Wall clock time and date at job start Tue Mar 31 2020 06:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 120.00186 * 2 1 4 4 H 1.48506 * 109.47188 * 264.78427 * 3 2 1 5 5 H 1.48496 * 109.47096 * 24.78249 * 3 2 1 6 6 H 1.48500 * 109.47334 * 144.78270 * 3 2 1 7 7 C 1.37886 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99722 * 5.77312 * 7 2 1 9 9 C 1.50693 * 119.99913 * 185.76888 * 7 2 1 10 10 H 1.09002 * 109.53589 * 335.26855 * 9 7 2 11 11 C 1.53126 * 109.50250 * 95.36769 * 9 7 2 12 12 C 1.53115 * 109.15828 * 177.59368 * 11 9 7 13 13 C 1.53037 * 109.28123 * 302.34363 * 12 11 9 14 14 N 1.46845 * 109.52225 * 59.18123 * 13 12 11 15 15 C 1.46900 * 111.00116 * 174.16034 * 14 13 12 16 16 C 1.50696 * 109.47241 * 294.21467 * 15 14 13 17 17 C 1.36671 * 120.11510 * 259.97943 * 16 15 14 18 18 C 1.38782 * 120.53114 * 180.02562 * 17 16 15 19 19 C 1.37794 * 120.66301 * 0.02562 * 18 17 16 20 20 C 1.39083 * 119.77738 * 359.95612 * 19 18 17 21 21 N 1.37690 * 133.50671 * 179.72662 * 20 19 18 22 22 H 0.97001 * 125.06251 * 0.25307 * 21 20 19 23 23 C 1.36836 * 109.87299 * 179.97438 * 21 20 19 24 24 C 1.34235 * 109.93800 * 0.37570 * 23 21 20 25 25 C 1.39586 * 120.12156 * 79.99528 * 16 15 14 26 26 C 1.46849 * 111.20063 * 298.25970 * 14 13 12 27 27 H 0.97003 * 119.99946 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.52296 * 297.49768 * 11 9 7 29 29 H 1.08995 * 109.52074 * 57.62722 * 11 9 7 30 30 H 1.09000 * 109.50600 * 62.28843 * 12 11 9 31 31 H 1.09008 * 109.50233 * 182.36751 * 12 11 9 32 32 H 1.09002 * 109.46242 * 299.16476 * 13 12 11 33 33 H 1.08995 * 109.46386 * 179.19818 * 13 12 11 34 34 H 1.09003 * 109.47077 * 174.21287 * 15 14 13 35 35 H 1.09003 * 109.47013 * 54.20978 * 15 14 13 36 36 H 1.07997 * 119.73005 * 359.97438 * 17 16 15 37 37 H 1.08001 * 119.67148 * 179.97438 * 18 17 16 38 38 H 1.07999 * 120.11112 * 179.97438 * 19 18 17 39 39 H 1.07996 * 125.02998 * 180.18417 * 23 21 20 40 40 H 1.08000 * 126.50006 * 179.80748 * 24 23 21 41 41 H 1.08996 * 109.46223 * 181.75958 * 26 14 13 42 42 H 1.09004 * 109.45989 * 301.72443 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6069 1.9828 -1.3943 5 1 1.3958 2.6819 0.5869 6 1 3.4872 1.4745 0.8074 7 6 2.0045 -1.1941 -0.0005 8 1 1.4686 -2.1270 -0.0950 9 6 3.5057 -1.1974 0.1306 10 1 3.9042 -0.2446 -0.2179 11 6 3.8902 -1.4063 1.5981 12 6 5.4157 -1.4685 1.7139 13 6 5.9443 -2.5974 0.8260 14 7 5.5509 -2.3510 -0.5672 15 6 6.1575 -3.3401 -1.4682 16 6 7.6538 -3.1619 -1.4755 17 6 8.2590 -2.4867 -2.4981 18 6 9.6365 -2.3180 -2.5138 19 6 10.4185 -2.8279 -1.5003 20 6 9.8237 -3.5181 -0.4495 21 7 10.3161 -4.1348 0.6788 22 1 11.2527 -4.1756 0.9277 23 6 9.2868 -4.6760 1.3999 24 6 8.1202 -4.4437 0.7777 25 6 8.4268 -3.6861 -0.4381 26 6 4.0896 -2.3342 -0.7114 27 1 -0.4850 0.8401 0.0004 28 1 3.5131 -0.5760 2.1951 29 1 3.4582 -2.3399 1.9584 30 1 5.8442 -0.5200 1.3903 31 1 5.6945 -1.6591 2.7503 32 1 5.5261 -3.5473 1.1589 33 1 7.0314 -2.6351 0.8952 34 1 5.7697 -3.1984 -2.4771 35 1 5.9129 -4.3445 -1.1226 36 1 7.6606 -2.0820 -3.3009 37 1 10.1003 -1.7825 -3.3290 38 1 11.4897 -2.6918 -1.5217 39 1 9.3969 -5.2135 2.3301 40 1 7.1412 -4.7548 1.1110 41 1 3.8298 -2.1808 -1.7588 42 1 3.6802 -3.2854 -0.3713 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597175106.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:18 Heat of formation + Delta-G solvation = 38.048804 kcal Electronic energy + Delta-G solvation = -22438.917078 eV Core-core repulsion = 19382.897230 eV Total energy + Delta-G solvation = -3056.019849 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.19054 -39.88221 -37.90341 -35.64494 -34.17597 -32.62119 -31.86392 -30.52742 -29.78626 -27.01773 -26.80025 -23.90248 -23.31048 -22.64755 -22.46200 -21.00422 -20.31177 -18.96832 -18.43684 -17.17947 -16.86229 -16.32973 -16.18492 -15.72036 -15.51986 -15.11032 -15.02699 -14.75923 -14.58028 -14.33265 -14.06042 -13.72471 -13.59735 -13.28689 -12.90969 -12.78740 -12.72535 -12.43279 -12.33739 -12.23021 -11.81122 -11.78093 -11.72207 -11.28370 -11.02350 -10.82678 -10.61808 -10.36707 -9.14176 -9.04071 -8.49946 -8.28152 -6.30890 0.24399 0.78072 1.36699 1.37424 1.49930 1.88716 2.35996 2.37158 2.86295 3.08374 3.36842 3.78948 4.04818 4.08290 4.15815 4.21084 4.31737 4.35835 4.45252 4.46437 4.53427 4.62813 4.65929 4.76932 4.84201 4.87335 4.91562 5.01861 5.03217 5.12090 5.16211 5.22100 5.26160 5.29201 5.56961 5.63080 5.66651 5.75998 5.81400 5.84416 5.92760 6.21117 6.28576 6.34208 6.41683 6.76828 6.82053 7.35340 8.88879 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.025783 B = 0.004403 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.711006 B = 6357.245749 C = 6736.013920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.016 3.984 3 Si 0.942 3.058 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.250 1.250 7 C -0.514 4.514 8 H 0.030 0.970 9 C 0.020 3.980 10 H 0.032 0.968 11 C -0.109 4.109 12 C -0.113 4.113 13 C 0.058 3.942 14 N -0.540 5.540 15 C 0.097 3.903 16 C -0.045 4.045 17 C -0.143 4.143 18 C -0.104 4.104 19 C -0.134 4.134 20 C 0.077 3.923 21 N -0.587 5.587 22 H 0.430 0.570 23 C 0.067 3.933 24 C -0.237 4.237 25 C -0.122 4.122 26 C 0.083 3.917 27 H 0.265 0.735 28 H 0.037 0.963 29 H 0.042 0.958 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.025 0.975 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.035 0.965 36 H 0.124 0.876 37 H 0.148 0.852 38 H 0.144 0.856 39 H 0.207 0.793 40 H 0.139 0.861 41 H 0.059 0.941 42 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.190 -8.165 0.725 27.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.181 4.181 3 Si 0.766 3.234 4 H -0.193 1.193 5 H -0.214 1.214 6 H -0.174 1.174 7 C -0.553 4.553 8 H 0.049 0.951 9 C 0.000 4.000 10 H 0.050 0.950 11 C -0.147 4.147 12 C -0.151 4.151 13 C -0.069 4.069 14 N -0.265 5.265 15 C -0.030 4.030 16 C -0.046 4.046 17 C -0.163 4.163 18 C -0.123 4.123 19 C -0.154 4.154 20 C -0.030 4.030 21 N -0.192 5.192 22 H 0.269 0.731 23 C -0.059 4.059 24 C -0.261 4.261 25 C -0.127 4.127 26 C -0.045 4.045 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.044 0.956 33 H 0.117 0.883 34 H 0.098 0.902 35 H 0.054 0.946 36 H 0.142 0.858 37 H 0.166 0.834 38 H 0.162 0.838 39 H 0.224 0.776 40 H 0.157 0.843 41 H 0.078 0.922 42 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 26.321 -7.637 0.657 27.414 hybrid contribution -0.733 -0.076 0.223 0.770 sum 25.587 -7.712 0.879 26.739 Atomic orbital electron populations 1.70054 1.08162 1.28004 1.52782 1.25860 0.95351 1.02757 0.94089 0.85813 0.79233 0.78884 0.79445 1.19313 1.21379 1.17364 1.21238 0.91686 0.92987 1.49353 0.95121 1.19102 0.92871 0.95191 0.92796 0.94968 1.21725 0.94981 0.99816 0.98155 1.21644 0.95146 0.98918 0.99420 1.22470 1.01413 0.95912 0.87094 1.62015 1.08720 1.48951 1.06801 1.20957 0.91205 0.93293 0.97566 1.19002 0.93843 0.97676 0.94127 1.20740 0.95589 1.00698 0.99268 1.21068 0.92942 0.99583 0.98751 1.20316 1.00622 1.01204 0.93281 1.18442 0.92934 1.00419 0.91223 1.41785 1.09981 1.48369 1.19062 0.73057 1.22325 0.85871 0.99268 0.98454 1.21920 0.98918 1.08266 0.97044 1.19293 0.92919 1.03484 0.97030 1.21964 0.85601 0.97207 0.99700 0.92559 0.94369 0.93887 0.92808 0.90322 0.95647 0.88320 0.90168 0.94636 0.85775 0.83440 0.83796 0.77646 0.84325 0.92222 0.96828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.42 13.96 21.45 0.30 -60.13 16 2 C 0.02 0.98 5.47 84.66 0.46 1.44 16 3 Si 0.94 46.12 27.02 68.60 1.85 47.97 16 4 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 5 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 6 H -0.25 -11.60 6.78 99.48 0.67 -10.93 16 7 C -0.51 -30.11 8.86 25.60 0.23 -29.88 16 8 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 9 C 0.02 0.96 1.95 -11.49 -0.02 0.94 16 10 H 0.03 1.61 5.25 -2.39 -0.01 1.60 16 11 C -0.11 -4.72 5.27 30.67 0.16 -4.56 16 12 C -0.11 -4.01 6.09 30.65 0.19 -3.83 16 13 C 0.06 1.94 4.01 86.33 0.35 2.29 16 14 N -0.54 -19.75 4.65 -900.93 -4.19 -23.94 16 15 C 0.10 3.04 5.09 85.56 0.44 3.48 16 16 C -0.05 -1.30 5.15 -19.91 -0.10 -1.40 16 17 C -0.14 -3.66 9.59 22.03 0.21 -3.44 16 18 C -0.10 -2.15 10.01 22.29 0.22 -1.92 16 19 C -0.13 -2.56 10.08 22.37 0.23 -2.33 16 20 C 0.08 1.67 7.28 39.03 0.28 1.96 16 21 N -0.59 -8.82 6.07 -187.62 -1.14 -9.96 16 22 H 0.43 3.34 8.96 -92.71 -0.83 2.51 16 23 C 0.07 1.05 11.81 83.00 0.98 2.03 16 24 C -0.24 -5.37 8.53 23.51 0.20 -5.17 16 25 C -0.12 -3.22 4.89 -20.20 -0.10 -3.32 16 26 C 0.08 3.56 4.73 86.33 0.41 3.97 16 27 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 28 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 32 H 0.03 0.84 7.26 -2.39 -0.02 0.82 16 33 H 0.10 3.06 4.14 -2.39 -0.01 3.05 16 34 H 0.08 2.43 7.83 -2.39 -0.02 2.41 16 35 H 0.04 1.11 8.12 -2.39 -0.02 1.09 16 36 H 0.12 2.98 8.01 -2.91 -0.02 2.96 16 37 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 38 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 39 H 0.21 1.45 8.06 -2.91 -0.02 1.43 16 40 H 0.14 3.25 6.54 -2.91 -0.02 3.23 16 41 H 0.06 2.59 8.01 -2.39 -0.02 2.57 16 42 H 0.01 0.60 8.14 -2.38 -0.02 0.58 16 Total: -1.00 -71.91 326.88 1.11 -70.80 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 0.16 Total: 15.03 kcal Atomic # 6 Polarization: -43.90 SS G_CDS: 4.13 Total: -39.77 kcal Atomic # 7 Polarization: -88.99 SS G_CDS: -5.03 Total: -94.02 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 1.85 Total: 47.97 kcal Total: -71.91 1.11 -70.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597175106.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.844 kcal (2) G-P(sol) polarization free energy of solvation -71.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds