Wall clock time and date at job start Tue Mar 31 2020 06:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99914 * 2 1 4 4 H 1.48504 * 109.46994 * 270.00096 * 3 2 1 5 5 H 1.48497 * 109.47362 * 29.99960 * 3 2 1 6 6 H 1.48497 * 109.47035 * 149.99993 * 3 2 1 7 7 C 1.37879 * 119.99960 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99729 * 173.68839 * 7 2 1 9 9 C 1.50696 * 119.99736 * 353.68441 * 7 2 1 10 10 C 1.53007 * 115.54876 * 85.65759 * 9 7 2 11 11 S 1.81403 * 109.47210 * 65.32520 * 10 9 7 12 12 C 1.81392 * 102.99822 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.46956 * 179.97438 * 12 11 10 14 14 O 1.42904 * 109.47085 * 180.02562 * 13 12 11 15 15 C 1.42896 * 113.99927 * 180.02562 * 14 13 12 16 16 C 1.53001 * 109.47221 * 179.97438 * 15 14 13 17 17 C 1.54269 * 110.03252 * 292.90402 * 16 15 14 18 18 C 1.54954 * 104.16048 * 217.13490 * 17 16 15 19 19 C 1.54891 * 102.78109 * 37.88831 * 18 17 16 20 20 C 1.53874 * 110.03300 * 175.68767 * 16 15 14 21 21 C 1.52997 * 117.49990 * 231.31902 * 9 7 2 22 22 C 1.52993 * 117.50448 * 299.98116 * 9 7 2 23 23 H 0.97006 * 120.00223 * 355.02461 * 1 2 3 24 24 H 1.09001 * 109.46556 * 305.32976 * 10 9 7 25 25 H 1.09000 * 109.47102 * 185.32420 * 10 9 7 26 26 H 1.09007 * 109.47019 * 60.00610 * 12 11 10 27 27 H 1.08999 * 109.47708 * 299.99883 * 12 11 10 28 28 H 1.08996 * 109.47366 * 60.00406 * 13 12 11 29 29 H 1.08998 * 109.47294 * 300.00111 * 13 12 11 30 30 H 1.09006 * 109.47377 * 299.99984 * 15 14 13 31 31 H 1.09001 * 109.47733 * 59.99868 * 15 14 13 32 32 H 1.08997 * 110.01869 * 54.29622 * 16 15 14 33 33 H 1.09004 * 110.48283 * 335.78792 * 17 16 15 34 34 H 1.09005 * 110.48490 * 98.42204 * 17 16 15 35 35 H 1.08998 * 110.72628 * 279.57368 * 18 17 16 36 36 H 1.09003 * 110.92237 * 156.29621 * 18 17 16 37 37 H 1.09000 * 110.49071 * 203.40254 * 19 18 17 38 38 H 1.09005 * 110.59687 * 80.81301 * 19 18 17 39 39 H 1.08997 * 110.03475 * 238.56997 * 20 16 15 40 40 H 1.09001 * 110.03448 * 359.95343 * 20 16 15 41 41 H 1.09000 * 117.50504 * 215.00746 * 21 9 7 42 42 H 1.09004 * 117.49754 * 0.03361 * 21 9 7 43 43 H 1.09000 * 117.49799 * 359.97438 * 22 9 7 44 44 H 1.09003 * 117.50126 * 144.97102 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0795 -1.1968 -0.1034 9 6 1.2578 -2.4952 0.1425 10 6 0.7095 -3.0876 -1.1573 11 16 2.0893 -3.5543 -2.2386 12 6 1.2524 -4.2250 -3.7015 13 6 2.2969 -4.6707 -4.7269 14 8 1.6376 -5.1986 -5.8797 15 6 2.5276 -5.6467 -6.9039 16 6 1.7168 -6.1891 -8.0826 17 6 0.9763 -7.4769 -7.6666 18 6 1.0415 -8.3758 -8.9271 19 6 2.4582 -8.0855 -9.4820 20 6 2.6584 -6.5756 -9.2367 21 6 1.7410 -3.4727 1.2156 22 6 0.4342 -2.7010 1.4153 23 1 -0.4851 0.8369 0.0729 24 1 0.0881 -2.3468 -1.6605 25 1 0.1112 -3.9701 -0.9304 26 1 0.6172 -3.4560 -4.1412 27 1 0.6408 -5.0791 -3.4107 28 1 2.9325 -5.4395 -4.2876 29 1 2.9081 -3.8164 -5.0178 30 1 3.1443 -4.8130 -7.2397 31 1 3.1674 -6.4362 -6.5097 32 1 1.0012 -5.4393 -8.4198 33 1 1.4847 -7.9559 -6.8298 34 1 -0.0593 -7.2550 -7.4084 35 1 0.2773 -8.0854 -9.6480 36 1 0.9392 -9.4278 -8.6607 37 1 2.5034 -8.3081 -10.5481 38 1 3.2078 -8.6626 -8.9406 39 1 2.3993 -6.0140 -10.1341 40 1 3.6930 -6.3760 -8.9573 41 1 1.6682 -4.5379 0.9958 42 1 2.5986 -3.1745 1.8187 43 1 0.4328 -1.8954 2.1495 44 1 -0.4985 -3.2580 1.3267 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596368531.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:23 Heat of formation + Delta-G solvation = -52.725787 kcal Electronic energy + Delta-G solvation = -19568.854677 eV Core-core repulsion = 16612.049747 eV Total energy + Delta-G solvation = -2956.804930 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 284.155 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.01740 -37.23168 -36.55984 -31.92564 -31.76845 -29.73660 -28.90196 -27.65894 -25.33192 -24.52231 -22.78918 -21.10921 -20.93864 -19.86656 -19.15210 -17.05245 -16.22754 -16.20991 -15.68414 -15.45508 -14.88126 -14.61761 -14.32294 -13.91511 -13.68715 -13.53635 -13.22737 -12.88904 -12.41356 -12.05245 -11.71976 -11.58823 -11.41577 -11.37431 -11.27587 -11.12878 -10.97757 -10.92577 -10.88657 -10.78126 -10.62601 -10.45619 -10.17540 -9.65095 -9.58720 -9.30991 -8.81137 -8.42834 -8.01916 -6.82894 -6.03637 -4.08823 2.21430 3.31654 3.38479 3.42528 3.48517 3.78120 4.35004 4.36726 4.43208 4.55596 4.97666 5.05834 5.12344 5.17375 5.24118 5.25469 5.28884 5.35498 5.38918 5.41397 5.49353 5.54285 5.56556 5.62977 5.76365 5.82577 5.91876 5.97813 6.01213 6.03520 6.05381 6.18432 6.21983 6.40606 6.53521 6.74243 6.81697 7.07055 7.18616 7.40589 7.49175 7.89705 8.40601 8.93061 9.57330 11.05585 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.027755 B = 0.002721 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.581979 B =10287.342253 C =10829.787058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.071 3.929 3 Si 0.889 3.111 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.484 4.484 8 H 0.062 0.938 9 C 0.054 3.946 10 C -0.022 4.022 11 S -0.240 6.240 12 C -0.102 4.102 13 C 0.085 3.915 14 O -0.387 6.387 15 C 0.070 3.930 16 C -0.092 4.092 17 C -0.114 4.114 18 C -0.128 4.128 19 C -0.125 4.125 20 C -0.119 4.119 21 C -0.204 4.204 22 C -0.148 4.148 23 H 0.260 0.740 24 H 0.084 0.916 25 H 0.048 0.952 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.663 -13.962 -15.624 21.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.132 4.132 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.522 4.522 8 H 0.080 0.920 9 C 0.053 3.947 10 C -0.170 4.170 11 S -0.012 6.012 12 C -0.251 4.251 13 C 0.007 3.993 14 O -0.307 6.307 15 C -0.007 4.007 16 C -0.111 4.111 17 C -0.151 4.151 18 C -0.165 4.165 19 C -0.162 4.162 20 C -0.156 4.156 21 C -0.242 4.242 22 C -0.188 4.188 23 H 0.069 0.931 24 H 0.103 0.897 25 H 0.067 0.933 26 H 0.100 0.900 27 H 0.096 0.904 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.387 -13.741 -15.558 21.032 hybrid contribution -0.750 0.919 -0.124 1.193 sum 2.637 -12.822 -15.682 20.427 Atomic orbital electron populations 1.70010 1.05877 1.26816 1.49192 1.24951 0.94784 0.98911 0.94515 0.86650 0.80006 0.83475 0.78231 1.20540 1.21288 1.19835 1.20383 0.92940 0.88458 1.50417 0.91958 1.18448 0.98195 0.93938 0.84161 1.23103 0.95045 1.00470 0.98412 1.86730 1.18515 1.80356 1.15625 1.23192 1.01081 1.03427 0.97361 1.22078 0.94127 0.97781 0.85269 1.87862 1.33888 1.81662 1.27279 1.22627 0.92231 0.97655 0.88205 1.21773 0.97512 0.98047 0.93719 1.22376 1.00794 0.94597 0.97371 1.22544 0.96871 0.99587 0.97531 1.22360 0.97326 0.95868 1.00687 1.22138 0.99454 0.96332 0.97720 1.23022 0.98401 0.95815 1.06963 1.22578 0.92236 1.01198 1.02771 0.93062 0.89719 0.93318 0.89961 0.90396 0.92698 0.92458 0.93436 0.93360 0.90203 0.91462 0.91366 0.91600 0.91670 0.91775 0.91648 0.91458 0.91592 0.91401 0.90253 0.89755 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.76 12.90 55.43 0.71 -24.05 16 2 C 0.07 1.94 5.39 -17.82 -0.10 1.85 16 3 Si 0.89 21.25 29.55 -169.99 -5.02 16.22 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.48 -13.16 8.49 -34.44 -0.29 -13.45 16 8 H 0.06 1.73 7.82 -52.49 -0.41 1.32 16 9 C 0.05 1.33 1.34 -155.66 -0.21 1.12 16 10 C -0.02 -0.50 5.80 37.16 0.22 -0.28 16 11 S -0.24 -4.85 21.43 -107.50 -2.30 -7.16 16 12 C -0.10 -1.69 6.31 37.16 0.23 -1.45 16 13 C 0.08 1.22 5.95 37.16 0.22 1.44 16 14 O -0.39 -5.35 10.18 -35.23 -0.36 -5.71 16 15 C 0.07 0.75 4.98 37.16 0.19 0.94 16 16 C -0.09 -0.86 3.19 -89.50 -0.29 -1.15 16 17 C -0.11 -1.04 6.22 -25.04 -0.16 -1.20 16 18 C -0.13 -0.95 6.91 -24.70 -0.17 -1.12 16 19 C -0.12 -0.86 6.83 -25.07 -0.17 -1.03 16 20 C -0.12 -0.89 6.46 -25.61 -0.17 -1.06 16 21 C -0.20 -4.48 9.96 -26.70 -0.27 -4.75 16 22 C -0.15 -3.43 9.40 -26.70 -0.25 -3.68 16 23 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 24 H 0.08 2.08 8.14 -51.92 -0.42 1.66 16 25 H 0.05 1.00 8.09 -51.92 -0.42 0.58 16 26 H 0.08 1.39 8.14 -51.92 -0.42 0.97 16 27 H 0.08 1.23 8.14 -51.92 -0.42 0.81 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.48 8.02 -51.93 -0.42 0.07 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.65 7.77 -51.93 -0.40 0.24 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.47 7.67 -51.93 -0.40 0.07 16 41 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 43 H 0.08 2.07 8.14 -51.93 -0.42 1.65 16 44 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 368.69 15.07 5.56 5.56 Total: -1.00 -28.02 368.69 -10.99 -39.01 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -8.37 Total: -0.05 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: -1.21 Total: -23.83 kcal Atomic # 7 Polarization: -24.76 SS G_CDS: 0.71 Total: -24.05 kcal Atomic # 8 Polarization: -5.35 SS G_CDS: -0.36 Total: -5.71 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -4.85 SS G_CDS: -2.30 Total: -7.16 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.02 -10.99 -39.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596368531.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.713 kcal (2) G-P(sol) polarization free energy of solvation -28.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds