Wall clock time and date at job start Tue Mar 31 2020 06:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99914 * 2 1 4 4 H 1.48504 * 109.46994 * 270.00096 * 3 2 1 5 5 H 1.48497 * 109.47362 * 29.99960 * 3 2 1 6 6 H 1.48497 * 109.47035 * 149.99993 * 3 2 1 7 7 C 1.37879 * 119.99960 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99729 * 173.68839 * 7 2 1 9 9 C 1.50696 * 119.99736 * 353.68441 * 7 2 1 10 10 C 1.53007 * 115.54876 * 85.65759 * 9 7 2 11 11 S 1.81403 * 109.47210 * 65.32520 * 10 9 7 12 12 C 1.81392 * 102.99822 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.46956 * 179.97438 * 12 11 10 14 14 O 1.42904 * 109.47085 * 180.02562 * 13 12 11 15 15 C 1.42896 * 113.99927 * 180.02562 * 14 13 12 16 16 C 1.53001 * 109.47221 * 179.97438 * 15 14 13 17 17 C 1.54269 * 110.03252 * 292.90402 * 16 15 14 18 18 C 1.54954 * 104.16048 * 217.13490 * 17 16 15 19 19 C 1.54891 * 102.78109 * 37.88831 * 18 17 16 20 20 C 1.53874 * 110.03300 * 175.68767 * 16 15 14 21 21 C 1.52997 * 117.49990 * 231.31902 * 9 7 2 22 22 C 1.52993 * 117.50448 * 299.98116 * 9 7 2 23 23 H 0.97006 * 120.00223 * 355.02461 * 1 2 3 24 24 H 1.09001 * 109.46556 * 305.32976 * 10 9 7 25 25 H 1.09000 * 109.47102 * 185.32420 * 10 9 7 26 26 H 1.09007 * 109.47019 * 60.00610 * 12 11 10 27 27 H 1.08999 * 109.47708 * 299.99883 * 12 11 10 28 28 H 1.08996 * 109.47366 * 60.00406 * 13 12 11 29 29 H 1.08998 * 109.47294 * 300.00111 * 13 12 11 30 30 H 1.09006 * 109.47377 * 299.99984 * 15 14 13 31 31 H 1.09001 * 109.47733 * 59.99868 * 15 14 13 32 32 H 1.08997 * 110.01869 * 54.29622 * 16 15 14 33 33 H 1.09004 * 110.48283 * 335.78792 * 17 16 15 34 34 H 1.09005 * 110.48490 * 98.42204 * 17 16 15 35 35 H 1.08998 * 110.72628 * 279.57368 * 18 17 16 36 36 H 1.09003 * 110.92237 * 156.29621 * 18 17 16 37 37 H 1.09000 * 110.49071 * 203.40254 * 19 18 17 38 38 H 1.09005 * 110.59687 * 80.81301 * 19 18 17 39 39 H 1.08997 * 110.03475 * 238.56997 * 20 16 15 40 40 H 1.09001 * 110.03448 * 359.95343 * 20 16 15 41 41 H 1.09000 * 117.50504 * 215.00746 * 21 9 7 42 42 H 1.09004 * 117.49754 * 0.03361 * 21 9 7 43 43 H 1.09000 * 117.49799 * 359.97438 * 22 9 7 44 44 H 1.09003 * 117.50126 * 144.97102 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0795 -1.1968 -0.1034 9 6 1.2578 -2.4952 0.1425 10 6 0.7095 -3.0876 -1.1573 11 16 2.0893 -3.5543 -2.2386 12 6 1.2524 -4.2250 -3.7015 13 6 2.2969 -4.6707 -4.7269 14 8 1.6376 -5.1986 -5.8797 15 6 2.5276 -5.6467 -6.9039 16 6 1.7168 -6.1891 -8.0826 17 6 0.9763 -7.4769 -7.6666 18 6 1.0415 -8.3758 -8.9271 19 6 2.4582 -8.0855 -9.4820 20 6 2.6584 -6.5756 -9.2367 21 6 1.7410 -3.4727 1.2156 22 6 0.4342 -2.7010 1.4153 23 1 -0.4851 0.8369 0.0729 24 1 0.0881 -2.3468 -1.6605 25 1 0.1112 -3.9701 -0.9304 26 1 0.6172 -3.4560 -4.1412 27 1 0.6408 -5.0791 -3.4107 28 1 2.9325 -5.4395 -4.2876 29 1 2.9081 -3.8164 -5.0178 30 1 3.1443 -4.8130 -7.2397 31 1 3.1674 -6.4362 -6.5097 32 1 1.0012 -5.4393 -8.4198 33 1 1.4847 -7.9559 -6.8298 34 1 -0.0593 -7.2550 -7.4084 35 1 0.2773 -8.0854 -9.6480 36 1 0.9392 -9.4278 -8.6607 37 1 2.5034 -8.3081 -10.5481 38 1 3.2078 -8.6626 -8.9406 39 1 2.3993 -6.0140 -10.1341 40 1 3.6930 -6.3760 -8.9573 41 1 1.6682 -4.5379 0.9958 42 1 2.5986 -3.1745 1.8187 43 1 0.4328 -1.8954 2.1495 44 1 -0.4985 -3.2580 1.3267 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596368531.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:23 Heat of formation + Delta-G solvation = -64.434668 kcal Electronic energy + Delta-G solvation = -19569.362412 eV Core-core repulsion = 16612.049747 eV Total energy + Delta-G solvation = -2957.312665 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 284.155 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.82813 -38.42553 -38.11562 -33.99333 -32.84007 -30.61879 -29.54532 -29.43567 -27.38618 -25.32523 -24.01835 -22.92205 -21.54149 -21.09467 -20.53669 -18.19180 -17.99623 -17.26635 -16.71167 -16.56230 -16.47883 -16.09193 -15.67390 -15.28307 -14.97718 -14.76550 -14.30955 -14.19237 -13.88007 -13.53505 -13.21585 -12.95048 -12.86007 -12.72401 -12.49516 -12.34667 -12.08009 -11.99792 -11.97022 -11.89621 -11.65588 -11.52154 -11.47584 -11.32826 -10.96287 -10.71474 -10.59821 -10.45492 -9.86446 -8.45824 -8.11037 -6.21124 0.71072 1.40972 1.43155 1.52308 1.86145 2.44179 2.78514 3.17914 3.53970 3.69086 3.71888 3.80716 3.87158 4.02689 4.19217 4.31336 4.36604 4.40961 4.42110 4.50058 4.57362 4.60499 4.66461 4.67830 4.69554 4.71562 4.80252 4.85462 4.91268 4.93956 5.00798 5.06080 5.10045 5.23455 5.25371 5.35293 5.46072 5.48957 5.58389 5.63049 5.78046 6.18087 6.38771 6.83408 7.47039 8.97355 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.027755 B = 0.002721 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.581979 B =10287.342253 C =10829.787058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.028 3.972 3 Si 0.944 3.056 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.496 4.496 8 H 0.049 0.951 9 C 0.026 3.974 10 C -0.015 4.015 11 S -0.257 6.257 12 C -0.089 4.089 13 C 0.092 3.908 14 O -0.401 6.401 15 C 0.065 3.935 16 C -0.092 4.092 17 C -0.117 4.117 18 C -0.125 4.125 19 C -0.123 4.123 20 C -0.116 4.116 21 C -0.181 4.181 22 C -0.151 4.151 23 H 0.260 0.740 24 H 0.054 0.946 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.092 0.908 42 H 0.078 0.922 43 H 0.063 0.937 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.480 -15.112 -16.734 22.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.172 4.172 3 Si 0.770 3.230 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.534 4.534 8 H 0.067 0.933 9 C 0.024 3.976 10 C -0.163 4.163 11 S -0.030 6.030 12 C -0.237 4.237 13 C 0.015 3.985 14 O -0.321 6.321 15 C -0.012 4.012 16 C -0.111 4.111 17 C -0.154 4.154 18 C -0.163 4.163 19 C -0.160 4.160 20 C -0.154 4.154 21 C -0.218 4.218 22 C -0.190 4.190 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.084 0.916 26 H 0.093 0.907 27 H 0.106 0.894 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.110 0.890 42 H 0.096 0.904 43 H 0.082 0.918 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.214 -14.896 -16.664 22.745 hybrid contribution -1.000 1.226 0.164 1.590 sum 3.214 -13.671 -16.500 21.667 Atomic orbital electron populations 1.70097 1.06884 1.27368 1.50151 1.25586 0.95519 1.01666 0.94469 0.85784 0.78984 0.80138 0.78109 1.20449 1.20812 1.19488 1.20576 0.92522 0.90108 1.50168 0.93310 1.18549 0.99362 0.94156 0.85505 1.22830 0.95447 1.00174 0.97862 1.86646 1.18388 1.80619 1.17308 1.23158 1.01320 1.03259 0.95996 1.21928 0.93275 0.98134 0.85213 1.87838 1.34953 1.81779 1.27570 1.22850 0.92314 0.98180 0.87843 1.21804 0.97673 0.97788 0.93831 1.22376 0.99977 0.94963 0.98105 1.22539 0.97480 0.99581 0.96686 1.22370 0.96865 0.95310 1.01499 1.22138 0.99228 0.96926 0.97094 1.23007 0.97407 0.96587 1.04829 1.22513 0.93568 1.01187 1.01780 0.93142 0.92695 0.91614 0.90684 0.89419 0.91692 0.92525 0.92788 0.92423 0.91160 0.92038 0.92499 0.91289 0.90994 0.90543 0.91360 0.90758 0.91021 0.88994 0.90370 0.91815 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.51 12.90 21.45 0.28 -51.23 16 2 C 0.03 1.52 5.39 84.66 0.46 1.98 16 3 Si 0.94 43.82 29.55 68.60 2.03 45.85 16 4 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.50 -27.13 8.49 25.60 0.22 -26.91 16 8 H 0.05 2.73 7.82 -2.91 -0.02 2.71 16 9 C 0.03 1.26 1.34 -52.93 -0.07 1.19 16 10 C -0.01 -0.66 5.80 71.98 0.42 -0.24 16 11 S -0.26 -10.22 21.43 -56.49 -1.21 -11.43 16 12 C -0.09 -2.84 6.31 71.98 0.45 -2.39 16 13 C 0.09 2.51 5.95 71.98 0.43 2.94 16 14 O -0.40 -10.61 10.18 -148.98 -1.52 -12.13 16 15 C 0.06 1.30 4.98 71.98 0.36 1.65 16 16 C -0.09 -1.61 3.19 -10.07 -0.03 -1.65 16 17 C -0.12 -2.02 6.22 31.69 0.20 -1.82 16 18 C -0.13 -1.65 6.91 31.91 0.22 -1.43 16 19 C -0.12 -1.42 6.83 31.67 0.22 -1.21 16 20 C -0.12 -1.52 6.46 31.32 0.20 -1.31 16 21 C -0.18 -7.69 9.96 30.62 0.30 -7.39 16 22 C -0.15 -6.94 9.40 30.61 0.29 -6.65 16 23 H 0.26 14.14 8.32 -92.70 -0.77 13.37 16 24 H 0.05 2.74 8.14 -2.39 -0.02 2.72 16 25 H 0.07 2.65 8.09 -2.39 -0.02 2.63 16 26 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 27 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 28 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.06 1.05 8.02 -2.39 -0.02 1.03 16 32 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.06 1.12 7.77 -2.38 -0.02 1.10 16 34 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 39 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.07 0.86 7.67 -2.39 -0.02 0.84 16 41 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 42 H 0.08 3.32 8.14 -2.38 -0.02 3.30 16 43 H 0.06 3.16 8.14 -2.39 -0.02 3.14 16 44 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 Total: -1.00 -58.94 368.69 4.15 -54.78 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.92 Total: 17.38 kcal Atomic # 6 Polarization: -46.88 SS G_CDS: 3.66 Total: -43.23 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: 0.28 Total: -51.23 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: -1.52 Total: -12.13 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: -10.22 SS G_CDS: -1.21 Total: -11.43 kcal Total: -58.94 4.15 -54.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596368531.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.653 kcal (2) G-P(sol) polarization free energy of solvation -58.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds