Wall clock time and date at job start Tue Mar 31 2020 06:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00255 * 2 1 4 4 H 1.48503 * 109.47416 * 269.99835 * 3 2 1 5 5 H 1.48507 * 109.47343 * 29.99745 * 3 2 1 6 6 H 1.48499 * 109.47569 * 149.99417 * 3 2 1 7 7 C 1.37884 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00027 * 175.08269 * 7 2 1 9 9 C 1.50700 * 119.99493 * 355.36229 * 7 2 1 10 10 C 1.53002 * 115.54672 * 279.20521 * 9 7 2 11 11 S 1.81398 * 109.47466 * 294.73931 * 10 9 7 12 12 C 1.81399 * 102.99832 * 180.02562 * 11 10 9 13 13 C 1.53011 * 109.46887 * 179.97438 * 12 11 10 14 14 C 1.52995 * 109.46959 * 179.97438 * 13 12 11 15 15 C 1.53003 * 109.47125 * 179.97438 * 14 13 12 16 16 C 1.53174 * 109.54590 * 294.56025 * 15 14 13 17 17 C 1.53092 * 109.16588 * 183.14633 * 16 15 14 18 18 O 1.42905 * 109.41235 * 57.61012 * 17 16 15 19 19 C 1.42910 * 114.09570 * 298.84414 * 18 17 16 20 20 C 1.53088 * 109.41484 * 61.15870 * 19 18 17 21 21 C 1.53001 * 117.49832 * 133.50573 * 9 7 2 22 22 C 1.53003 * 117.50133 * 64.88144 * 9 7 2 23 23 H 0.97000 * 119.99877 * 5.01063 * 1 2 3 24 24 H 1.08999 * 109.47450 * 54.74449 * 10 9 7 25 25 H 1.09006 * 109.46501 * 174.74066 * 10 9 7 26 26 H 1.08992 * 109.47589 * 300.00054 * 12 11 10 27 27 H 1.09002 * 109.47101 * 60.00282 * 12 11 10 28 28 H 1.09002 * 109.46988 * 300.00542 * 13 12 11 29 29 H 1.09002 * 109.46909 * 60.00300 * 13 12 11 30 30 H 1.08992 * 109.47757 * 300.00337 * 14 13 12 31 31 H 1.09002 * 109.46862 * 60.00520 * 14 13 12 32 32 H 1.09002 * 109.53569 * 54.82871 * 15 14 13 33 33 H 1.08994 * 109.52531 * 303.05727 * 16 15 14 34 34 H 1.09012 * 109.52186 * 63.24241 * 16 15 14 35 35 H 1.09002 * 109.48278 * 297.63021 * 17 16 15 36 36 H 1.08996 * 109.48452 * 177.59242 * 17 16 15 37 37 H 1.08995 * 109.48149 * 301.17359 * 19 18 17 38 38 H 1.09000 * 109.48559 * 181.14333 * 19 18 17 39 39 H 1.09007 * 109.52056 * 182.48619 * 20 19 18 40 40 H 1.08997 * 109.52542 * 62.29640 * 20 19 18 41 41 H 1.08998 * 117.49625 * 359.97438 * 21 9 7 42 42 H 1.08998 * 117.49958 * 145.01931 * 21 9 7 43 43 H 1.09002 * 117.49568 * 214.97797 * 22 9 7 44 44 H 1.08998 * 117.49593 * 359.97438 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0816 -1.1958 -0.0796 9 6 1.2546 -2.4970 0.1066 10 6 0.8308 -2.9011 1.5202 11 16 2.3062 -3.2232 2.5251 12 6 1.6104 -3.6806 4.1366 13 6 2.7467 -3.9888 5.1139 14 6 2.1598 -4.3740 6.4733 15 6 3.2961 -4.6827 7.4503 16 6 4.0524 -5.9287 6.9794 17 6 5.1364 -6.2756 8.0034 18 8 4.5334 -6.4785 9.2830 19 6 3.8519 -5.3316 9.7954 20 6 2.7165 -4.9469 8.8434 21 6 1.6420 -3.6159 -0.8623 22 6 0.3190 -2.8694 -1.0452 23 1 -0.4850 0.8368 -0.0734 24 1 0.2532 -2.0941 1.9710 25 1 0.2198 -3.8025 1.4724 26 1 1.0131 -2.8545 4.5222 27 1 0.9801 -4.5627 4.0231 28 1 3.3437 -4.8151 4.7280 29 1 3.3773 -3.1070 5.2275 30 1 1.5632 -3.5474 6.8589 31 1 1.5290 -5.2556 6.3600 32 1 3.9794 -3.8346 7.4945 33 1 3.3577 -6.7635 6.8875 34 1 4.5150 -5.7303 6.0125 35 1 5.8534 -5.4569 8.0652 36 1 5.6498 -7.1862 7.6950 37 1 4.5521 -4.5006 9.8806 38 1 3.4401 -5.5621 10.7779 39 1 2.2235 -4.0462 9.2095 40 1 1.9947 -5.7618 8.7891 41 1 2.4389 -3.4096 -1.5767 42 1 1.5949 -4.6403 -0.4928 43 1 -0.5984 -3.4027 -0.7960 44 1 0.2455 -2.1719 -1.8795 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596358728.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:14 Heat of formation + Delta-G solvation = -58.540565 kcal Electronic energy + Delta-G solvation = -19857.074575 eV Core-core repulsion = 16900.017497 eV Total energy + Delta-G solvation = -2957.057078 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 284.155 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.70122 -36.54420 -36.15549 -32.65212 -31.92594 -31.32812 -27.88734 -27.40854 -25.30770 -24.00142 -23.43463 -21.18452 -21.08336 -20.22382 -19.13377 -16.48595 -16.27008 -16.14852 -15.64192 -15.14645 -14.92619 -14.61078 -14.48704 -14.16553 -13.78050 -13.37598 -13.16574 -12.97441 -12.75031 -12.28280 -11.90671 -11.81937 -11.71655 -11.54822 -11.30624 -10.96513 -10.95357 -10.87667 -10.75766 -10.48756 -10.44978 -10.37467 -10.12764 -9.72252 -9.52764 -9.20370 -8.88735 -8.43404 -7.97755 -6.77576 -6.01657 -4.07502 2.44324 3.30789 3.37735 3.43623 3.56123 3.62769 4.41959 4.42975 4.47168 4.60424 4.75880 4.93818 5.04330 5.10818 5.20887 5.21506 5.26926 5.36806 5.40772 5.44089 5.46674 5.55811 5.66980 5.75399 5.77078 5.82344 5.90685 5.96466 5.99338 6.10004 6.22452 6.27099 6.34327 6.41754 6.55399 6.75491 6.83624 6.93441 7.09082 7.40611 7.52771 7.90612 8.42180 8.93326 9.57859 11.06470 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.024788 B = 0.002968 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.301320 B = 9431.332096 C = 9931.040482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.071 3.929 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.271 1.271 7 C -0.484 4.484 8 H 0.061 0.939 9 C 0.055 3.945 10 C -0.024 4.024 11 S -0.253 6.253 12 C -0.099 4.099 13 C -0.100 4.100 14 C -0.109 4.109 15 C -0.089 4.089 16 C -0.153 4.153 17 C 0.059 3.941 18 O -0.386 6.386 19 C 0.060 3.940 20 C -0.152 4.152 21 C -0.205 4.205 22 C -0.149 4.149 23 H 0.259 0.741 24 H 0.080 0.920 25 H 0.046 0.954 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.049 0.951 36 H 0.092 0.908 37 H 0.049 0.951 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.677 -10.160 16.078 19.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.132 4.132 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.195 1.195 7 C -0.521 4.521 8 H 0.080 0.920 9 C 0.054 3.946 10 C -0.172 4.172 11 S -0.025 6.025 12 C -0.248 4.248 13 C -0.138 4.138 14 C -0.148 4.148 15 C -0.108 4.108 16 C -0.191 4.191 17 C -0.017 4.017 18 O -0.305 6.305 19 C -0.017 4.017 20 C -0.189 4.189 21 C -0.242 4.242 22 C -0.189 4.189 23 H 0.069 0.931 24 H 0.098 0.902 25 H 0.065 0.935 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.068 0.932 36 H 0.110 0.890 37 H 0.067 0.933 38 H 0.109 0.891 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.590 -10.130 15.970 19.721 hybrid contribution -1.143 1.203 0.062 1.661 sum 4.447 -8.927 16.032 18.881 Atomic orbital electron populations 1.69986 1.05881 1.26663 1.49554 1.24957 0.94798 0.98898 0.94521 0.86623 0.80205 0.83419 0.78065 1.20773 1.21248 1.19537 1.20383 0.92779 0.88389 1.50583 0.92042 1.18437 0.98473 0.93211 0.84521 1.23030 0.94137 1.00962 0.99057 1.86842 1.18827 1.89532 1.07253 1.23331 1.01015 1.03102 0.97344 1.21321 0.97076 1.02206 0.93187 1.21632 0.97305 1.01481 0.94353 1.21211 0.97455 0.97820 0.94310 1.22308 0.98840 0.98399 0.99534 1.22609 0.94376 1.01632 0.83108 1.87919 1.71471 1.36574 1.34554 1.22574 0.93488 0.88624 0.96972 1.22257 0.98771 1.02302 0.95603 1.22976 0.99421 0.95881 1.05942 1.22585 0.91295 1.01911 1.03077 0.93101 0.90155 0.93539 0.90956 0.91368 0.91138 0.91178 0.91747 0.91875 0.90934 0.91012 0.90261 0.93230 0.88954 0.93280 0.89087 0.90863 0.91029 0.90353 0.91476 0.92037 0.89689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.86 12.85 55.43 0.71 -24.15 16 2 C 0.07 1.94 5.44 -17.82 -0.10 1.85 16 3 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.48 -13.23 8.47 -34.44 -0.29 -13.52 16 8 H 0.06 1.72 7.82 -52.49 -0.41 1.31 16 9 C 0.06 1.36 1.34 -155.66 -0.21 1.15 16 10 C -0.02 -0.53 5.80 37.16 0.22 -0.32 16 11 S -0.25 -5.11 21.43 -107.50 -2.30 -7.42 16 12 C -0.10 -1.52 5.94 37.16 0.22 -1.30 16 13 C -0.10 -1.24 4.99 -26.73 -0.13 -1.37 16 14 C -0.11 -1.09 4.69 -26.73 -0.13 -1.21 16 15 C -0.09 -0.80 2.27 -90.44 -0.21 -1.01 16 16 C -0.15 -1.36 5.10 -26.59 -0.14 -1.50 16 17 C 0.06 0.51 6.84 37.21 0.25 0.77 16 18 O -0.39 -3.96 10.77 -35.23 -0.38 -4.34 16 19 C 0.06 0.49 6.84 37.20 0.25 0.74 16 20 C -0.15 -1.23 5.42 -26.60 -0.14 -1.37 16 21 C -0.20 -4.54 9.96 -26.73 -0.27 -4.81 16 22 C -0.15 -3.49 9.39 -26.73 -0.25 -3.74 16 23 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 24 H 0.08 1.97 8.14 -51.92 -0.42 1.55 16 25 H 0.05 0.96 8.09 -51.92 -0.42 0.54 16 26 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 27 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 28 H 0.07 0.87 6.66 -51.93 -0.35 0.52 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.70 6.75 -51.92 -0.35 0.35 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 42 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 44 H 0.08 2.12 8.14 -51.93 -0.42 1.70 16 LS Contribution 362.60 15.07 5.46 5.46 Total: -1.00 -28.73 362.60 -10.71 -39.44 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -8.27 Total: 0.35 kcal Atomic # 6 Polarization: -24.72 SS G_CDS: -0.91 Total: -25.63 kcal Atomic # 7 Polarization: -24.86 SS G_CDS: 0.71 Total: -24.15 kcal Atomic # 8 Polarization: -3.96 SS G_CDS: -0.38 Total: -4.34 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -5.11 SS G_CDS: -2.30 Total: -7.42 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.73 -10.71 -39.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596358728.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.101 kcal (2) G-P(sol) polarization free energy of solvation -28.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds