.000 17 N -0.954 5.954 18 Si 0.957 3.043 19 H -0.266 1.266 20 H -0.286 1.286 21 H -0.239 1.239 22 N -0.297 5.297 23 H 0.069 0.931 24 H 0.125 0.875 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.125 0.875 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.127 0.873 31 H 0.064 0.936 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.049 0.951 37 H 0.051 0.949 38 H 0.029 0.971 39 H 0.027 0.973 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.632 26.465 -8.899 34.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.083 3.917 3 C -0.211 4.211 4 C -0.215 4.215 5 N -0.033 5.033 6 N -0.066 5.066 7 N -0.173 5.173 8 C -0.111 4.111 9 C -0.135 4.135 10 S -0.055 6.055 11 C -0.213 4.213 12 C -0.119 4.119 13 C -0.043 4.043 14 C -0.575 4.575 15 H 0.045 0.955 16 C -0.197 4.197 17 N -0.595 5.595 18 Si 0.779 3.221 19 H -0.191 1.191 20 H -0.212 1.212 21 H -0.162 1.162 22 N -0.149 5.149 23 H 0.088 0.912 24 H 0.144 0.856 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.144 0.856 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.145 0.855 31 H 0.083 0.917 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.048 0.952 39 H 0.045 0.955 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.691 25.833 -9.774 34.511 hybrid contribution 1.650 0.039 1.446 2.195 sum -19.041 25.872 -8.328 33.185 Atomic orbital electron populations 1.22145 0.88567 1.04334 1.05705 1.22054 0.97708 0.93503 0.78461 1.22261 1.02630 0.90807 1.05443 1.22279 1.02570 1.00786 0.95852 1.51064 1.00540 1.33452 1.18258 1.78850 1.22121 1.09664 0.95949 1.75830 1.01237 1.19234 1.21030 1.24768 0.94768 0.99240 0.92338 1.21419 0.93225 0.96814 1.02009 1.87377 1.37544 1.21678 1.58915 1.23467 0.95147 1.01162 1.01541 1.21043 0.97256 0.93673 0.99943 1.19503 0.93979 0.94753 0.96071 1.21498 1.11047 1.02377 1.22556 0.95534 1.26116 0.97816 0.96270 0.99480 1.70085 1.24315 1.20149 1.44934 0.85566 0.77101 0.80560 0.78853 1.19085 1.21190 1.16183 1.74582 1.04030 1.20231 1.16052 0.91231 0.85640 0.91812 0.91496 0.85644 0.91989 0.92741 0.85501 0.91679 0.85383 0.85196 0.88384 0.88280 0.93177 0.93065 0.95242 0.95472 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 7.91 71.98 0.57 -0.62 16 2 C 0.16 1.91 1.30 3.61 0.00 1.91 16 3 C -0.15 -1.17 8.66 71.98 0.62 -0.55 16 4 C -0.16 -1.56 8.67 71.98 0.62 -0.94 16 5 N -0.12 -2.52 3.73 -152.39 -0.57 -3.08 16 6 N -0.07 -1.92 12.24 37.02 0.45 -1.47 16 7 N -0.30 -8.87 12.50 -51.26 -0.64 -9.51 16 8 C 0.17 4.56 7.63 138.55 1.06 5.62 16 9 C 0.02 0.36 6.57 71.24 0.47 0.83 16 10 S -0.28 -8.41 21.72 -56.49 -1.23 -9.64 16 11 C -0.07 -1.93 5.94 71.98 0.43 -1.50 16 12 C -0.08 -3.16 5.16 30.60 0.16 -3.01 16 13 C 0.00 -0.18 4.04 29.85 0.12 -0.06 16 14 C -0.54 -31.45 9.66 25.60 0.25 -31.20 16 15 H 0.03 1.73 7.99 -2.91 -0.02 1.71 16 16 C 0.00 -0.03 5.47 84.65 0.46 0.44 16 17 N -0.95 -60.83 13.96 21.45 0.30 -60.53 16 18 Si 0.96 43.82 27.47 68.60 1.88 45.71 16 19 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 20 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 21 H -0.24 -9.84 6.54 99.48 0.65 -9.19 16 22 N -0.30 -7.36 11.83 -51.20 -0.61 -7.96 16 23 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 24 H 0.13 0.08 8.14 -2.39 -0.02 0.06 16 25 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.13 0.08 8.14 -2.39 -0.02 0.06 16 28 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.13 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.13 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.10 2.58 8.14 -2.39 -0.02 2.57 16 35 H 0.10 2.57 8.14 -2.39 -0.02 2.56 16 36 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.03 1.29 7.20 -2.39 -0.02 1.27 16 39 H 0.03 1.18 7.57 -2.39 -0.02 1.16 16 40 H 0.27 15.77 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -75.53 348.39 5.30 -70.23 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: 0.94 Total: 5.33 kcal Atomic # 6 Polarization: -33.84 SS G_CDS: 4.76 Total: -29.08 kcal Atomic # 7 Polarization: -81.49 SS G_CDS: -1.06 Total: -82.55 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.88 Total: 45.71 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -1.23 Total: -9.64 kcal Total: -75.53 5.30 -70.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594567143.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.498 kcal (2) G-P(sol) polarization free energy of solvation -75.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds