Wall clock time and date at job start Tue Mar 31 2020 06:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99777 * 2 1 4 4 H 1.48494 * 109.47041 * 269.99816 * 3 2 1 5 5 H 1.48495 * 109.47270 * 30.00127 * 3 2 1 6 6 H 1.48502 * 109.47059 * 150.00154 * 3 2 1 7 7 C 1.37876 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99533 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00395 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.49949 * 60.07263 * 9 7 2 11 11 C 1.53122 * 109.49886 * 299.99739 * 9 7 2 12 12 C 1.53122 * 109.15909 * 182.36203 * 11 9 7 13 13 C 1.53037 * 109.27467 * 57.65419 * 12 11 9 14 14 N 1.46846 * 109.52804 * 300.81701 * 13 12 11 15 15 C 1.46899 * 111.00582 * 185.84203 * 14 13 12 16 16 C 1.50701 * 109.47198 * 66.04791 * 15 14 13 17 17 C 1.34240 * 125.03480 * 94.99744 * 16 15 14 18 18 C 1.46487 * 106.99511 * 180.02562 * 17 16 15 19 19 C 1.39630 * 134.03338 * 179.97438 * 18 17 16 20 20 C 1.36619 * 119.76480 * 180.02562 * 19 18 17 21 21 C 1.38833 * 120.52952 * 359.74992 * 20 19 18 22 22 C 1.37745 * 120.66514 * 0.51097 * 21 20 19 23 23 C 1.39129 * 119.77529 * 359.49036 * 22 21 20 24 24 N 1.36823 * 125.03202 * 275.00584 * 16 15 14 25 25 H 0.96999 * 125.06916 * 359.97438 * 24 16 15 26 26 C 1.46851 * 111.19574 * 61.74226 * 14 13 12 27 27 H 0.96995 * 120.00357 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.52378 * 62.45920 * 11 9 7 29 29 H 1.08996 * 109.57282 * 302.29798 * 11 9 7 30 30 H 1.08999 * 109.50521 * 297.71567 * 12 11 9 31 31 H 1.08997 * 109.50517 * 177.59070 * 12 11 9 32 32 H 1.09009 * 109.46430 * 180.80736 * 13 12 11 33 33 H 1.08995 * 109.46609 * 60.83384 * 13 12 11 34 34 H 1.09001 * 109.46944 * 306.04461 * 15 14 13 35 35 H 1.08999 * 109.47018 * 186.04949 * 15 14 13 36 36 H 1.08002 * 126.49739 * 359.97233 * 17 16 15 37 37 H 1.08001 * 120.11461 * 0.04785 * 19 18 17 38 38 H 1.08006 * 119.73610 * 179.97438 * 20 19 18 39 39 H 1.08003 * 119.66516 * 180.25718 * 21 20 19 40 40 H 1.08002 * 120.11529 * 179.77322 * 22 21 20 41 41 H 1.09005 * 109.46167 * 58.27659 * 26 14 13 42 42 H 1.08997 * 109.46444 * 178.24138 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6256 -2.5582 -0.8902 11 6 0.3701 -2.5808 1.2503 12 6 -0.3464 -3.9338 1.2726 13 6 0.6931 -5.0565 1.2407 14 7 1.5098 -4.9350 0.0264 15 6 2.4267 -6.0748 -0.1078 16 6 1.6319 -7.3348 -0.3351 17 6 1.3539 -7.8644 -1.5369 18 6 0.5657 -9.0760 -1.2989 19 6 -0.0091 -10.0389 -2.1309 20 6 -0.7043 -11.0800 -1.5839 21 6 -0.8395 -11.1916 -0.2066 22 6 -0.2850 -10.2502 0.6323 23 6 0.4271 -9.1816 0.0969 24 7 1.0866 -8.1084 0.6530 25 1 1.1544 -7.9278 1.6036 26 6 2.2443 -3.6635 0.0055 27 1 -0.4850 0.8400 0.0004 28 1 -0.3674 -1.7784 1.2291 29 1 0.9902 -2.4822 2.1412 30 1 -0.9970 -4.0155 0.4019 31 1 -0.9421 -4.0153 2.1817 32 1 0.1859 -6.0214 1.2420 33 1 1.3348 -4.9825 2.1187 34 1 3.0160 -6.1763 0.8035 35 1 3.0927 -5.9076 -0.9544 36 1 1.6536 -7.4711 -2.4971 37 1 0.0957 -9.9609 -3.2029 38 1 -1.1491 -11.8243 -2.2278 39 1 -1.3885 -12.0226 0.2110 40 1 -0.3988 -10.3437 1.7022 41 1 2.8786 -3.5959 0.8894 42 1 2.8636 -3.6164 -0.8902 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597178453.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:21 Heat of formation + Delta-G solvation = 35.743392 kcal Electronic energy + Delta-G solvation = -21819.539405 eV Core-core repulsion = 18763.419587 eV Total energy + Delta-G solvation = -3056.119819 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.22452 -39.81299 -37.83544 -35.59147 -33.72665 -32.77127 -31.75804 -30.39915 -30.06556 -27.04307 -26.91881 -23.93967 -23.41612 -22.77830 -22.22753 -21.08627 -20.39916 -18.62827 -18.35855 -17.14224 -16.90447 -16.50988 -16.14655 -15.66666 -15.20127 -15.15854 -14.95100 -14.74159 -14.53094 -14.43003 -14.09189 -13.78037 -13.48805 -13.18263 -12.92723 -12.83192 -12.62560 -12.46977 -12.41747 -12.33449 -11.85465 -11.75472 -11.71036 -11.40751 -10.95867 -10.67674 -10.58886 -10.38701 -9.24513 -9.01093 -8.58408 -8.07530 -6.21952 0.23610 0.76810 1.42017 1.42614 1.52441 1.71674 2.20002 2.43472 3.05238 3.17665 3.19720 3.66216 3.90960 4.08964 4.13059 4.22860 4.29621 4.32058 4.39096 4.50983 4.56443 4.59882 4.61981 4.71022 4.72026 4.84208 4.94579 5.01980 5.07862 5.13543 5.15562 5.22986 5.34824 5.49464 5.61090 5.63447 5.75149 5.88454 5.89993 5.94815 6.10315 6.19120 6.23821 6.30925 6.43810 6.67166 6.91174 7.46223 8.97064 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.038194 B = 0.003248 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.932456 B = 8618.789519 C = 8775.317207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.013 3.987 3 Si 0.955 3.045 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.534 4.534 8 H 0.055 0.945 9 C 0.053 3.947 10 H -0.006 1.006 11 C -0.103 4.103 12 C -0.110 4.110 13 C 0.067 3.933 14 N -0.544 5.544 15 C 0.116 3.884 16 C 0.094 3.906 17 C -0.205 4.205 18 C -0.135 4.135 19 C -0.088 4.088 20 C -0.152 4.152 21 C -0.104 4.104 22 C -0.140 4.140 23 C 0.081 3.919 24 N -0.588 5.588 25 H 0.420 0.580 26 C 0.082 3.918 27 H 0.260 0.740 28 H 0.057 0.943 29 H 0.026 0.974 30 H 0.043 0.957 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.033 0.967 34 H 0.054 0.946 35 H 0.106 0.894 36 H 0.148 0.852 37 H 0.131 0.869 38 H 0.145 0.855 39 H 0.151 0.849 40 H 0.137 0.863 41 H 0.023 0.977 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.055 -21.094 1.719 21.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.186 4.186 3 Si 0.780 3.220 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.573 4.573 8 H 0.073 0.927 9 C 0.034 3.966 10 H 0.013 0.987 11 C -0.141 4.141 12 C -0.148 4.148 13 C -0.061 4.061 14 N -0.269 5.269 15 C -0.012 4.012 16 C -0.014 4.014 17 C -0.231 4.231 18 C -0.140 4.140 19 C -0.106 4.106 20 C -0.171 4.171 21 C -0.123 4.123 22 C -0.160 4.160 23 C -0.027 4.027 24 N -0.192 5.192 25 H 0.258 0.742 26 C -0.045 4.045 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.045 0.955 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.125 0.875 36 H 0.166 0.834 37 H 0.148 0.852 38 H 0.162 0.838 39 H 0.169 0.831 40 H 0.155 0.845 41 H 0.041 0.959 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.642 -20.911 1.449 20.971 hybrid contribution 0.770 1.499 0.960 1.940 sum 1.412 -19.412 2.409 19.612 Atomic orbital electron populations 1.70042 1.07250 1.27037 1.51284 1.25736 0.95631 1.02401 0.94843 0.85610 0.78748 0.79424 0.78186 1.20233 1.21071 1.19134 1.21525 0.93104 0.92001 1.50656 0.92696 1.18580 0.93004 0.91431 0.93598 0.98749 1.21458 0.99163 0.95881 0.97624 1.21564 0.97521 0.95173 1.00549 1.22044 0.95259 0.98639 0.90170 1.61924 1.24451 1.01732 1.38809 1.20735 0.92406 0.85250 1.02805 1.20151 0.99581 0.93637 0.88054 1.21655 1.06587 0.97458 0.97409 1.19538 1.03471 0.97868 0.93097 1.20555 0.96970 0.93408 0.99699 1.20959 1.01309 0.99134 0.95728 1.21176 0.99126 0.98675 0.93297 1.20357 1.01046 0.93822 1.00815 1.18559 0.99485 0.91681 0.92953 1.41828 1.47192 1.21444 1.08785 0.74157 1.22012 0.95307 0.87991 0.99190 0.93131 0.92478 0.95523 0.93781 0.91405 0.90668 0.94835 0.92828 0.87537 0.83416 0.85150 0.83766 0.83113 0.84499 0.95877 0.91693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.56 11.35 21.45 0.24 -53.31 16 2 C 0.01 0.70 5.30 84.65 0.45 1.15 16 3 Si 0.95 43.60 29.54 68.60 2.03 45.62 16 4 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.53 -29.37 8.57 25.60 0.22 -29.15 16 8 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 9 C 0.05 2.67 2.26 -11.49 -0.03 2.64 16 10 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 11 C -0.10 -4.94 5.02 30.68 0.15 -4.78 16 12 C -0.11 -4.31 6.09 30.65 0.19 -4.12 16 13 C 0.07 2.20 5.30 86.33 0.46 2.66 16 14 N -0.54 -19.03 4.65 -900.92 -4.19 -23.21 16 15 C 0.12 3.16 5.48 85.56 0.47 3.63 16 16 C 0.09 2.54 5.83 40.87 0.24 2.78 16 17 C -0.21 -5.80 10.95 23.51 0.26 -5.54 16 18 C -0.14 -3.68 6.37 -20.20 -0.13 -3.81 16 19 C -0.09 -2.01 10.05 22.23 0.22 -1.79 16 20 C -0.15 -2.85 9.97 22.03 0.22 -2.63 16 21 C -0.10 -1.83 10.01 22.30 0.22 -1.61 16 22 C -0.14 -2.83 10.08 22.37 0.23 -2.61 16 23 C 0.08 2.03 7.28 39.03 0.28 2.31 16 24 N -0.59 -14.04 5.06 -175.91 -0.89 -14.93 16 25 H 0.42 8.06 8.58 -92.71 -0.80 7.27 16 26 C 0.08 3.35 4.68 86.32 0.40 3.75 16 27 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 28 H 0.06 3.12 6.15 -2.39 -0.01 3.11 16 29 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.07 2.32 8.14 -2.39 -0.02 2.31 16 32 H 0.08 2.21 5.94 -2.38 -0.01 2.20 16 33 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.05 1.30 8.12 -2.39 -0.02 1.28 16 35 H 0.11 2.72 7.98 -2.39 -0.02 2.70 16 36 H 0.15 3.90 8.06 -2.91 -0.02 3.87 16 37 H 0.13 2.54 8.06 -2.91 -0.02 2.52 16 38 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 39 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 40 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 41 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 42 H 0.06 2.58 8.01 -2.39 -0.02 2.56 16 Total: -1.00 -64.39 335.14 1.26 -63.12 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 0.21 Total: 19.84 kcal Atomic # 6 Polarization: -40.99 SS G_CDS: 3.86 Total: -37.13 kcal Atomic # 7 Polarization: -86.63 SS G_CDS: -4.83 Total: -91.46 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -64.39 1.26 -63.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597178453.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.868 kcal (2) G-P(sol) polarization free energy of solvation -64.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds