Wall clock time and date at job start Tue Mar 31 2020 06:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99777 * 2 1 4 4 H 1.48494 * 109.47041 * 269.99816 * 3 2 1 5 5 H 1.48495 * 109.47270 * 30.00127 * 3 2 1 6 6 H 1.48502 * 109.47059 * 150.00154 * 3 2 1 7 7 C 1.37876 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99533 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00395 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.49949 * 60.07263 * 9 7 2 11 11 C 1.53122 * 109.49886 * 299.99739 * 9 7 2 12 12 C 1.53122 * 109.15909 * 182.36203 * 11 9 7 13 13 C 1.53037 * 109.27467 * 57.65419 * 12 11 9 14 14 N 1.46846 * 109.52804 * 300.81701 * 13 12 11 15 15 C 1.46899 * 111.00582 * 185.84203 * 14 13 12 16 16 C 1.50701 * 109.47198 * 66.04791 * 15 14 13 17 17 C 1.34240 * 125.03480 * 94.99744 * 16 15 14 18 18 C 1.46487 * 106.99511 * 180.02562 * 17 16 15 19 19 C 1.39630 * 134.03338 * 179.97438 * 18 17 16 20 20 C 1.36619 * 119.76480 * 180.02562 * 19 18 17 21 21 C 1.38833 * 120.52952 * 359.74992 * 20 19 18 22 22 C 1.37745 * 120.66514 * 0.51097 * 21 20 19 23 23 C 1.39129 * 119.77529 * 359.49036 * 22 21 20 24 24 N 1.36823 * 125.03202 * 275.00584 * 16 15 14 25 25 H 0.96999 * 125.06916 * 359.97438 * 24 16 15 26 26 C 1.46851 * 111.19574 * 61.74226 * 14 13 12 27 27 H 0.96995 * 120.00357 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.52378 * 62.45920 * 11 9 7 29 29 H 1.08996 * 109.57282 * 302.29798 * 11 9 7 30 30 H 1.08999 * 109.50521 * 297.71567 * 12 11 9 31 31 H 1.08997 * 109.50517 * 177.59070 * 12 11 9 32 32 H 1.09009 * 109.46430 * 180.80736 * 13 12 11 33 33 H 1.08995 * 109.46609 * 60.83384 * 13 12 11 34 34 H 1.09001 * 109.46944 * 306.04461 * 15 14 13 35 35 H 1.08999 * 109.47018 * 186.04949 * 15 14 13 36 36 H 1.08002 * 126.49739 * 359.97233 * 17 16 15 37 37 H 1.08001 * 120.11461 * 0.04785 * 19 18 17 38 38 H 1.08006 * 119.73610 * 179.97438 * 20 19 18 39 39 H 1.08003 * 119.66516 * 180.25718 * 21 20 19 40 40 H 1.08002 * 120.11529 * 179.77322 * 22 21 20 41 41 H 1.09005 * 109.46167 * 58.27659 * 26 14 13 42 42 H 1.08997 * 109.46444 * 178.24138 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6256 -2.5582 -0.8902 11 6 0.3701 -2.5808 1.2503 12 6 -0.3464 -3.9338 1.2726 13 6 0.6931 -5.0565 1.2407 14 7 1.5098 -4.9350 0.0264 15 6 2.4267 -6.0748 -0.1078 16 6 1.6319 -7.3348 -0.3351 17 6 1.3539 -7.8644 -1.5369 18 6 0.5657 -9.0760 -1.2989 19 6 -0.0091 -10.0389 -2.1309 20 6 -0.7043 -11.0800 -1.5839 21 6 -0.8395 -11.1916 -0.2066 22 6 -0.2850 -10.2502 0.6323 23 6 0.4271 -9.1816 0.0969 24 7 1.0866 -8.1084 0.6530 25 1 1.1544 -7.9278 1.6036 26 6 2.2443 -3.6635 0.0055 27 1 -0.4850 0.8400 0.0004 28 1 -0.3674 -1.7784 1.2291 29 1 0.9902 -2.4822 2.1412 30 1 -0.9970 -4.0155 0.4019 31 1 -0.9421 -4.0153 2.1817 32 1 0.1859 -6.0214 1.2420 33 1 1.3348 -4.9825 2.1187 34 1 3.0160 -6.1763 0.8035 35 1 3.0927 -5.9076 -0.9544 36 1 1.6536 -7.4711 -2.4971 37 1 0.0957 -9.9609 -3.2029 38 1 -1.1491 -11.8243 -2.2278 39 1 -1.3885 -12.0226 0.2110 40 1 -0.3988 -10.3437 1.7022 41 1 2.8786 -3.5959 0.8894 42 1 2.8636 -3.6164 -0.8902 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597178453.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:22 Heat of formation + Delta-G solvation = 51.483385 kcal Electronic energy + Delta-G solvation = -21818.856868 eV Core-core repulsion = 18763.419587 eV Total energy + Delta-G solvation = -3055.437281 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.26490 -38.34202 -36.84533 -33.84519 -32.16679 -31.68253 -30.05340 -29.29784 -29.03693 -25.84174 -24.98572 -22.62334 -21.99362 -21.46126 -21.22293 -20.01682 -18.66733 -17.63106 -16.48674 -16.15526 -15.39409 -15.27738 -14.58370 -14.34883 -14.08366 -14.01300 -13.84041 -13.42681 -13.11062 -12.90600 -12.65539 -12.38753 -12.07439 -11.85788 -11.64202 -11.52434 -11.29439 -10.97306 -10.85638 -10.72555 -10.67896 -10.15887 -9.87825 -9.69025 -9.51272 -9.11941 -8.74079 -8.32931 -8.14374 -7.78490 -7.61391 -5.99093 -4.05709 1.14017 1.65264 2.75295 3.13918 3.29745 3.36638 3.39068 3.94438 4.37983 4.56371 4.69052 4.80815 5.00902 5.13830 5.27110 5.30935 5.40937 5.46007 5.52991 5.61572 5.71199 5.74125 5.92148 5.97874 6.07054 6.09242 6.17808 6.32170 6.43807 6.45813 6.60396 6.64820 6.69759 6.80603 6.88615 6.92136 7.17012 7.21166 7.33279 7.52773 7.58575 7.69342 7.74976 8.05182 8.14837 8.44814 8.98282 9.58774 11.06843 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.038194 B = 0.003248 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.932456 B = 8618.789519 C = 8775.317207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.516 4.516 8 H 0.054 0.946 9 C 0.056 3.944 10 H 0.036 0.964 11 C -0.111 4.111 12 C -0.116 4.116 13 C 0.060 3.940 14 N -0.531 5.531 15 C 0.111 3.889 16 C 0.103 3.897 17 C -0.189 4.189 18 C -0.105 4.105 19 C -0.071 4.071 20 C -0.152 4.152 21 C -0.106 4.106 22 C -0.131 4.131 23 C 0.096 3.904 24 N -0.592 5.592 25 H 0.411 0.589 26 C 0.068 3.932 27 H 0.260 0.740 28 H 0.092 0.908 29 H 0.029 0.971 30 H 0.061 0.939 31 H 0.045 0.955 32 H 0.055 0.945 33 H 0.022 0.978 34 H 0.037 0.963 35 H 0.099 0.901 36 H 0.146 0.854 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.116 0.884 41 H 0.020 0.980 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.664 -19.162 0.912 19.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.554 4.554 8 H 0.072 0.928 9 C 0.037 3.963 10 H 0.054 0.946 11 C -0.149 4.149 12 C -0.154 4.154 13 C -0.068 4.068 14 N -0.256 5.256 15 C -0.018 4.018 16 C -0.005 4.005 17 C -0.214 4.214 18 C -0.110 4.110 19 C -0.090 4.090 20 C -0.172 4.172 21 C -0.125 4.125 22 C -0.152 4.152 23 C -0.011 4.011 24 N -0.196 5.196 25 H 0.248 0.752 26 C -0.059 4.059 27 H 0.070 0.930 28 H 0.110 0.890 29 H 0.048 0.952 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.040 0.960 34 H 0.055 0.945 35 H 0.117 0.883 36 H 0.164 0.836 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.139 0.861 40 H 0.134 0.866 41 H 0.039 0.961 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.242 -18.959 0.632 18.971 hybrid contribution 0.960 1.004 1.257 1.874 sum 1.201 -17.955 1.889 18.094 Atomic orbital electron populations 1.69888 1.05849 1.26370 1.50523 1.24936 0.94829 0.98976 0.95097 0.86620 0.79808 0.83598 0.78103 1.20667 1.21285 1.20037 1.21129 0.92815 0.90612 1.50886 0.92810 1.18661 0.92579 0.90165 0.94921 0.94634 1.21662 1.00076 0.94663 0.98466 1.21659 0.97113 0.96365 1.00269 1.22114 0.95782 0.99003 0.89939 1.62050 1.23601 1.01707 1.38202 1.20751 0.92828 0.86586 1.01642 1.20284 0.98938 0.93564 0.87700 1.21438 1.06182 0.96806 0.97010 1.19249 1.02413 0.97249 0.92084 1.20275 0.96561 0.93134 0.99024 1.20572 1.02303 0.99325 0.94963 1.20729 1.00002 0.98369 0.93397 1.20001 1.01465 0.94305 0.99393 1.18240 0.98921 0.90997 0.92955 1.41894 1.47460 1.21699 1.08533 0.75207 1.22359 0.96513 0.88014 0.98987 0.93022 0.89005 0.95191 0.91990 0.93599 0.92626 0.96031 0.94523 0.88313 0.83585 0.86209 0.86366 0.86129 0.86595 0.96138 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.17 11.35 55.43 0.63 -24.54 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 21.06 29.54 -169.99 -5.02 16.03 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -13.91 8.57 -34.44 -0.29 -14.21 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.06 1.37 2.26 -91.69 -0.21 1.16 16 10 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 11 C -0.11 -2.59 5.02 -26.61 -0.13 -2.72 16 12 C -0.12 -2.28 6.09 -26.65 -0.16 -2.44 16 13 C 0.06 1.03 5.30 -3.83 -0.02 1.01 16 14 N -0.53 -9.48 4.65 -236.11 -1.10 -10.58 16 15 C 0.11 1.59 5.48 -4.98 -0.03 1.56 16 16 C 0.10 1.45 5.83 -81.77 -0.48 0.97 16 17 C -0.19 -2.70 10.95 -37.67 -0.41 -3.11 16 18 C -0.11 -1.48 6.37 -105.14 -0.67 -2.15 16 19 C -0.07 -0.86 10.05 -39.65 -0.40 -1.26 16 20 C -0.15 -1.62 9.97 -39.95 -0.40 -2.02 16 21 C -0.11 -1.10 10.01 -39.54 -0.40 -1.49 16 22 C -0.13 -1.49 10.08 -39.43 -0.40 -1.89 16 23 C 0.10 1.29 7.28 -83.99 -0.61 0.68 16 24 N -0.59 -7.56 5.06 -6.95 -0.04 -7.59 16 25 H 0.41 4.39 8.58 -40.82 -0.35 4.04 16 26 C 0.07 1.38 4.68 -3.83 -0.02 1.37 16 27 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.09 2.42 6.15 -51.93 -0.32 2.10 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.88 5.94 -51.92 -0.31 0.57 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.04 0.49 8.12 -51.93 -0.42 0.07 16 35 H 0.10 1.32 7.98 -51.93 -0.41 0.91 16 36 H 0.15 1.90 8.06 -52.49 -0.42 1.48 16 37 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 38 H 0.12 0.97 8.06 -52.48 -0.42 0.54 16 39 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 40 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 1.25 8.01 -51.93 -0.42 0.84 16 LS Contribution 335.14 15.07 5.05 5.05 Total: -1.00 -29.27 335.14 -11.61 -40.88 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -6.42 Total: 3.67 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: -4.72 Total: -22.92 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: -0.50 Total: -42.71 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.27 -11.61 -40.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597178453.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.368 kcal (2) G-P(sol) polarization free energy of solvation -29.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds