Wall clock time and date at job start Tue Mar 31 2020 06:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00183 * 2 1 4 4 H 1.48506 * 109.46980 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47160 * 299.99889 * 3 2 1 6 6 H 1.48504 * 109.46962 * 60.00052 * 3 2 1 7 7 C 1.37878 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00374 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99536 * 0.02562 * 7 2 1 10 10 H 1.08993 * 109.50741 * 60.07838 * 9 7 2 11 11 C 1.53115 * 109.50071 * 299.99375 * 9 7 2 12 12 C 1.53122 * 109.15842 * 182.40659 * 11 9 7 13 13 C 1.53030 * 109.28065 * 57.65920 * 12 11 9 14 14 N 1.46850 * 109.52132 * 300.82011 * 13 12 11 15 15 C 1.46898 * 111.00160 * 185.83850 * 14 13 12 16 16 C 1.50705 * 109.47141 * 66.04265 * 15 14 13 17 17 C 1.37791 * 120.11186 * 259.99971 * 16 15 14 18 18 C 1.38786 * 120.66080 * 179.97438 * 17 16 15 19 19 C 1.36659 * 120.53189 * 0.02562 * 18 17 16 20 20 C 1.39594 * 119.76451 * 359.97438 * 19 18 17 21 21 C 1.46494 * 134.03619 * 179.97438 * 20 19 18 22 22 C 1.34232 * 106.99780 * 180.02562 * 21 20 19 23 23 N 1.36835 * 109.93943 * 359.97438 * 22 21 20 24 24 H 0.96997 * 125.06640 * 179.73760 * 23 22 21 25 25 C 1.37694 * 109.87336 * 0.02562 * 23 22 21 26 26 C 1.46850 * 111.19832 * 61.74008 * 14 13 12 27 27 H 0.97003 * 120.00067 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.52535 * 62.50501 * 11 9 7 29 29 H 1.08995 * 109.58258 * 302.34222 * 11 9 7 30 30 H 1.09000 * 109.50715 * 297.71567 * 12 11 9 31 31 H 1.09004 * 109.50099 * 177.60100 * 12 11 9 32 32 H 1.08998 * 109.46684 * 180.80868 * 13 12 11 33 33 H 1.08995 * 109.46508 * 60.83162 * 13 12 11 34 34 H 1.09006 * 109.47207 * 306.04838 * 15 14 13 35 35 H 1.08996 * 109.47344 * 186.04709 * 15 14 13 36 36 H 1.08000 * 119.66929 * 359.95945 * 17 16 15 37 37 H 1.07997 * 119.73456 * 179.97438 * 18 17 16 38 38 H 1.08003 * 120.11984 * 179.97438 * 19 18 17 39 39 H 1.08002 * 126.50047 * 0.04478 * 21 20 19 40 40 H 1.07998 * 125.03134 * 180.02562 * 22 21 20 41 41 H 1.09004 * 109.46145 * 58.27225 * 26 14 13 42 42 H 1.08995 * 109.46104 * 178.23805 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 1 0.6255 -2.5583 -0.8901 11 6 0.3700 -2.5807 1.2502 12 6 -0.3457 -3.9341 1.2731 13 6 0.6943 -5.0563 1.2418 14 7 1.5110 -4.9347 0.0274 15 6 2.4285 -6.0741 -0.1063 16 6 1.6343 -7.3347 -0.3330 17 6 1.3952 -8.1987 0.7134 18 6 0.6648 -9.3625 0.5176 19 6 0.1700 -9.6720 -0.7181 20 6 0.4004 -8.8109 -1.7924 21 6 0.0302 -8.8293 -3.2097 22 6 0.5398 -7.7174 -3.7628 23 7 1.2056 -6.9880 -2.8156 24 1 1.6603 -6.1468 -2.9780 25 6 1.1395 -7.6294 -1.5990 26 6 2.2447 -3.6629 0.0061 27 1 -0.4850 0.8401 -0.0004 28 1 -0.3679 -1.7788 1.2288 29 1 0.9899 -2.4814 2.1412 30 1 -0.9963 -4.0166 0.4024 31 1 -0.9416 -4.0154 2.1822 32 1 0.1875 -6.0213 1.2434 33 1 1.3358 -4.9816 2.1198 34 1 3.0177 -6.1750 0.8052 35 1 3.0944 -5.9070 -0.9528 36 1 1.7802 -7.9681 1.6958 37 1 0.4866 -10.0292 1.3483 38 1 -0.3971 -10.5796 -0.8631 39 1 -0.5440 -9.5925 -3.7138 40 1 0.4385 -7.4392 -4.8014 41 1 2.8790 -3.5947 0.8900 42 1 2.8641 -3.6159 -0.8896 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597173341.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:56 Heat of formation + Delta-G solvation = 49.776152 kcal Electronic energy + Delta-G solvation = -22293.338824 eV Core-core repulsion = 19237.827512 eV Total energy + Delta-G solvation = -3055.511313 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.11337 -38.33748 -36.74231 -34.11546 -32.41208 -31.01966 -29.88467 -29.28956 -28.63924 -25.74736 -24.92918 -22.45194 -21.77407 -21.57781 -21.08651 -20.02108 -18.58654 -17.60634 -16.41009 -16.02309 -15.25867 -15.15251 -14.63666 -14.43906 -14.06421 -13.97231 -13.60520 -13.21248 -13.03367 -12.76364 -12.50881 -12.40327 -12.12666 -11.84337 -11.57652 -11.44719 -11.11388 -10.98357 -10.81491 -10.68318 -10.54576 -10.09246 -9.84244 -9.50771 -9.46363 -9.04193 -8.70802 -8.32270 -8.05275 -7.73377 -7.49000 -5.99036 -4.05657 1.23923 1.81475 2.83490 3.28031 3.35722 3.36321 3.39587 3.99753 4.40499 4.65157 4.82891 4.91655 5.11047 5.23069 5.31023 5.37018 5.44785 5.65500 5.68964 5.75516 5.84521 5.87627 5.96300 6.11642 6.13717 6.19625 6.28220 6.38389 6.50185 6.65921 6.71436 6.75007 6.76367 6.85151 6.90100 6.95745 7.22101 7.32044 7.39630 7.66504 7.69749 7.73634 7.80190 8.06246 8.16739 8.46364 8.98719 9.58911 11.06746 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.025593 B = 0.004086 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.794100 B = 6851.391282 C = 7302.789464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.515 4.515 8 H 0.053 0.947 9 C 0.056 3.944 10 H 0.032 0.968 11 C -0.110 4.110 12 C -0.116 4.116 13 C 0.063 3.937 14 N -0.533 5.533 15 C 0.091 3.909 16 C -0.074 4.074 17 C -0.102 4.102 18 C -0.146 4.146 19 C -0.080 4.080 20 C -0.114 4.114 21 C -0.215 4.215 22 C 0.053 3.947 23 N -0.585 5.585 24 H 0.419 0.581 25 C 0.121 3.879 26 C 0.067 3.933 27 H 0.259 0.741 28 H 0.090 0.910 29 H 0.029 0.971 30 H 0.058 0.942 31 H 0.045 0.955 32 H 0.062 0.938 33 H 0.022 0.978 34 H 0.038 0.962 35 H 0.070 0.930 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.142 0.858 40 H 0.167 0.833 41 H 0.020 0.980 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.228 -17.146 -2.700 17.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.072 0.928 9 C 0.038 3.962 10 H 0.051 0.949 11 C -0.148 4.148 12 C -0.154 4.154 13 C -0.065 4.065 14 N -0.258 5.258 15 C -0.037 4.037 16 C -0.077 4.077 17 C -0.123 4.123 18 C -0.166 4.166 19 C -0.099 4.099 20 C -0.119 4.119 21 C -0.241 4.241 22 C -0.074 4.074 23 N -0.186 5.186 24 H 0.257 0.743 25 C 0.013 3.987 26 C -0.060 4.060 27 H 0.069 0.931 28 H 0.108 0.892 29 H 0.048 0.952 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.040 0.960 34 H 0.056 0.944 35 H 0.089 0.911 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.159 0.841 40 H 0.184 0.816 41 H 0.038 0.962 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.829 -16.884 -3.158 17.197 hybrid contribution 1.149 1.363 0.631 1.891 sum 1.978 -15.521 -2.527 15.849 Atomic orbital electron populations 1.69904 1.05845 1.26212 1.50661 1.24933 0.94808 0.98943 0.95117 0.86585 0.80116 0.83996 0.77566 1.19874 1.21048 1.21068 1.21184 0.92824 0.90677 1.50708 0.92836 1.18647 0.92538 0.90200 0.94853 0.94949 1.21648 1.00013 0.94785 0.98381 1.21662 0.97215 0.96425 1.00115 1.22040 0.95551 0.99118 0.89748 1.62064 1.23503 1.01549 1.38644 1.20958 0.93366 0.88823 1.00513 1.18850 1.01607 0.96825 0.90370 1.20698 0.99628 0.94396 0.97532 1.20523 1.01120 0.97955 0.96958 1.20170 0.99660 0.98452 0.91583 1.19206 1.02633 0.95777 0.94234 1.21596 1.09195 1.00630 0.92644 1.21808 0.97847 0.93178 0.94581 1.41847 1.47794 1.22262 1.06698 0.74331 1.17949 1.00643 0.93354 0.86799 1.22336 0.96468 0.88526 0.98656 0.93105 0.89165 0.95195 0.92299 0.93589 0.91910 0.96024 0.94366 0.91122 0.86279 0.86437 0.86568 0.84060 0.81588 0.96216 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.28 11.35 55.43 0.63 -24.66 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 21.14 29.54 -169.99 -5.02 16.11 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.52 -14.01 8.56 -34.44 -0.29 -14.30 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.06 1.40 2.26 -91.69 -0.21 1.19 16 10 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 11 C -0.11 -2.63 5.02 -26.61 -0.13 -2.76 16 12 C -0.12 -2.35 6.09 -26.65 -0.16 -2.51 16 13 C 0.06 1.15 5.26 -3.84 -0.02 1.13 16 14 N -0.53 -9.75 4.65 -236.11 -1.10 -10.85 16 15 C 0.09 1.40 5.11 -4.97 -0.03 1.38 16 16 C -0.07 -1.09 4.60 -104.47 -0.48 -1.57 16 17 C -0.10 -1.37 8.54 -39.54 -0.34 -1.71 16 18 C -0.15 -1.79 9.97 -39.95 -0.40 -2.19 16 19 C -0.08 -1.01 10.05 -39.65 -0.40 -1.41 16 20 C -0.11 -1.61 6.37 -105.14 -0.67 -2.28 16 21 C -0.22 -2.60 11.08 -37.67 -0.42 -3.02 16 22 C 0.05 0.60 11.81 -16.73 -0.20 0.40 16 23 N -0.58 -7.67 6.07 -10.65 -0.06 -7.73 16 24 H 0.42 5.12 8.96 -40.82 -0.37 4.75 16 25 C 0.12 1.80 6.98 -83.99 -0.59 1.21 16 26 C 0.07 1.40 4.68 -3.83 -0.02 1.38 16 27 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.09 2.41 6.15 -51.93 -0.32 2.09 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 1.08 6.32 -51.93 -0.33 0.75 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.04 0.57 7.98 -51.93 -0.41 0.15 16 35 H 0.07 1.03 7.98 -51.93 -0.41 0.62 16 36 H 0.12 1.42 8.03 -52.49 -0.42 1.00 16 37 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 39 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 40 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 1.14 8.01 -51.93 -0.42 0.73 16 LS Contribution 335.20 15.07 5.05 5.05 Total: -1.00 -29.71 335.20 -11.39 -41.10 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -6.45 Total: 4.38 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: -4.44 Total: -23.42 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: -0.53 Total: -43.24 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.71 -11.39 -41.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597173341.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.880 kcal (2) G-P(sol) polarization free energy of solvation -29.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds