Wall clock time and date at job start Tue Mar 31 2020 06:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 120.00186 * 2 1 4 4 H 1.48506 * 109.47188 * 264.78427 * 3 2 1 5 5 H 1.48496 * 109.47096 * 24.78249 * 3 2 1 6 6 H 1.48500 * 109.47334 * 144.78270 * 3 2 1 7 7 C 1.37886 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99722 * 5.77312 * 7 2 1 9 9 C 1.50693 * 119.99913 * 185.76888 * 7 2 1 10 10 H 1.09002 * 109.53589 * 335.26855 * 9 7 2 11 11 C 1.53126 * 109.50250 * 95.36769 * 9 7 2 12 12 C 1.53115 * 109.15828 * 177.59368 * 11 9 7 13 13 C 1.53037 * 109.28123 * 302.34363 * 12 11 9 14 14 N 1.46845 * 109.52225 * 59.18123 * 13 12 11 15 15 C 1.46900 * 111.00116 * 174.16034 * 14 13 12 16 16 C 1.50696 * 109.47241 * 294.21467 * 15 14 13 17 17 C 1.36671 * 120.11510 * 259.97943 * 16 15 14 18 18 C 1.38782 * 120.53114 * 180.02562 * 17 16 15 19 19 C 1.37794 * 120.66301 * 0.02562 * 18 17 16 20 20 C 1.39083 * 119.77738 * 359.95612 * 19 18 17 21 21 N 1.37690 * 133.50671 * 179.72662 * 20 19 18 22 22 H 0.97001 * 125.06251 * 0.25307 * 21 20 19 23 23 C 1.36836 * 109.87299 * 179.97438 * 21 20 19 24 24 C 1.34235 * 109.93800 * 0.37570 * 23 21 20 25 25 C 1.39586 * 120.12156 * 79.99528 * 16 15 14 26 26 C 1.46849 * 111.20063 * 298.25970 * 14 13 12 27 27 H 0.97003 * 119.99946 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.52296 * 297.49768 * 11 9 7 29 29 H 1.08995 * 109.52074 * 57.62722 * 11 9 7 30 30 H 1.09000 * 109.50600 * 62.28843 * 12 11 9 31 31 H 1.09008 * 109.50233 * 182.36751 * 12 11 9 32 32 H 1.09002 * 109.46242 * 299.16476 * 13 12 11 33 33 H 1.08995 * 109.46386 * 179.19818 * 13 12 11 34 34 H 1.09003 * 109.47077 * 174.21287 * 15 14 13 35 35 H 1.09003 * 109.47013 * 54.20978 * 15 14 13 36 36 H 1.07997 * 119.73005 * 359.97438 * 17 16 15 37 37 H 1.08001 * 119.67148 * 179.97438 * 18 17 16 38 38 H 1.07999 * 120.11112 * 179.97438 * 19 18 17 39 39 H 1.07996 * 125.02998 * 180.18417 * 23 21 20 40 40 H 1.08000 * 126.50006 * 179.80748 * 24 23 21 41 41 H 1.08996 * 109.46223 * 181.75958 * 26 14 13 42 42 H 1.09004 * 109.45989 * 301.72443 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6069 1.9828 -1.3943 5 1 1.3958 2.6819 0.5869 6 1 3.4872 1.4745 0.8074 7 6 2.0045 -1.1941 -0.0005 8 1 1.4686 -2.1270 -0.0950 9 6 3.5057 -1.1974 0.1306 10 1 3.9042 -0.2446 -0.2179 11 6 3.8902 -1.4063 1.5981 12 6 5.4157 -1.4685 1.7139 13 6 5.9443 -2.5974 0.8260 14 7 5.5509 -2.3510 -0.5672 15 6 6.1575 -3.3401 -1.4682 16 6 7.6538 -3.1619 -1.4755 17 6 8.2590 -2.4867 -2.4981 18 6 9.6365 -2.3180 -2.5138 19 6 10.4185 -2.8279 -1.5003 20 6 9.8237 -3.5181 -0.4495 21 7 10.3161 -4.1348 0.6788 22 1 11.2527 -4.1756 0.9277 23 6 9.2868 -4.6760 1.3999 24 6 8.1202 -4.4437 0.7777 25 6 8.4268 -3.6861 -0.4381 26 6 4.0896 -2.3342 -0.7114 27 1 -0.4850 0.8401 0.0004 28 1 3.5131 -0.5760 2.1951 29 1 3.4582 -2.3399 1.9584 30 1 5.8442 -0.5200 1.3903 31 1 5.6945 -1.6591 2.7503 32 1 5.5261 -3.5473 1.1589 33 1 7.0314 -2.6351 0.8952 34 1 5.7697 -3.1984 -2.4771 35 1 5.9129 -4.3445 -1.1226 36 1 7.6606 -2.0820 -3.3009 37 1 10.1003 -1.7825 -3.3290 38 1 11.4897 -2.6918 -1.5217 39 1 9.3969 -5.2135 2.3301 40 1 7.1412 -4.7548 1.1110 41 1 3.8298 -2.1808 -1.7588 42 1 3.6802 -3.2854 -0.3713 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597175106.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:19 Heat of formation + Delta-G solvation = 58.136129 kcal Electronic energy + Delta-G solvation = -22438.046026 eV Core-core repulsion = 19382.897230 eV Total energy + Delta-G solvation = -3055.148797 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.33131 -38.41331 -36.91481 -34.04839 -32.32695 -31.44959 -30.11942 -29.54406 -28.89790 -25.68981 -24.93330 -22.56506 -21.96045 -21.68397 -21.24553 -19.86441 -18.66590 -17.56120 -16.80194 -16.24231 -15.48584 -15.35604 -14.64691 -14.47439 -14.07816 -14.00568 -13.48768 -13.37955 -13.16838 -12.90750 -12.61995 -12.42619 -12.14786 -12.06756 -11.67802 -11.45282 -11.12606 -10.99176 -10.91807 -10.78944 -10.58688 -10.09102 -9.74945 -9.51140 -9.42269 -9.18155 -8.85213 -8.43367 -8.18011 -7.72870 -7.56208 -6.01867 -4.00471 1.13536 1.69999 2.70456 3.07626 3.37452 3.44601 3.50422 3.89564 4.50323 4.65534 4.75291 4.81224 5.01039 5.15924 5.28902 5.30231 5.41727 5.57579 5.61899 5.67160 5.82459 5.82853 5.92155 6.01802 6.04198 6.15320 6.17143 6.32103 6.43700 6.52360 6.54632 6.62941 6.69403 6.71824 6.79286 6.88150 6.94084 7.02074 7.19140 7.41024 7.46345 7.56858 7.69407 7.75337 7.97063 8.59922 9.03367 9.62692 11.11452 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.025783 B = 0.004403 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.711006 B = 6357.245749 C = 6736.013920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.072 3.928 3 Si 0.878 3.122 4 H -0.276 1.276 5 H -0.292 1.292 6 H -0.263 1.263 7 C -0.511 4.511 8 H 0.070 0.930 9 C 0.021 3.979 10 H 0.039 0.961 11 C -0.111 4.111 12 C -0.120 4.120 13 C 0.052 3.948 14 N -0.535 5.535 15 C 0.092 3.908 16 C -0.017 4.017 17 C -0.134 4.134 18 C -0.095 4.095 19 C -0.141 4.141 20 C 0.093 3.907 21 N -0.601 5.601 22 H 0.412 0.588 23 C 0.041 3.959 24 C -0.196 4.196 25 C -0.100 4.100 26 C 0.072 3.928 27 H 0.263 0.737 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.023 0.977 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.038 0.962 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.115 0.885 39 H 0.167 0.833 40 H 0.146 0.854 41 H 0.066 0.934 42 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.167 -8.357 -0.071 23.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.129 4.129 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.188 1.188 7 C -0.549 4.549 8 H 0.088 0.912 9 C 0.002 3.998 10 H 0.057 0.943 11 C -0.150 4.150 12 C -0.158 4.158 13 C -0.075 4.075 14 N -0.259 5.259 15 C -0.036 4.036 16 C -0.018 4.018 17 C -0.153 4.153 18 C -0.114 4.114 19 C -0.162 4.162 20 C -0.013 4.013 21 N -0.204 5.204 22 H 0.248 0.752 23 C -0.085 4.085 24 C -0.221 4.221 25 C -0.105 4.105 26 C -0.055 4.055 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.041 0.959 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.056 0.944 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.133 0.867 39 H 0.185 0.815 40 H 0.164 0.836 41 H 0.085 0.915 42 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 22.249 -7.812 -0.140 23.581 hybrid contribution 0.472 0.121 0.464 0.673 sum 22.721 -7.691 0.324 23.989 Atomic orbital electron populations 1.69917 1.06372 1.26920 1.50895 1.25039 0.94630 0.98994 0.94264 0.86838 0.80198 0.83483 0.78916 1.20167 1.21898 1.18759 1.20978 0.89292 0.94488 1.50164 0.91153 1.19149 0.95675 0.94391 0.90633 0.94301 1.21855 0.92160 1.00631 1.00316 1.21686 0.98235 0.98613 0.97288 1.22460 1.00542 0.96422 0.88097 1.62067 1.10957 1.47388 1.05513 1.20998 0.89966 0.94247 0.98374 1.19061 0.94850 0.95363 0.92549 1.20548 0.94375 1.00914 0.99510 1.20775 0.93684 0.99281 0.97691 1.19933 0.99129 1.02855 0.94257 1.18227 0.93321 0.99727 0.90042 1.41737 1.08934 1.49609 1.20138 0.75197 1.21764 0.86902 1.01559 0.98250 1.21860 0.97930 1.06006 0.96341 1.19033 0.91826 1.03039 0.96644 1.22281 0.83408 0.98914 1.00860 0.92751 0.93177 0.93331 0.92272 0.93210 0.95907 0.89956 0.90182 0.94431 0.85880 0.85946 0.86737 0.81539 0.83625 0.91508 0.95892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.83 13.96 55.43 0.77 -27.06 16 2 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.88 22.15 27.02 -169.99 -4.59 17.56 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.26 -6.44 6.78 56.52 0.38 -6.06 16 7 C -0.51 -14.41 8.86 -34.44 -0.31 -14.72 16 8 H 0.07 2.15 8.06 -52.49 -0.42 1.73 16 9 C 0.02 0.50 1.95 -91.69 -0.18 0.32 16 10 H 0.04 0.98 5.25 -51.93 -0.27 0.71 16 11 C -0.11 -2.44 5.27 -26.61 -0.14 -2.58 16 12 C -0.12 -2.23 6.09 -26.65 -0.16 -2.40 16 13 C 0.05 0.90 4.01 -3.84 -0.02 0.89 16 14 N -0.53 -9.83 4.65 -236.11 -1.10 -10.93 16 15 C 0.09 1.43 5.09 -4.98 -0.03 1.41 16 16 C -0.02 -0.25 5.15 -104.69 -0.54 -0.79 16 17 C -0.13 -1.78 9.59 -39.95 -0.38 -2.16 16 18 C -0.10 -1.09 10.01 -39.54 -0.40 -1.49 16 19 C -0.14 -1.58 10.08 -39.43 -0.40 -1.98 16 20 C 0.09 1.15 7.28 -83.99 -0.61 0.54 16 21 N -0.60 -5.67 6.07 -10.65 -0.06 -5.73 16 22 H 0.41 2.52 8.96 -40.82 -0.37 2.15 16 23 C 0.04 0.39 11.81 -16.73 -0.20 0.19 16 24 C -0.20 -2.42 8.53 -37.67 -0.32 -2.74 16 25 C -0.10 -1.41 4.89 -105.14 -0.51 -1.92 16 26 C 0.07 1.51 4.73 -3.83 -0.02 1.50 16 27 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 28 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 32 H 0.02 0.39 7.26 -51.93 -0.38 0.01 16 33 H 0.08 1.35 4.14 -51.93 -0.21 1.14 16 34 H 0.08 1.18 7.83 -51.93 -0.41 0.78 16 35 H 0.04 0.57 8.12 -51.93 -0.42 0.15 16 36 H 0.12 1.50 8.01 -52.49 -0.42 1.08 16 37 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 38 H 0.11 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.17 1.01 8.06 -52.49 -0.42 0.58 16 40 H 0.15 1.78 6.54 -52.49 -0.34 1.44 16 41 H 0.07 1.40 8.01 -51.93 -0.42 0.99 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 326.88 15.07 4.93 4.93 Total: -1.00 -32.30 326.88 -10.55 -42.85 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -6.20 Total: 2.31 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: -4.30 Total: -23.93 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: -0.39 Total: -43.72 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.59 Total: 17.56 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.30 -10.55 -42.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597175106.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.988 kcal (2) G-P(sol) polarization free energy of solvation -32.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds