Wall clock time and date at job start Tue Mar 31 2020 06:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 119.99910 * 2 1 4 4 H 1.48500 * 109.47098 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47332 * 299.99951 * 3 2 1 6 6 H 1.48503 * 109.47168 * 60.00404 * 3 2 1 7 7 C 1.37881 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99603 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00451 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.50046 * 60.07443 * 9 7 2 11 11 C 1.53121 * 109.49907 * 300.00013 * 9 7 2 12 12 C 1.53121 * 109.15753 * 182.40386 * 11 9 7 13 13 C 1.53037 * 109.27888 * 57.65189 * 12 11 9 14 14 N 1.46852 * 109.52419 * 300.82069 * 13 12 11 15 15 C 1.46901 * 110.99853 * 185.83775 * 14 13 12 16 16 C 1.50703 * 109.47119 * 66.04692 * 15 14 13 17 17 C 1.36660 * 120.11979 * 260.00234 * 16 15 14 18 18 C 1.38787 * 120.52576 * 180.27778 * 17 16 15 19 19 C 1.37787 * 120.66752 * 359.47988 * 18 17 16 20 20 C 1.39085 * 119.77983 * 0.51062 * 19 18 17 21 21 N 1.37693 * 133.51430 * 179.74655 * 20 19 18 22 22 H 0.96999 * 125.06241 * 359.97438 * 21 20 19 23 23 C 1.36836 * 109.87051 * 180.02562 * 21 20 19 24 24 C 1.34231 * 109.94158 * 0.02562 * 23 21 20 25 25 C 1.39594 * 120.11501 * 80.02012 * 16 15 14 26 26 C 1.46846 * 111.19635 * 61.73949 * 14 13 12 27 27 H 0.96999 * 120.00250 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.52487 * 62.49963 * 11 9 7 29 29 H 1.08995 * 109.57440 * 302.33409 * 11 9 7 30 30 H 1.09002 * 109.50375 * 297.71407 * 12 11 9 31 31 H 1.08995 * 109.50688 * 177.59516 * 12 11 9 32 32 H 1.09003 * 109.46485 * 180.80595 * 13 12 11 33 33 H 1.08994 * 109.45965 * 60.83569 * 13 12 11 34 34 H 1.08992 * 109.47267 * 306.04688 * 15 14 13 35 35 H 1.09003 * 109.46826 * 186.04406 * 15 14 13 36 36 H 1.08002 * 119.73214 * 359.97438 * 17 16 15 37 37 H 1.08002 * 119.66455 * 179.74167 * 18 17 16 38 38 H 1.08006 * 120.11012 * 180.26093 * 19 18 17 39 39 H 1.07995 * 125.02445 * 179.97438 * 23 21 20 40 40 H 1.08001 * 126.50048 * 180.02562 * 24 23 21 41 41 H 1.08998 * 109.45959 * 58.27518 * 26 14 13 42 42 H 1.08998 * 109.45992 * 178.23812 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4993 0.0005 10 1 0.6255 -2.5583 -0.8902 11 6 0.3700 -2.5808 1.2502 12 6 -0.3457 -3.9342 1.2730 13 6 0.6944 -5.0564 1.2417 14 7 1.5111 -4.9348 0.0273 15 6 2.4287 -6.0742 -0.1063 16 6 1.6345 -7.3348 -0.3330 17 6 1.3972 -8.1918 0.7047 18 6 0.6718 -9.3578 0.5041 19 6 0.1691 -9.6674 -0.7409 20 6 0.3985 -8.8096 -1.8114 21 7 0.0446 -8.8380 -3.1418 22 1 -0.4727 -9.5404 -3.5659 23 6 0.5323 -7.7282 -3.7765 24 6 1.2033 -6.9596 -2.9042 25 6 1.1391 -7.6314 -1.6040 26 6 2.2448 -3.6629 0.0060 27 1 -0.4850 0.8400 -0.0004 28 1 -0.3679 -1.7789 1.2287 29 1 0.9899 -2.4816 2.1412 30 1 -0.9962 -4.0167 0.4023 31 1 -0.9415 -4.0156 2.1821 32 1 0.1877 -6.0215 1.2434 33 1 1.3358 -4.9816 2.1197 34 1 3.0179 -6.1750 0.8051 35 1 3.0946 -5.9071 -0.9529 36 1 1.7813 -7.9621 1.6876 37 1 0.4959 -10.0273 1.3332 38 1 -0.3978 -10.5753 -0.8859 39 1 0.3979 -7.5043 -4.8244 40 1 1.6958 -6.0229 -3.1198 41 1 2.8790 -3.5947 0.8899 42 1 2.8642 -3.6159 -0.8896 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597175107.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:21 Heat of formation + Delta-G solvation = 35.441756 kcal Electronic energy + Delta-G solvation = -22249.288663 eV Core-core repulsion = 19193.155764 eV Total energy + Delta-G solvation = -3056.132899 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.04500 -39.86890 -37.85417 -35.64007 -33.96606 -32.37565 -31.65878 -30.35005 -29.73904 -26.91526 -26.85943 -23.81197 -23.28066 -22.68569 -22.37831 -21.08463 -20.31471 -18.56174 -18.23188 -17.06148 -16.75249 -16.38980 -16.19753 -15.83247 -15.30695 -15.18901 -14.94955 -14.67913 -14.38531 -14.17765 -13.89481 -13.67314 -13.35874 -13.27316 -12.87448 -12.82101 -12.59957 -12.50358 -12.35613 -12.23806 -11.80251 -11.74582 -11.63178 -11.35227 -10.85245 -10.64870 -10.43832 -10.36280 -9.10143 -9.01477 -8.47769 -8.05926 -6.20345 0.27007 0.79062 1.41437 1.42852 1.54554 1.93858 2.38326 2.44385 2.90567 3.20830 3.37993 3.79988 4.11683 4.14392 4.23043 4.26462 4.34313 4.41060 4.45538 4.55648 4.61491 4.68243 4.68739 4.78702 4.88097 4.91825 4.99877 5.05268 5.11818 5.19089 5.20658 5.30374 5.40030 5.53306 5.64425 5.65299 5.79496 5.87529 5.97483 5.99353 6.15001 6.23906 6.33164 6.40541 6.49443 6.84897 6.92581 7.47519 8.98950 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.025543 B = 0.004058 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.921175 B = 6898.852187 C = 7350.185597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.014 3.986 3 Si 0.955 3.045 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.052 0.948 9 C 0.055 3.945 10 H -0.006 1.006 11 C -0.102 4.102 12 C -0.109 4.109 13 C 0.071 3.929 14 N -0.536 5.536 15 C 0.098 3.902 16 C -0.042 4.042 17 C -0.152 4.152 18 C -0.103 4.103 19 C -0.134 4.134 20 C 0.075 3.925 21 N -0.588 5.588 22 H 0.429 0.571 23 C 0.059 3.941 24 C -0.227 4.227 25 C -0.115 4.115 26 C 0.083 3.917 27 H 0.260 0.740 28 H 0.057 0.943 29 H 0.024 0.976 30 H 0.043 0.957 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.026 0.974 34 H 0.042 0.958 35 H 0.073 0.927 36 H 0.127 0.873 37 H 0.151 0.849 38 H 0.145 0.855 39 H 0.204 0.796 40 H 0.132 0.868 41 H 0.016 0.984 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.130 -20.940 -2.885 21.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.185 4.185 3 Si 0.781 3.219 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.573 4.573 8 H 0.070 0.930 9 C 0.036 3.964 10 H 0.012 0.988 11 C -0.140 4.140 12 C -0.147 4.147 13 C -0.057 4.057 14 N -0.261 5.261 15 C -0.029 4.029 16 C -0.043 4.043 17 C -0.172 4.172 18 C -0.122 4.122 19 C -0.155 4.155 20 C -0.032 4.032 21 N -0.193 5.193 22 H 0.269 0.731 23 C -0.067 4.067 24 C -0.252 4.252 25 C -0.120 4.120 26 C -0.045 4.045 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.042 0.958 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.045 0.955 34 H 0.060 0.940 35 H 0.092 0.908 36 H 0.145 0.855 37 H 0.169 0.831 38 H 0.162 0.838 39 H 0.220 0.780 40 H 0.150 0.850 41 H 0.034 0.966 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.385 -20.898 -3.385 21.174 hybrid contribution 0.663 1.201 0.401 1.430 sum 0.278 -19.696 -2.984 19.923 Atomic orbital electron populations 1.70055 1.07232 1.26958 1.51351 1.25726 0.95636 1.02335 0.94767 0.85552 0.79084 0.79698 0.77583 1.19123 1.20626 1.20598 1.21555 0.92995 0.92117 1.50648 0.92995 1.18556 0.92907 0.91293 0.93599 0.98778 1.21448 0.99097 0.95993 0.97468 1.21566 0.97524 0.95101 1.00472 1.21973 0.95099 0.98747 0.89885 1.61908 1.24203 1.01323 1.38633 1.20948 0.93148 0.88285 1.00507 1.19017 0.98047 0.95040 0.92159 1.20747 1.02311 0.95792 0.98324 1.21056 0.97353 0.96852 0.96921 1.20320 1.04313 1.00059 0.90796 1.18519 1.01020 0.97511 0.86198 1.41746 1.48954 1.22211 1.06405 0.73111 1.22252 0.97905 0.87175 0.99394 1.21838 1.09199 1.02129 0.92060 1.19276 1.02423 0.96083 0.94214 1.21987 0.95326 0.88760 0.98412 0.93109 0.92396 0.95757 0.93774 0.91389 0.90294 0.95533 0.94012 0.90833 0.85534 0.83119 0.83754 0.77976 0.85043 0.96606 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.49 11.35 21.45 0.24 -54.24 16 2 C 0.01 0.79 5.30 84.66 0.45 1.24 16 3 Si 0.96 44.54 29.54 68.60 2.03 46.57 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 7 C -0.53 -30.49 8.56 25.60 0.22 -30.27 16 8 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 9 C 0.06 2.93 2.26 -11.49 -0.03 2.91 16 10 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 11 C -0.10 -5.11 5.02 30.68 0.15 -4.96 16 12 C -0.11 -4.52 6.09 30.65 0.19 -4.33 16 13 C 0.07 2.61 5.26 86.32 0.45 3.06 16 14 N -0.54 -20.93 4.65 -900.95 -4.19 -25.11 16 15 C 0.10 3.22 5.01 85.56 0.43 3.65 16 16 C -0.04 -1.26 4.59 -19.91 -0.09 -1.35 16 17 C -0.15 -3.85 8.49 22.03 0.19 -3.67 16 18 C -0.10 -2.15 10.01 22.29 0.22 -1.92 16 19 C -0.13 -2.78 10.08 22.37 0.23 -2.56 16 20 C 0.07 1.86 7.28 39.03 0.28 2.15 16 21 N -0.59 -11.20 6.07 -187.61 -1.14 -12.34 16 22 H 0.43 4.83 8.96 -92.71 -0.83 4.00 16 23 C 0.06 1.23 11.81 83.00 0.98 2.21 16 24 C -0.23 -6.58 10.94 23.51 0.26 -6.32 16 25 C -0.11 -3.49 6.16 -20.20 -0.12 -3.62 16 26 C 0.08 3.69 4.68 86.32 0.40 4.09 16 27 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 28 H 0.06 3.27 6.15 -2.39 -0.01 3.25 16 29 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.08 2.66 6.31 -2.39 -0.02 2.65 16 33 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.04 1.28 7.97 -2.39 -0.02 1.26 16 35 H 0.07 2.42 7.98 -2.39 -0.02 2.41 16 36 H 0.13 2.86 8.02 -2.91 -0.02 2.84 16 37 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 38 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 39 H 0.20 2.55 8.06 -2.91 -0.02 2.53 16 40 H 0.13 4.07 8.06 -2.91 -0.02 4.04 16 41 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.06 2.49 8.01 -2.39 -0.02 2.47 16 Total: -1.00 -68.51 335.01 1.33 -67.17 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 0.18 Total: 17.63 kcal Atomic # 6 Polarization: -43.89 SS G_CDS: 4.21 Total: -39.68 kcal Atomic # 7 Polarization: -86.61 SS G_CDS: -5.08 Total: -91.69 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -68.51 1.33 -67.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597175107.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.616 kcal (2) G-P(sol) polarization free energy of solvation -68.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds