Wall clock time and date at job start Tue Mar 31 2020 05:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00304 * 2 1 4 4 H 1.48496 * 109.47187 * 240.00185 * 3 2 1 5 5 H 1.48496 * 109.47157 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47000 * 120.00201 * 3 2 1 7 7 C 1.37883 * 119.99228 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99417 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00337 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47193 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.47227 * 179.97438 * 10 9 7 12 12 C 1.34776 * 120.00060 * 179.97438 * 11 10 9 13 13 O 1.21589 * 120.00186 * 0.02562 * 12 11 10 14 14 N 1.34780 * 120.00261 * 180.02562 * 12 11 10 15 15 C 1.46498 * 120.00235 * 180.02562 * 14 12 11 16 16 C 1.52994 * 109.47175 * 180.02562 * 15 14 12 17 17 H 1.09005 * 109.46999 * 304.99868 * 16 15 14 18 18 C 1.50699 * 109.47229 * 65.00148 * 16 15 14 19 19 O 1.20821 * 120.00058 * 120.00068 * 18 16 15 20 20 O 1.34234 * 119.99673 * 299.99548 * 18 16 15 21 21 C 1.52998 * 109.47346 * 185.00052 * 16 15 14 22 22 C 1.53782 * 113.61779 * 179.97438 * 21 16 15 23 23 C 1.53781 * 87.08260 * 219.93457 * 22 21 16 24 24 C 1.53786 * 87.17350 * 25.39213 * 23 22 21 25 25 H 0.97002 * 119.99539 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47516 * 59.99893 * 9 7 2 27 27 H 1.08999 * 109.46868 * 300.00039 * 9 7 2 28 28 H 1.08998 * 109.47060 * 59.99512 * 10 9 7 29 29 H 1.08999 * 109.47163 * 299.99757 * 10 9 7 30 30 H 0.97000 * 120.00250 * 0.02562 * 11 10 9 31 31 H 0.97001 * 119.99341 * 359.97438 * 14 12 11 32 32 H 1.09007 * 109.46940 * 59.99756 * 15 14 12 33 33 H 1.09004 * 109.47190 * 300.00554 * 15 14 12 34 34 H 0.96698 * 116.99766 * 179.97438 * 20 18 16 35 35 H 1.08997 * 112.84789 * 311.19983 * 21 16 15 36 36 H 1.09001 * 113.61250 * 105.38275 * 22 21 16 37 37 H 1.08997 * 113.61225 * 334.48116 * 22 21 16 38 38 H 1.09002 * 113.61445 * 139.98212 * 23 22 21 39 39 H 1.09002 * 113.61408 * 270.79943 * 23 22 21 40 40 H 1.08993 * 113.61491 * 89.15923 * 24 23 22 41 41 H 1.09000 * 113.61138 * 220.06261 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 7 1.5124 -4.9308 0.0001 12 6 2.1862 -6.0981 -0.0003 13 8 3.4021 -6.0982 -0.0007 14 7 1.5123 -7.2653 -0.0003 15 6 2.2447 -8.5341 -0.0002 16 6 1.2504 -9.6969 -0.0008 17 1 0.5659 -9.5901 0.8408 18 6 0.4681 -9.6883 -1.2888 19 8 0.5143 -10.6413 -2.0300 20 8 -0.2800 -8.6218 -1.6125 21 6 2.0110 -11.0184 0.1251 22 6 1.0983 -12.2561 0.1348 23 6 2.0240 -12.8329 1.2189 24 6 2.3878 -11.3813 1.5731 25 1 -0.4849 0.8401 0.0004 26 1 0.6238 -2.5567 -0.8902 27 1 0.6246 -2.5570 0.8897 28 1 2.8717 -3.6045 0.8894 29 1 2.8716 -3.6045 -0.8905 30 1 0.5424 -4.9308 0.0000 31 1 0.5423 -7.2651 0.0004 32 1 2.8713 -8.5917 0.8899 33 1 2.8715 -8.5919 -0.8901 34 1 -0.7636 -8.6624 -2.4489 35 1 2.8442 -11.0954 -0.5735 36 1 1.1156 -12.8186 -0.7987 37 1 0.0878 -12.0505 0.4878 38 1 1.4925 -13.3562 2.0137 39 1 2.8596 -13.4074 0.8191 40 1 1.7304 -10.9362 2.3199 41 1 3.4445 -11.2387 1.7991 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596654727.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:28 Heat of formation + Delta-G solvation = -121.459636 kcal Electronic energy + Delta-G solvation = -22128.790876 eV Core-core repulsion = 18622.712208 eV Total energy + Delta-G solvation = -3506.078668 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.04997 -39.42948 -38.88581 -36.33052 -35.45485 -34.53639 -32.84411 -31.54556 -29.33765 -26.15492 -25.53825 -24.62667 -24.05336 -21.17130 -20.89596 -20.56905 -19.74860 -18.49055 -17.79697 -17.17360 -16.45036 -16.20489 -15.76211 -15.40079 -15.18107 -14.91857 -14.48937 -14.03918 -13.93796 -13.51155 -13.28062 -12.86418 -12.78714 -12.56117 -12.25769 -12.06520 -11.97838 -11.69922 -11.17526 -11.05980 -11.00385 -10.91824 -10.64212 -10.61827 -10.42982 -10.28462 -9.92296 -9.53423 -9.25743 -9.01852 -8.46326 -8.21658 -6.07702 -4.10197 1.91420 2.67919 3.01404 3.32570 3.36202 3.40004 3.62303 4.13435 4.17944 4.27938 4.41818 4.49129 4.59002 4.75418 4.77732 4.88607 5.08847 5.29356 5.37861 5.40849 5.42391 5.53581 5.60621 5.62878 5.76487 5.87212 6.12060 6.24122 6.32282 6.42516 6.58521 6.80359 7.03584 7.26841 7.58411 7.63021 7.65708 7.91714 8.28123 8.47190 8.94598 9.02896 9.54344 11.03967 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.036635 B = 0.002661 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.103896 B =10519.125682 C =10958.757162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.140 3.860 11 N -0.737 5.737 12 C 0.699 3.301 13 O -0.600 6.600 14 N -0.752 5.752 15 C 0.151 3.849 16 C -0.083 4.083 17 H 0.116 0.884 18 C 0.484 3.516 19 O -0.509 6.509 20 O -0.514 6.514 21 C -0.094 4.094 22 C -0.126 4.126 23 C -0.144 4.144 24 C -0.134 4.134 25 H 0.262 0.738 26 H 0.022 0.978 27 H 0.022 0.978 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.394 0.606 31 H 0.400 0.600 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.412 0.588 35 H 0.102 0.898 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.772 -24.546 1.248 24.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.017 3.983 11 N -0.391 5.391 12 C 0.399 3.601 13 O -0.479 6.479 14 N -0.410 5.410 15 C 0.026 3.974 16 C -0.102 4.102 17 H 0.133 0.867 18 C 0.325 3.675 19 O -0.396 6.396 20 O -0.326 6.326 21 C -0.113 4.113 22 C -0.163 4.163 23 C -0.182 4.182 24 C -0.172 4.172 25 H 0.072 0.928 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.227 0.773 31 H 0.235 0.765 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.271 0.729 35 H 0.120 0.880 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.555 -24.631 1.408 24.678 hybrid contribution -0.919 0.964 -0.640 1.478 sum -1.474 -23.667 0.768 23.726 Atomic orbital electron populations 1.69951 1.06085 1.26937 1.50427 1.24997 0.94898 0.99390 0.95029 0.86565 0.79503 0.82640 0.78784 1.20116 1.21283 1.20111 1.21023 0.93241 0.90395 1.51304 0.92276 1.19316 0.94253 0.91055 0.97797 1.21584 0.95628 0.80440 1.00616 1.45509 1.09872 1.05258 1.78440 1.16033 0.85573 0.80491 0.78009 1.90890 1.11801 1.86735 1.58512 1.45136 1.09844 1.04254 1.81807 1.20980 0.92840 0.80018 1.03538 1.21475 0.97280 0.97704 0.93757 0.86655 1.23364 0.76765 0.79364 0.87966 1.90714 1.61713 1.35547 1.51643 1.84490 1.58831 1.43797 1.45464 1.22463 0.99099 0.91033 0.98667 1.22857 0.97641 0.96315 0.99523 1.22836 0.99943 0.96356 0.99052 1.23032 1.02248 0.96515 0.95373 0.92826 0.95980 0.95975 0.92794 0.92835 0.77342 0.76464 0.89923 0.91327 0.72851 0.88023 0.90667 0.90505 0.91331 0.90060 0.89677 0.90755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.16 13.29 55.43 0.74 -25.42 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.43 29.54 -169.99 -5.02 16.40 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.01 0.33 5.09 -27.89 -0.14 0.19 16 10 C 0.14 3.03 5.61 -4.04 -0.02 3.01 16 11 N -0.74 -13.07 5.56 -65.23 -0.36 -13.44 16 12 C 0.70 12.20 8.57 -86.92 -0.74 11.46 16 13 O -0.60 -12.89 16.34 5.29 0.09 -12.80 16 14 N -0.75 -9.31 5.06 -65.22 -0.33 -9.64 16 15 C 0.15 1.59 5.05 -4.05 -0.02 1.57 16 16 C -0.08 -0.65 2.12 -91.78 -0.19 -0.85 16 17 H 0.12 0.73 7.96 -51.93 -0.41 0.31 16 18 C 0.48 4.47 7.43 36.00 0.27 4.73 16 19 O -0.51 -5.93 15.61 -18.75 -0.29 -6.23 16 20 O -0.51 -3.94 11.42 -39.27 -0.45 -4.38 16 21 C -0.09 -0.69 2.72 -89.71 -0.24 -0.94 16 22 C -0.13 -0.92 6.20 -25.92 -0.16 -1.08 16 23 C -0.14 -0.88 8.08 -25.92 -0.21 -1.09 16 24 C -0.13 -0.83 7.65 -25.82 -0.20 -1.03 16 25 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.39 6.01 8.49 -40.82 -0.35 5.66 16 31 H 0.40 4.09 6.96 -40.82 -0.28 3.81 16 32 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.41 1.76 9.10 45.56 0.41 2.18 16 35 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.64 7.97 -51.93 -0.41 0.22 16 37 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.48 7.98 -51.93 -0.41 0.06 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 345.24 15.07 5.20 5.20 Total: -1.00 -34.36 345.24 -8.16 -42.52 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -5.65 Total: 5.08 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -2.08 Total: 2.72 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: 0.04 Total: -48.50 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.65 Total: -23.42 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.36 -8.16 -42.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596654727.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.944 kcal (2) G-P(sol) polarization free energy of solvation -34.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds