Wall clock time and date at job start Tue Mar 31 2020 06:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00255 * 2 1 4 4 H 1.48503 * 109.47416 * 269.99835 * 3 2 1 5 5 H 1.48507 * 109.47343 * 29.99745 * 3 2 1 6 6 H 1.48499 * 109.47569 * 149.99417 * 3 2 1 7 7 C 1.37884 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00027 * 175.08269 * 7 2 1 9 9 C 1.50700 * 119.99493 * 355.36229 * 7 2 1 10 10 C 1.53002 * 115.54672 * 279.20521 * 9 7 2 11 11 S 1.81398 * 109.47466 * 294.73931 * 10 9 7 12 12 C 1.81399 * 102.99832 * 180.02562 * 11 10 9 13 13 C 1.53011 * 109.46887 * 179.97438 * 12 11 10 14 14 C 1.52995 * 109.46959 * 179.97438 * 13 12 11 15 15 C 1.53003 * 109.47125 * 179.97438 * 14 13 12 16 16 C 1.53174 * 109.54590 * 294.56025 * 15 14 13 17 17 C 1.53092 * 109.16588 * 183.14633 * 16 15 14 18 18 O 1.42905 * 109.41235 * 57.61012 * 17 16 15 19 19 C 1.42910 * 114.09570 * 298.84414 * 18 17 16 20 20 C 1.53088 * 109.41484 * 61.15870 * 19 18 17 21 21 C 1.53001 * 117.49832 * 133.50573 * 9 7 2 22 22 C 1.53003 * 117.50133 * 64.88144 * 9 7 2 23 23 H 0.97000 * 119.99877 * 5.01063 * 1 2 3 24 24 H 1.08999 * 109.47450 * 54.74449 * 10 9 7 25 25 H 1.09006 * 109.46501 * 174.74066 * 10 9 7 26 26 H 1.08992 * 109.47589 * 300.00054 * 12 11 10 27 27 H 1.09002 * 109.47101 * 60.00282 * 12 11 10 28 28 H 1.09002 * 109.46988 * 300.00542 * 13 12 11 29 29 H 1.09002 * 109.46909 * 60.00300 * 13 12 11 30 30 H 1.08992 * 109.47757 * 300.00337 * 14 13 12 31 31 H 1.09002 * 109.46862 * 60.00520 * 14 13 12 32 32 H 1.09002 * 109.53569 * 54.82871 * 15 14 13 33 33 H 1.08994 * 109.52531 * 303.05727 * 16 15 14 34 34 H 1.09012 * 109.52186 * 63.24241 * 16 15 14 35 35 H 1.09002 * 109.48278 * 297.63021 * 17 16 15 36 36 H 1.08996 * 109.48452 * 177.59242 * 17 16 15 37 37 H 1.08995 * 109.48149 * 301.17359 * 19 18 17 38 38 H 1.09000 * 109.48559 * 181.14333 * 19 18 17 39 39 H 1.09007 * 109.52056 * 182.48619 * 20 19 18 40 40 H 1.08997 * 109.52542 * 62.29640 * 20 19 18 41 41 H 1.08998 * 117.49625 * 359.97438 * 21 9 7 42 42 H 1.08998 * 117.49958 * 145.01931 * 21 9 7 43 43 H 1.09002 * 117.49568 * 214.97797 * 22 9 7 44 44 H 1.08998 * 117.49593 * 359.97438 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0816 -1.1958 -0.0796 9 6 1.2546 -2.4970 0.1066 10 6 0.8308 -2.9011 1.5202 11 16 2.3062 -3.2232 2.5251 12 6 1.6104 -3.6806 4.1366 13 6 2.7467 -3.9888 5.1139 14 6 2.1598 -4.3740 6.4733 15 6 3.2961 -4.6827 7.4503 16 6 4.0524 -5.9287 6.9794 17 6 5.1364 -6.2756 8.0034 18 8 4.5334 -6.4785 9.2830 19 6 3.8519 -5.3316 9.7954 20 6 2.7165 -4.9469 8.8434 21 6 1.6420 -3.6159 -0.8623 22 6 0.3190 -2.8694 -1.0452 23 1 -0.4850 0.8368 -0.0734 24 1 0.2532 -2.0941 1.9710 25 1 0.2198 -3.8025 1.4724 26 1 1.0131 -2.8545 4.5222 27 1 0.9801 -4.5627 4.0231 28 1 3.3437 -4.8151 4.7280 29 1 3.3773 -3.1070 5.2275 30 1 1.5632 -3.5474 6.8589 31 1 1.5290 -5.2556 6.3600 32 1 3.9794 -3.8346 7.4945 33 1 3.3577 -6.7635 6.8875 34 1 4.5150 -5.7303 6.0125 35 1 5.8534 -5.4569 8.0652 36 1 5.6498 -7.1862 7.6950 37 1 4.5521 -4.5006 9.8806 38 1 3.4401 -5.5621 10.7779 39 1 2.2235 -4.0462 9.2095 40 1 1.9947 -5.7618 8.7891 41 1 2.4389 -3.4096 -1.5767 42 1 1.5949 -4.6403 -0.4928 43 1 -0.5984 -3.4027 -0.7960 44 1 0.2455 -2.1719 -1.8795 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596358728.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:14 Heat of formation + Delta-G solvation = -71.399220 kcal Electronic energy + Delta-G solvation = -19857.632168 eV Core-core repulsion = 16900.017497 eV Total energy + Delta-G solvation = -2957.614671 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 284.155 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.38868 -38.41567 -36.99773 -34.00497 -33.57279 -31.97511 -29.50952 -28.50034 -27.35259 -24.75887 -24.22411 -22.92102 -22.13292 -21.03515 -20.91894 -18.16773 -17.17624 -16.95436 -16.72590 -16.64896 -16.43109 -15.69303 -15.61645 -15.41869 -15.07558 -14.91697 -14.42841 -14.09255 -13.91623 -13.59310 -13.27190 -13.04671 -12.91731 -12.81600 -12.64809 -12.55177 -12.30753 -12.20802 -12.00280 -11.86133 -11.65736 -11.41225 -11.19988 -11.13265 -10.94304 -10.70275 -10.45110 -10.37286 -9.83848 -8.39355 -8.09997 -6.20903 0.94518 1.39492 1.42158 1.52272 1.99003 2.43131 3.00267 3.17894 3.53814 3.65606 3.75990 3.89039 4.02221 4.11657 4.17856 4.21306 4.31875 4.40121 4.44079 4.50430 4.55474 4.60351 4.67222 4.68825 4.70472 4.79999 4.84350 4.93330 4.94708 4.99324 4.99795 5.03200 5.13287 5.21255 5.22977 5.25328 5.38422 5.50635 5.56263 5.63622 5.78708 6.29301 6.39118 6.82502 7.46521 8.97341 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.024788 B = 0.002968 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.301320 B = 9431.332096 C = 9931.040482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.028 3.972 3 Si 0.944 3.056 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.497 4.497 8 H 0.046 0.954 9 C 0.028 3.972 10 C -0.014 4.014 11 S -0.287 6.287 12 C -0.084 4.084 13 C -0.092 4.092 14 C -0.100 4.100 15 C -0.088 4.088 16 C -0.151 4.151 17 C 0.057 3.943 18 O -0.406 6.406 19 C 0.056 3.944 20 C -0.148 4.148 21 C -0.183 4.183 22 C -0.151 4.151 23 H 0.260 0.740 24 H 0.051 0.949 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.055 0.945 36 H 0.100 0.900 37 H 0.055 0.945 38 H 0.104 0.896 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.043 -10.812 17.370 21.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.172 4.172 3 Si 0.770 3.230 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.535 4.535 8 H 0.065 0.935 9 C 0.027 3.973 10 C -0.162 4.162 11 S -0.059 6.059 12 C -0.232 4.232 13 C -0.131 4.131 14 C -0.139 4.139 15 C -0.106 4.106 16 C -0.189 4.189 17 C -0.020 4.020 18 O -0.326 6.326 19 C -0.021 4.021 20 C -0.185 4.185 21 C -0.220 4.220 22 C -0.191 4.191 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.100 0.900 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.119 0.881 37 H 0.073 0.927 38 H 0.122 0.878 39 H 0.102 0.898 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.109 0.891 43 H 0.094 0.906 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.960 -10.783 17.248 21.197 hybrid contribution -1.233 1.364 -0.293 1.862 sum 4.727 -9.419 16.955 19.963 Atomic orbital electron populations 1.70073 1.06867 1.27243 1.50408 1.25581 0.95548 1.01631 0.94419 0.85757 0.78978 0.80043 0.78179 1.20182 1.20856 1.19561 1.20570 0.92313 0.90115 1.50476 0.93531 1.18548 0.99396 0.93361 0.86028 1.22740 0.94840 1.00462 0.98179 1.86837 1.18786 1.89743 1.10495 1.23426 1.01952 1.03448 0.94374 1.21295 0.96064 1.02003 0.93728 1.21556 0.97647 1.01761 0.92939 1.21187 0.97048 0.97813 0.94591 1.22280 0.98852 0.98182 0.99568 1.22692 0.94351 1.02323 0.82595 1.87894 1.71814 1.37719 1.35141 1.22719 0.93537 0.88344 0.97481 1.22223 0.98690 1.02662 0.94968 1.22960 0.98269 0.96340 1.04424 1.22503 0.92524 1.02039 1.02060 0.93133 0.93055 0.91942 0.91100 0.89966 0.90867 0.91917 0.91391 0.91368 0.91012 0.91426 0.90378 0.92716 0.88140 0.92679 0.87843 0.89791 0.91366 0.90577 0.89122 0.90576 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.61 12.85 21.45 0.28 -51.33 16 2 C 0.03 1.56 5.44 84.66 0.46 2.02 16 3 Si 0.94 43.98 29.54 68.60 2.03 46.01 16 4 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 7 C -0.50 -27.46 8.47 25.60 0.22 -27.24 16 8 H 0.05 2.64 7.82 -2.91 -0.02 2.62 16 9 C 0.03 1.38 1.34 -52.93 -0.07 1.31 16 10 C -0.01 -0.62 5.80 71.98 0.42 -0.20 16 11 S -0.29 -11.40 21.43 -56.49 -1.21 -12.61 16 12 C -0.08 -2.42 5.94 71.99 0.43 -1.99 16 13 C -0.09 -2.13 4.99 30.60 0.15 -1.98 16 14 C -0.10 -1.78 4.69 30.59 0.14 -1.63 16 15 C -0.09 -1.40 2.27 -10.68 -0.02 -1.42 16 16 C -0.15 -2.43 5.10 30.68 0.16 -2.27 16 17 C 0.06 0.89 6.84 72.01 0.49 1.39 16 18 O -0.41 -7.70 10.77 -148.98 -1.60 -9.30 16 19 C 0.06 0.80 6.84 72.01 0.49 1.29 16 20 C -0.15 -2.08 5.42 30.68 0.17 -1.91 16 21 C -0.18 -7.91 9.96 30.60 0.30 -7.61 16 22 C -0.15 -7.08 9.39 30.60 0.29 -6.79 16 23 H 0.26 14.13 8.32 -92.71 -0.77 13.36 16 24 H 0.05 2.55 8.14 -2.39 -0.02 2.53 16 25 H 0.06 2.53 8.09 -2.39 -0.02 2.51 16 26 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.07 1.67 6.66 -2.39 -0.02 1.65 16 29 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.08 1.26 6.75 -2.38 -0.02 1.25 16 35 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 40 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 42 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 43 H 0.08 3.27 8.14 -2.39 -0.02 3.26 16 44 H 0.06 3.18 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -60.74 362.60 4.04 -56.70 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 0.93 Total: 17.57 kcal Atomic # 6 Polarization: -50.66 SS G_CDS: 3.62 Total: -47.04 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: 0.28 Total: -51.33 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -1.60 Total: -9.30 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: -11.40 SS G_CDS: -1.21 Total: -12.61 kcal Total: -60.74 4.04 -56.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596358728.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.697 kcal (2) G-P(sol) polarization free energy of solvation -60.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds