Wall clock time and date at job start Tue Mar 31 2020 06:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00183 * 2 1 4 4 H 1.48506 * 109.46980 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47160 * 299.99889 * 3 2 1 6 6 H 1.48504 * 109.46962 * 60.00052 * 3 2 1 7 7 C 1.37878 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00374 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99536 * 0.02562 * 7 2 1 10 10 H 1.08993 * 109.50741 * 60.07838 * 9 7 2 11 11 C 1.53115 * 109.50071 * 299.99375 * 9 7 2 12 12 C 1.53122 * 109.15842 * 182.40659 * 11 9 7 13 13 C 1.53030 * 109.28065 * 57.65920 * 12 11 9 14 14 N 1.46850 * 109.52132 * 300.82011 * 13 12 11 15 15 C 1.46898 * 111.00160 * 185.83850 * 14 13 12 16 16 C 1.50705 * 109.47141 * 66.04265 * 15 14 13 17 17 C 1.37791 * 120.11186 * 259.99971 * 16 15 14 18 18 C 1.38786 * 120.66080 * 179.97438 * 17 16 15 19 19 C 1.36659 * 120.53189 * 0.02562 * 18 17 16 20 20 C 1.39594 * 119.76451 * 359.97438 * 19 18 17 21 21 C 1.46494 * 134.03619 * 179.97438 * 20 19 18 22 22 C 1.34232 * 106.99780 * 180.02562 * 21 20 19 23 23 N 1.36835 * 109.93943 * 359.97438 * 22 21 20 24 24 H 0.96997 * 125.06640 * 179.73760 * 23 22 21 25 25 C 1.37694 * 109.87336 * 0.02562 * 23 22 21 26 26 C 1.46850 * 111.19832 * 61.74008 * 14 13 12 27 27 H 0.97003 * 120.00067 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.52535 * 62.50501 * 11 9 7 29 29 H 1.08995 * 109.58258 * 302.34222 * 11 9 7 30 30 H 1.09000 * 109.50715 * 297.71567 * 12 11 9 31 31 H 1.09004 * 109.50099 * 177.60100 * 12 11 9 32 32 H 1.08998 * 109.46684 * 180.80868 * 13 12 11 33 33 H 1.08995 * 109.46508 * 60.83162 * 13 12 11 34 34 H 1.09006 * 109.47207 * 306.04838 * 15 14 13 35 35 H 1.08996 * 109.47344 * 186.04709 * 15 14 13 36 36 H 1.08000 * 119.66929 * 359.95945 * 17 16 15 37 37 H 1.07997 * 119.73456 * 179.97438 * 18 17 16 38 38 H 1.08003 * 120.11984 * 179.97438 * 19 18 17 39 39 H 1.08002 * 126.50047 * 0.04478 * 21 20 19 40 40 H 1.07998 * 125.03134 * 180.02562 * 22 21 20 41 41 H 1.09004 * 109.46145 * 58.27225 * 26 14 13 42 42 H 1.08995 * 109.46104 * 178.23805 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 1 0.6255 -2.5583 -0.8901 11 6 0.3700 -2.5807 1.2502 12 6 -0.3457 -3.9341 1.2731 13 6 0.6943 -5.0563 1.2418 14 7 1.5110 -4.9347 0.0274 15 6 2.4285 -6.0741 -0.1063 16 6 1.6343 -7.3347 -0.3330 17 6 1.3952 -8.1987 0.7134 18 6 0.6648 -9.3625 0.5176 19 6 0.1700 -9.6720 -0.7181 20 6 0.4004 -8.8109 -1.7924 21 6 0.0302 -8.8293 -3.2097 22 6 0.5398 -7.7174 -3.7628 23 7 1.2056 -6.9880 -2.8156 24 1 1.6603 -6.1468 -2.9780 25 6 1.1395 -7.6294 -1.5990 26 6 2.2447 -3.6629 0.0061 27 1 -0.4850 0.8401 -0.0004 28 1 -0.3679 -1.7788 1.2288 29 1 0.9899 -2.4814 2.1412 30 1 -0.9963 -4.0166 0.4024 31 1 -0.9416 -4.0154 2.1822 32 1 0.1875 -6.0213 1.2434 33 1 1.3358 -4.9816 2.1198 34 1 3.0177 -6.1750 0.8052 35 1 3.0944 -5.9070 -0.9528 36 1 1.7802 -7.9681 1.6958 37 1 0.4866 -10.0292 1.3483 38 1 -0.3971 -10.5796 -0.8631 39 1 -0.5440 -9.5925 -3.7138 40 1 0.4385 -7.4392 -4.8014 41 1 2.8790 -3.5947 0.8900 42 1 2.8641 -3.6159 -0.8896 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597173341.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:56 Heat of formation + Delta-G solvation = 33.552961 kcal Electronic energy + Delta-G solvation = -22294.042315 eV Core-core repulsion = 19237.827512 eV Total energy + Delta-G solvation = -3056.214803 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.07307 -39.86135 -37.80870 -35.76580 -34.06006 -32.36142 -31.64950 -30.35596 -29.60826 -27.03752 -26.91500 -23.85969 -23.32572 -22.58216 -22.39969 -21.02032 -20.36424 -18.66182 -18.36162 -17.04114 -16.76008 -16.44445 -16.15814 -15.81248 -15.23964 -15.17470 -14.99000 -14.75110 -14.43648 -14.19306 -13.91672 -13.70508 -13.37439 -13.35092 -12.90235 -12.84337 -12.63609 -12.57970 -12.37749 -12.19495 -11.84876 -11.77684 -11.68804 -11.38784 -10.89418 -10.68725 -10.45232 -10.39195 -9.17404 -9.02939 -8.48384 -8.09085 -6.23669 0.25892 0.83135 1.39213 1.41210 1.52208 1.91850 2.41664 2.43987 2.92223 3.18026 3.30365 3.80029 3.98502 4.10633 4.18608 4.24686 4.29971 4.35900 4.42310 4.52008 4.59565 4.64149 4.71815 4.74663 4.87276 4.88330 4.95969 5.04878 5.08460 5.15733 5.21217 5.23005 5.35737 5.49652 5.62210 5.68142 5.75638 5.92494 5.95183 5.96960 6.09947 6.19501 6.29357 6.38013 6.44476 6.76876 6.89459 7.44680 8.95575 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.025593 B = 0.004086 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.794100 B = 6851.391282 C = 7302.789464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.015 3.985 3 Si 0.954 3.046 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.535 4.535 8 H 0.052 0.948 9 C 0.056 3.944 10 H -0.005 1.005 11 C -0.103 4.103 12 C -0.109 4.109 13 C 0.071 3.929 14 N -0.539 5.539 15 C 0.097 3.903 16 C -0.093 4.093 17 C -0.107 4.107 18 C -0.149 4.149 19 C -0.085 4.085 20 C -0.137 4.137 21 C -0.228 4.228 22 C 0.053 3.947 23 N -0.592 5.592 24 H 0.420 0.580 25 C 0.095 3.905 26 C 0.081 3.919 27 H 0.260 0.740 28 H 0.057 0.943 29 H 0.023 0.977 30 H 0.043 0.957 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.028 0.972 34 H 0.047 0.953 35 H 0.074 0.926 36 H 0.132 0.868 37 H 0.144 0.856 38 H 0.139 0.861 39 H 0.163 0.837 40 H 0.200 0.800 41 H 0.017 0.983 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.670 -18.600 -2.576 18.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.184 4.184 3 Si 0.780 3.220 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.573 4.573 8 H 0.071 0.929 9 C 0.037 3.963 10 H 0.013 0.987 11 C -0.141 4.141 12 C -0.147 4.147 13 C -0.057 4.057 14 N -0.264 5.264 15 C -0.030 4.030 16 C -0.096 4.096 17 C -0.127 4.127 18 C -0.168 4.168 19 C -0.103 4.103 20 C -0.142 4.142 21 C -0.253 4.253 22 C -0.073 4.073 23 N -0.194 5.194 24 H 0.257 0.743 25 C -0.014 4.014 26 C -0.046 4.046 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.042 0.958 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.046 0.954 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.150 0.850 37 H 0.162 0.838 38 H 0.157 0.843 39 H 0.181 0.819 40 H 0.217 0.783 41 H 0.035 0.965 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.278 -18.358 -3.039 18.651 hybrid contribution 0.973 1.758 0.557 2.085 sum 2.251 -16.600 -2.482 16.935 Atomic orbital electron populations 1.70049 1.07235 1.26983 1.51282 1.25715 0.95606 1.02327 0.94767 0.85572 0.79114 0.79784 0.77564 1.19082 1.20651 1.20706 1.21546 0.93003 0.92084 1.50700 0.92932 1.18553 0.92882 0.91329 0.93554 0.98720 1.21456 0.99120 0.95962 0.97553 1.21563 0.97529 0.95122 1.00463 1.21962 0.95070 0.98739 0.89927 1.61973 1.24100 1.01408 1.38873 1.20929 0.93036 0.87976 1.01027 1.18855 1.02762 0.96904 0.91047 1.20950 0.99448 0.94560 0.97711 1.20848 1.00325 0.97889 0.97730 1.20535 0.99414 0.98973 0.91415 1.19654 1.02935 0.95953 0.95619 1.21957 1.09705 1.01571 0.92053 1.22423 0.96589 0.92606 0.95715 1.41998 1.48106 1.22460 1.06791 0.74317 1.18241 1.01500 0.94242 0.87384 1.22006 0.95311 0.88635 0.98645 0.93105 0.92482 0.95772 0.93823 0.91491 0.90265 0.95371 0.93524 0.90769 0.85016 0.83787 0.84341 0.81908 0.78293 0.96509 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.54 11.35 21.45 0.24 -53.30 16 2 C 0.01 0.81 5.30 84.66 0.45 1.26 16 3 Si 0.95 43.70 29.54 68.60 2.03 45.73 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 7 C -0.53 -29.63 8.56 25.60 0.22 -29.41 16 8 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 9 C 0.06 2.84 2.26 -11.49 -0.03 2.82 16 10 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 11 C -0.10 -5.02 5.02 30.67 0.15 -4.86 16 12 C -0.11 -4.39 6.09 30.65 0.19 -4.20 16 13 C 0.07 2.49 5.26 86.32 0.45 2.94 16 14 N -0.54 -19.44 4.65 -900.93 -4.19 -23.63 16 15 C 0.10 2.89 5.11 85.56 0.44 3.33 16 16 C -0.09 -2.62 4.60 -19.77 -0.09 -2.71 16 17 C -0.11 -2.64 8.54 22.29 0.19 -2.45 16 18 C -0.15 -3.28 9.97 22.03 0.22 -3.06 16 19 C -0.08 -1.96 10.05 22.23 0.22 -1.74 16 20 C -0.14 -3.66 6.37 -20.20 -0.13 -3.79 16 21 C -0.23 -5.11 11.08 23.51 0.26 -4.85 16 22 C 0.05 1.12 11.81 83.00 0.98 2.10 16 23 N -0.59 -15.11 6.07 -187.62 -1.14 -16.25 16 24 H 0.42 10.17 8.96 -92.71 -0.83 9.34 16 25 C 0.09 2.73 6.98 39.03 0.27 3.00 16 26 C 0.08 3.41 4.68 86.32 0.40 3.82 16 27 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 28 H 0.06 3.16 6.15 -2.39 -0.01 3.14 16 29 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 32 H 0.08 2.56 6.32 -2.39 -0.02 2.55 16 33 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.05 1.31 7.98 -2.38 -0.02 1.29 16 35 H 0.07 2.11 7.98 -2.39 -0.02 2.09 16 36 H 0.13 2.82 8.03 -2.91 -0.02 2.80 16 37 H 0.14 2.32 8.06 -2.91 -0.02 2.29 16 38 H 0.14 2.47 8.06 -2.91 -0.02 2.44 16 39 H 0.16 2.76 8.06 -2.91 -0.02 2.74 16 40 H 0.20 2.57 8.06 -2.91 -0.02 2.55 16 41 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 42 H 0.06 2.42 8.01 -2.39 -0.02 2.40 16 Total: -1.00 -64.76 335.20 1.33 -63.43 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: 0.18 Total: 21.83 kcal Atomic # 6 Polarization: -42.02 SS G_CDS: 4.21 Total: -37.81 kcal Atomic # 7 Polarization: -88.09 SS G_CDS: -5.08 Total: -93.17 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -64.76 1.33 -63.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597173341.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.981 kcal (2) G-P(sol) polarization free energy of solvation -64.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds