Wall clock time and date at job start Tue Mar 31 2020 05:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00304 * 2 1 4 4 H 1.48496 * 109.47187 * 240.00185 * 3 2 1 5 5 H 1.48496 * 109.47157 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47000 * 120.00201 * 3 2 1 7 7 C 1.37883 * 119.99228 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99417 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00337 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47193 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.47227 * 179.97438 * 10 9 7 12 12 C 1.34776 * 120.00060 * 179.97438 * 11 10 9 13 13 O 1.21589 * 120.00186 * 0.02562 * 12 11 10 14 14 N 1.34780 * 120.00261 * 180.02562 * 12 11 10 15 15 C 1.46498 * 120.00235 * 180.02562 * 14 12 11 16 16 C 1.52994 * 109.47175 * 180.02562 * 15 14 12 17 17 H 1.09005 * 109.46999 * 304.99868 * 16 15 14 18 18 C 1.50699 * 109.47229 * 65.00148 * 16 15 14 19 19 O 1.20821 * 120.00058 * 120.00068 * 18 16 15 20 20 O 1.34234 * 119.99673 * 299.99548 * 18 16 15 21 21 C 1.52998 * 109.47346 * 185.00052 * 16 15 14 22 22 C 1.53782 * 113.61779 * 179.97438 * 21 16 15 23 23 C 1.53781 * 87.08260 * 219.93457 * 22 21 16 24 24 C 1.53786 * 87.17350 * 25.39213 * 23 22 21 25 25 H 0.97002 * 119.99539 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47516 * 59.99893 * 9 7 2 27 27 H 1.08999 * 109.46868 * 300.00039 * 9 7 2 28 28 H 1.08998 * 109.47060 * 59.99512 * 10 9 7 29 29 H 1.08999 * 109.47163 * 299.99757 * 10 9 7 30 30 H 0.97000 * 120.00250 * 0.02562 * 11 10 9 31 31 H 0.97001 * 119.99341 * 359.97438 * 14 12 11 32 32 H 1.09007 * 109.46940 * 59.99756 * 15 14 12 33 33 H 1.09004 * 109.47190 * 300.00554 * 15 14 12 34 34 H 0.96698 * 116.99766 * 179.97438 * 20 18 16 35 35 H 1.08997 * 112.84789 * 311.19983 * 21 16 15 36 36 H 1.09001 * 113.61250 * 105.38275 * 22 21 16 37 37 H 1.08997 * 113.61225 * 334.48116 * 22 21 16 38 38 H 1.09002 * 113.61445 * 139.98212 * 23 22 21 39 39 H 1.09002 * 113.61408 * 270.79943 * 23 22 21 40 40 H 1.08993 * 113.61491 * 89.15923 * 24 23 22 41 41 H 1.09000 * 113.61138 * 220.06261 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 7 1.5124 -4.9308 0.0001 12 6 2.1862 -6.0981 -0.0003 13 8 3.4021 -6.0982 -0.0007 14 7 1.5123 -7.2653 -0.0003 15 6 2.2447 -8.5341 -0.0002 16 6 1.2504 -9.6969 -0.0008 17 1 0.5659 -9.5901 0.8408 18 6 0.4681 -9.6883 -1.2888 19 8 0.5143 -10.6413 -2.0300 20 8 -0.2800 -8.6218 -1.6125 21 6 2.0110 -11.0184 0.1251 22 6 1.0983 -12.2561 0.1348 23 6 2.0240 -12.8329 1.2189 24 6 2.3878 -11.3813 1.5731 25 1 -0.4849 0.8401 0.0004 26 1 0.6238 -2.5567 -0.8902 27 1 0.6246 -2.5570 0.8897 28 1 2.8717 -3.6045 0.8894 29 1 2.8716 -3.6045 -0.8905 30 1 0.5424 -4.9308 0.0000 31 1 0.5423 -7.2651 0.0004 32 1 2.8713 -8.5917 0.8899 33 1 2.8715 -8.5919 -0.8901 34 1 -0.7636 -8.6624 -2.4489 35 1 2.8442 -11.0954 -0.5735 36 1 1.1156 -12.8186 -0.7987 37 1 0.0878 -12.0505 0.4878 38 1 1.4925 -13.3562 2.0137 39 1 2.8596 -13.4074 0.8191 40 1 1.7304 -10.9362 2.3199 41 1 3.4445 -11.2387 1.7991 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596654727.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:28 Heat of formation + Delta-G solvation = -146.102896 kcal Electronic energy + Delta-G solvation = -22129.859487 eV Core-core repulsion = 18622.712208 eV Total energy + Delta-G solvation = -3507.147280 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.80398 -40.77838 -39.48465 -37.10305 -36.77541 -35.98072 -34.78891 -32.65267 -31.06074 -27.13694 -26.53424 -25.66996 -25.09774 -22.90131 -21.95543 -21.67148 -20.36945 -19.54152 -18.82840 -18.38014 -17.89315 -17.39769 -16.68720 -16.49477 -16.46301 -16.13358 -15.73031 -15.25826 -15.11722 -14.95444 -14.50486 -14.23555 -13.59301 -13.56911 -13.28396 -13.18884 -12.90085 -12.67266 -12.62857 -12.51703 -12.43397 -12.19345 -11.72288 -11.66575 -11.54746 -11.46098 -11.26109 -11.06031 -11.04053 -10.57937 -10.32244 -9.68478 -8.21964 -6.31930 1.17857 1.43452 1.45806 1.53527 1.77035 2.06653 2.20823 2.43124 3.12901 3.31888 3.45651 3.70232 3.73309 3.94153 4.02737 4.13124 4.26152 4.44499 4.51056 4.56007 4.68591 4.73813 4.87610 4.90379 4.93272 4.97462 5.15216 5.20268 5.33847 5.34590 5.47218 5.55037 5.60527 5.63059 5.64016 5.81790 6.08788 6.19990 6.81279 6.97906 7.18029 7.37231 7.63781 8.89753 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.036635 B = 0.002661 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.103896 B =10519.125682 C =10958.757162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.964 3.036 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.161 3.839 11 N -0.732 5.732 12 C 0.698 3.302 13 O -0.641 6.641 14 N -0.729 5.729 15 C 0.152 3.848 16 C -0.071 4.071 17 H 0.140 0.860 18 C 0.485 3.515 19 O -0.536 6.536 20 O -0.513 6.513 21 C -0.098 4.098 22 C -0.126 4.126 23 C -0.140 4.140 24 C -0.129 4.129 25 H 0.266 0.734 26 H 0.008 0.992 27 H 0.010 0.990 28 H 0.044 0.956 29 H 0.042 0.958 30 H 0.407 0.593 31 H 0.414 0.586 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.427 0.573 35 H 0.091 0.909 36 H 0.058 0.942 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.096 0.904 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.969 -24.876 1.933 25.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.789 3.211 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.585 4.585 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.036 3.964 11 N -0.387 5.387 12 C 0.398 3.602 13 O -0.523 6.523 14 N -0.388 5.388 15 C 0.027 3.973 16 C -0.091 4.091 17 H 0.158 0.842 18 C 0.328 3.672 19 O -0.426 6.426 20 O -0.327 6.327 21 C -0.117 4.117 22 C -0.164 4.164 23 C -0.178 4.178 24 C -0.167 4.167 25 H 0.074 0.926 26 H 0.027 0.973 27 H 0.028 0.972 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.242 0.758 31 H 0.252 0.748 32 H 0.105 0.895 33 H 0.072 0.928 34 H 0.289 0.711 35 H 0.110 0.890 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.115 0.885 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.807 -24.998 2.086 25.098 hybrid contribution -0.907 1.011 -0.889 1.623 sum -1.714 -23.987 1.197 24.078 Atomic orbital electron populations 1.70053 1.07506 1.28018 1.51043 1.25862 0.95798 1.03040 0.94462 0.85510 0.78307 0.78185 0.79120 1.19412 1.20632 1.19319 1.21451 0.93616 0.91956 1.51499 0.92304 1.19118 0.94228 0.91598 0.96372 1.21061 0.94599 0.81156 0.99568 1.45192 1.10388 1.04387 1.78730 1.16136 0.85076 0.81277 0.77710 1.90866 1.13746 1.87388 1.60331 1.44963 1.10507 1.03348 1.79966 1.21071 0.93382 0.79710 1.03101 1.21459 0.96912 0.96635 0.94065 0.84245 1.23586 0.76546 0.79125 0.87966 1.90714 1.62747 1.36625 1.52498 1.84447 1.58647 1.43045 1.46564 1.22482 0.98887 0.90765 0.99523 1.22846 0.98140 0.96148 0.99254 1.22827 0.99683 0.96483 0.98765 1.23046 1.02638 0.96407 0.94563 0.92566 0.97339 0.97206 0.93743 0.94004 0.75766 0.74838 0.89477 0.92774 0.71107 0.89044 0.92310 0.89989 0.90359 0.89986 0.88545 0.90599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.13 13.29 21.45 0.28 -53.84 16 2 C 0.01 0.40 5.46 84.66 0.46 0.86 16 3 Si 0.96 43.52 29.54 68.60 2.03 45.54 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.55 -30.52 9.11 25.60 0.23 -30.29 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 9 C 0.02 1.22 5.09 29.85 0.15 1.38 16 10 C 0.16 6.96 5.61 86.38 0.48 7.45 16 11 N -0.73 -25.45 5.56 -478.54 -2.66 -28.11 16 12 C 0.70 23.73 8.57 179.05 1.53 25.26 16 13 O -0.64 -27.36 16.34 -4.00 -0.07 -27.42 16 14 N -0.73 -16.85 5.06 -478.53 -2.42 -19.27 16 15 C 0.15 2.98 5.05 86.38 0.44 3.41 16 16 C -0.07 -0.99 2.12 -11.54 -0.02 -1.02 16 17 H 0.14 1.31 7.96 -2.38 -0.02 1.29 16 18 C 0.48 8.26 7.43 71.24 0.53 8.79 16 19 O -0.54 -12.14 15.61 21.98 0.34 -11.80 16 20 O -0.51 -6.90 11.42 -51.46 -0.59 -7.49 16 21 C -0.10 -1.32 2.72 -10.21 -0.03 -1.35 16 22 C -0.13 -1.69 6.20 31.12 0.19 -1.50 16 23 C -0.14 -1.47 8.08 31.12 0.25 -1.22 16 24 C -0.13 -1.34 7.65 31.18 0.24 -1.10 16 25 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 26 H 0.01 0.43 8.14 -2.39 -0.02 0.42 16 27 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.41 11.95 8.49 -92.71 -0.79 11.16 16 31 H 0.41 7.47 6.96 -92.71 -0.65 6.83 16 32 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 33 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 34 H 0.43 2.93 9.10 -74.06 -0.67 2.26 16 35 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.06 0.98 7.97 -2.39 -0.02 0.96 16 37 H 0.08 1.01 8.10 -2.39 -0.02 0.99 16 38 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.10 0.80 7.98 -2.39 -0.02 0.78 16 41 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -73.10 345.24 0.33 -72.77 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -1.05 Total: 18.94 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: 4.46 Total: 10.68 kcal Atomic # 7 Polarization: -96.43 SS G_CDS: -4.80 Total: -101.23 kcal Atomic # 8 Polarization: -46.39 SS G_CDS: -0.31 Total: -46.70 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -73.10 0.33 -72.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596654727.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.335 kcal (2) G-P(sol) polarization free energy of solvation -73.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds