Wall clock time and date at job start Tue Mar 31 2020 06:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 119.99910 * 2 1 4 4 H 1.48500 * 109.47098 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47332 * 299.99951 * 3 2 1 6 6 H 1.48503 * 109.47168 * 60.00404 * 3 2 1 7 7 C 1.37881 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99603 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00451 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.50046 * 60.07443 * 9 7 2 11 11 C 1.53121 * 109.49907 * 300.00013 * 9 7 2 12 12 C 1.53121 * 109.15753 * 182.40386 * 11 9 7 13 13 C 1.53037 * 109.27888 * 57.65189 * 12 11 9 14 14 N 1.46852 * 109.52419 * 300.82069 * 13 12 11 15 15 C 1.46901 * 110.99853 * 185.83775 * 14 13 12 16 16 C 1.50703 * 109.47119 * 66.04692 * 15 14 13 17 17 C 1.36660 * 120.11979 * 260.00234 * 16 15 14 18 18 C 1.38787 * 120.52576 * 180.27778 * 17 16 15 19 19 C 1.37787 * 120.66752 * 359.47988 * 18 17 16 20 20 C 1.39085 * 119.77983 * 0.51062 * 19 18 17 21 21 N 1.37693 * 133.51430 * 179.74655 * 20 19 18 22 22 H 0.96999 * 125.06241 * 359.97438 * 21 20 19 23 23 C 1.36836 * 109.87051 * 180.02562 * 21 20 19 24 24 C 1.34231 * 109.94158 * 0.02562 * 23 21 20 25 25 C 1.39594 * 120.11501 * 80.02012 * 16 15 14 26 26 C 1.46846 * 111.19635 * 61.73949 * 14 13 12 27 27 H 0.96999 * 120.00250 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.52487 * 62.49963 * 11 9 7 29 29 H 1.08995 * 109.57440 * 302.33409 * 11 9 7 30 30 H 1.09002 * 109.50375 * 297.71407 * 12 11 9 31 31 H 1.08995 * 109.50688 * 177.59516 * 12 11 9 32 32 H 1.09003 * 109.46485 * 180.80595 * 13 12 11 33 33 H 1.08994 * 109.45965 * 60.83569 * 13 12 11 34 34 H 1.08992 * 109.47267 * 306.04688 * 15 14 13 35 35 H 1.09003 * 109.46826 * 186.04406 * 15 14 13 36 36 H 1.08002 * 119.73214 * 359.97438 * 17 16 15 37 37 H 1.08002 * 119.66455 * 179.74167 * 18 17 16 38 38 H 1.08006 * 120.11012 * 180.26093 * 19 18 17 39 39 H 1.07995 * 125.02445 * 179.97438 * 23 21 20 40 40 H 1.08001 * 126.50048 * 180.02562 * 24 23 21 41 41 H 1.08998 * 109.45959 * 58.27518 * 26 14 13 42 42 H 1.08998 * 109.45992 * 178.23812 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4993 0.0005 10 1 0.6255 -2.5583 -0.8902 11 6 0.3700 -2.5808 1.2502 12 6 -0.3457 -3.9342 1.2730 13 6 0.6944 -5.0564 1.2417 14 7 1.5111 -4.9348 0.0273 15 6 2.4287 -6.0742 -0.1063 16 6 1.6345 -7.3348 -0.3330 17 6 1.3972 -8.1918 0.7047 18 6 0.6718 -9.3578 0.5041 19 6 0.1691 -9.6674 -0.7409 20 6 0.3985 -8.8096 -1.8114 21 7 0.0446 -8.8380 -3.1418 22 1 -0.4727 -9.5404 -3.5659 23 6 0.5323 -7.7282 -3.7765 24 6 1.2033 -6.9596 -2.9042 25 6 1.1391 -7.6314 -1.6040 26 6 2.2448 -3.6629 0.0060 27 1 -0.4850 0.8400 -0.0004 28 1 -0.3679 -1.7789 1.2287 29 1 0.9899 -2.4816 2.1412 30 1 -0.9962 -4.0167 0.4023 31 1 -0.9415 -4.0156 2.1821 32 1 0.1877 -6.0215 1.2434 33 1 1.3358 -4.9816 2.1197 34 1 3.0179 -6.1750 0.8051 35 1 3.0946 -5.9071 -0.9529 36 1 1.7813 -7.9621 1.6876 37 1 0.4959 -10.0273 1.3332 38 1 -0.3978 -10.5753 -0.8859 39 1 0.3979 -7.5043 -4.8244 40 1 1.6958 -6.0229 -3.1198 41 1 2.8790 -3.5947 0.8899 42 1 2.8642 -3.6159 -0.8896 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597175107.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:22 Heat of formation + Delta-G solvation = 52.916937 kcal Electronic energy + Delta-G solvation = -22248.530882 eV Core-core repulsion = 19193.155764 eV Total energy + Delta-G solvation = -3055.375118 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.09128 -38.31682 -36.73013 -33.93589 -32.32988 -31.01910 -29.87910 -29.22569 -28.71572 -25.57567 -24.84479 -22.39456 -21.75848 -21.57622 -21.03657 -20.04057 -18.48369 -17.43634 -16.31042 -16.07510 -15.31259 -15.04042 -14.59210 -14.48962 -14.13791 -13.93610 -13.38450 -13.10119 -12.97024 -12.72708 -12.47160 -12.31513 -12.02502 -11.71513 -11.54775 -11.39706 -11.03747 -10.92313 -10.76359 -10.59592 -10.45981 -10.00590 -9.75785 -9.47223 -9.38838 -8.93958 -8.61780 -8.24669 -8.06916 -7.61830 -7.42945 -5.91798 -3.97776 1.24976 1.77917 2.90296 3.21968 3.33266 3.41254 3.45006 3.99581 4.47433 4.78043 4.84229 4.97464 5.12414 5.27336 5.36675 5.38223 5.54392 5.72694 5.75657 5.81976 5.91814 5.98604 6.02431 6.16722 6.21253 6.30624 6.38014 6.49685 6.59809 6.61059 6.79365 6.83754 6.83919 6.85834 6.99463 7.07714 7.30101 7.32188 7.49449 7.61149 7.78871 7.82476 7.93405 8.16663 8.25417 8.55270 9.06815 9.66234 11.14079 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.025543 B = 0.004058 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.921175 B = 6898.852187 C = 7350.185597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.053 0.947 9 C 0.056 3.944 10 H 0.034 0.966 11 C -0.110 4.110 12 C -0.116 4.116 13 C 0.063 3.937 14 N -0.527 5.527 15 C 0.092 3.908 16 C -0.013 4.013 17 C -0.150 4.150 18 C -0.098 4.098 19 C -0.141 4.141 20 C 0.092 3.908 21 N -0.601 5.601 22 H 0.411 0.589 23 C 0.034 3.966 24 C -0.178 4.178 25 C -0.086 4.086 26 C 0.068 3.932 27 H 0.258 0.742 28 H 0.089 0.911 29 H 0.028 0.972 30 H 0.059 0.941 31 H 0.044 0.956 32 H 0.061 0.939 33 H 0.020 0.980 34 H 0.033 0.967 35 H 0.078 0.922 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.114 0.886 39 H 0.167 0.833 40 H 0.148 0.852 41 H 0.018 0.982 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.291 -18.821 -3.033 19.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.551 4.551 8 H 0.072 0.928 9 C 0.037 3.963 10 H 0.052 0.948 11 C -0.148 4.148 12 C -0.154 4.154 13 C -0.065 4.065 14 N -0.252 5.252 15 C -0.036 4.036 16 C -0.014 4.014 17 C -0.170 4.170 18 C -0.117 4.117 19 C -0.162 4.162 20 C -0.015 4.015 21 N -0.205 5.205 22 H 0.247 0.753 23 C -0.091 4.091 24 C -0.203 4.203 25 C -0.092 4.092 26 C -0.059 4.059 27 H 0.068 0.932 28 H 0.108 0.892 29 H 0.047 0.953 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.038 0.962 34 H 0.051 0.949 35 H 0.097 0.903 36 H 0.135 0.865 37 H 0.138 0.862 38 H 0.132 0.868 39 H 0.184 0.816 40 H 0.166 0.834 41 H 0.036 0.964 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.219 -18.739 -3.528 19.069 hybrid contribution 0.658 0.613 0.513 1.035 sum 0.439 -18.126 -3.015 18.381 Atomic orbital electron populations 1.69910 1.05827 1.26096 1.50896 1.24931 0.94798 0.98889 0.95232 0.86592 0.80147 0.84078 0.77486 1.19873 1.21097 1.21154 1.21206 0.92844 0.90714 1.50377 0.92828 1.18653 0.92603 0.90203 0.94858 0.94780 1.21644 0.99998 0.94743 0.98410 1.21659 0.97242 0.96492 1.00008 1.22048 0.95604 0.98972 0.89902 1.62000 1.23533 1.01472 1.38152 1.21002 0.93431 0.88771 1.00404 1.19056 0.96293 0.94905 0.91188 1.20528 1.02531 0.95492 0.98452 1.20694 0.98101 0.97080 0.95819 1.19905 1.05246 0.99614 0.91399 1.18263 1.00757 0.97680 0.84838 1.41723 1.49591 1.22029 1.07173 0.75333 1.21770 1.00637 0.88317 0.98359 1.21786 1.06254 1.01254 0.90994 1.18961 1.01522 0.94792 0.93884 1.22317 0.96411 0.88478 0.98650 0.93192 0.89229 0.95272 0.92242 0.93759 0.92081 0.96194 0.94858 0.90314 0.86484 0.86152 0.86833 0.81599 0.83417 0.96422 0.92322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.65 11.35 55.43 0.63 -25.02 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.51 -14.19 8.56 -34.44 -0.29 -14.49 16 8 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 9 C 0.06 1.42 2.26 -91.69 -0.21 1.21 16 10 H 0.03 0.97 8.14 -51.93 -0.42 0.54 16 11 C -0.11 -2.67 5.02 -26.61 -0.13 -2.81 16 12 C -0.12 -2.40 6.09 -26.65 -0.16 -2.56 16 13 C 0.06 1.18 5.26 -3.83 -0.02 1.16 16 14 N -0.53 -10.14 4.65 -236.12 -1.10 -11.23 16 15 C 0.09 1.49 5.01 -4.97 -0.02 1.47 16 16 C -0.01 -0.21 4.59 -104.69 -0.48 -0.69 16 17 C -0.15 -2.04 8.49 -39.95 -0.34 -2.38 16 18 C -0.10 -1.17 10.01 -39.54 -0.40 -1.57 16 19 C -0.14 -1.68 10.08 -39.43 -0.40 -2.08 16 20 C 0.09 1.23 7.28 -83.99 -0.61 0.62 16 21 N -0.60 -6.48 6.07 -10.65 -0.06 -6.54 16 22 H 0.41 2.99 8.96 -40.82 -0.37 2.62 16 23 C 0.03 0.38 11.81 -16.73 -0.20 0.18 16 24 C -0.18 -2.54 10.94 -37.67 -0.41 -2.95 16 25 C -0.09 -1.33 6.16 -105.14 -0.65 -1.98 16 26 C 0.07 1.48 4.68 -3.84 -0.02 1.46 16 27 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.09 2.43 6.15 -51.93 -0.32 2.11 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.06 1.08 6.31 -51.93 -0.33 0.75 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.03 0.52 7.97 -51.93 -0.41 0.10 16 35 H 0.08 1.25 7.98 -51.93 -0.41 0.83 16 36 H 0.12 1.45 8.02 -52.49 -0.42 1.03 16 37 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 38 H 0.11 1.05 8.06 -52.48 -0.42 0.63 16 39 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.15 2.12 8.06 -52.49 -0.42 1.70 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 1.24 8.01 -51.93 -0.42 0.83 16 LS Contribution 335.01 15.07 5.05 5.05 Total: -1.00 -30.70 335.01 -11.39 -42.09 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -6.45 Total: 3.01 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: -4.44 Total: -23.76 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: -0.53 Total: -42.79 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.70 -11.39 -42.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597175107.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.011 kcal (2) G-P(sol) polarization free energy of solvation -30.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds