Wall clock time and date at job start Tue Mar 31 2020 06:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.50023 * 2 1 4 4 C 1.53189 * 109.49807 * 239.93428 * 2 1 3 5 5 N 1.46996 * 108.73580 * 294.65288 * 4 2 1 6 6 C 1.34780 * 120.61455 * 126.38947 * 5 4 2 7 7 O 1.21589 * 119.99601 * 354.79633 * 6 5 4 8 8 N 1.34774 * 120.00193 * 174.79607 * 6 5 4 9 9 C 1.46494 * 119.99993 * 184.98122 * 8 6 5 10 10 C 1.53007 * 109.47080 * 179.97438 * 9 8 6 11 11 C 1.50700 * 109.46914 * 180.02562 * 10 9 8 12 12 H 1.07990 * 120.00377 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99735 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00019 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 120.00197 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47386 * 89.99538 * 15 13 11 17 17 H 1.48501 * 109.47214 * 209.99999 * 15 13 11 18 18 H 1.48500 * 109.46907 * 329.99764 * 15 13 11 19 19 C 1.46927 * 118.75751 * 306.40858 * 5 4 2 20 20 C 1.53196 * 108.77276 * 53.61064 * 19 5 4 21 21 C 1.53040 * 109.49731 * 120.06138 * 2 1 3 22 22 H 1.08997 * 109.46144 * 178.59392 * 21 2 1 23 23 C 1.50710 * 109.45817 * 298.56577 * 21 2 1 24 24 O 1.20818 * 120.00072 * 359.97438 * 23 21 2 25 25 O 1.34227 * 119.99700 * 180.02562 * 23 21 2 26 26 H 1.09005 * 109.47244 * 300.00762 * 1 2 3 27 27 H 1.08999 * 109.47305 * 60.00042 * 1 2 3 28 28 H 1.08997 * 109.47386 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.58965 * 54.47276 * 4 2 1 30 30 H 1.09006 * 109.58432 * 174.89884 * 4 2 1 31 31 H 0.97008 * 119.99910 * 4.97981 * 8 6 5 32 32 H 1.08999 * 109.47195 * 299.99966 * 9 8 6 33 33 H 1.09004 * 109.46934 * 60.00631 * 9 8 6 34 34 H 1.08999 * 109.47313 * 300.00180 * 10 9 8 35 35 H 1.08998 * 109.46534 * 60.00194 * 10 9 8 36 36 H 0.97003 * 120.00291 * 180.02562 * 14 13 11 37 37 H 1.08994 * 109.58901 * 293.82653 * 19 5 4 38 38 H 1.08994 * 109.58876 * 173.39168 * 19 5 4 39 39 H 1.09003 * 109.49963 * 185.41425 * 20 19 5 40 40 H 1.09001 * 109.52817 * 65.32841 * 20 19 5 41 41 H 0.96692 * 117.00293 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7235 -1.2497 5 7 1.6515 -2.1385 -1.1688 6 6 0.9740 -2.7225 -2.1770 7 8 0.5970 -2.0568 -3.1220 8 7 0.7143 -4.0445 -2.1376 9 6 0.0751 -4.6997 -3.2813 10 6 -0.1043 -6.1892 -2.9809 11 6 -0.7614 -6.8634 -4.1577 12 1 -1.0250 -6.2872 -5.0321 13 6 -1.0269 -8.2158 -4.1175 14 7 -1.6007 -8.8041 -5.1442 15 14 -0.5728 -9.2122 -2.6040 16 1 -1.7120 -9.2125 -1.6514 17 1 -0.2625 -10.6080 -3.0050 18 1 0.6171 -8.6082 -1.9524 19 6 2.0140 -2.9040 0.0317 20 6 1.5029 -2.1553 1.2667 21 6 2.0407 -0.7227 1.2486 22 1 3.1304 -0.7442 1.2355 23 6 1.5678 0.0068 2.4796 24 8 0.8922 1.0024 2.3697 25 8 1.8980 -0.4490 3.6982 26 1 -0.3634 0.5140 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.6008 -0.2726 -2.1389 30 1 3.1275 -0.6459 -1.2981 31 1 0.9508 -4.5620 -1.3520 32 1 -0.8990 -4.2454 -3.4626 33 1 0.7018 -4.5807 -4.1652 34 1 0.8699 -6.6433 -2.7998 35 1 -0.7308 -6.3086 -2.0969 36 1 -1.7878 -9.7555 -5.1158 37 1 3.0978 -3.0042 0.0878 38 1 1.5553 -3.8917 -0.0124 39 1 1.8480 -2.6620 2.1680 40 1 0.4132 -2.1349 1.2554 41 1 1.5712 0.0521 4.4578 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599864052.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:17 Heat of formation + Delta-G solvation = -123.999326 kcal Electronic energy + Delta-G solvation = -22983.661936 eV Core-core repulsion = 19477.473139 eV Total energy + Delta-G solvation = -3506.188797 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.25407 -40.01488 -37.85310 -36.47755 -35.03247 -33.72375 -32.68552 -32.01314 -30.01531 -27.70357 -26.52748 -24.49575 -23.36487 -22.47336 -20.91218 -20.33435 -18.90340 -18.41842 -18.16947 -16.96530 -16.81569 -16.03465 -15.87399 -15.68886 -14.94745 -14.46850 -14.24896 -14.04196 -13.88363 -13.67396 -13.60650 -13.21869 -12.93939 -12.60881 -12.21708 -12.17598 -11.85309 -11.78405 -11.45613 -11.29934 -11.20393 -10.91873 -10.85077 -10.54126 -10.38950 -10.24195 -9.96700 -9.72227 -9.32380 -8.82324 -8.62104 -8.32649 -6.10759 -4.10774 1.82857 2.61815 2.80471 3.24759 3.32051 3.33408 3.46061 4.07167 4.14246 4.31785 4.37518 4.52676 4.70193 4.89823 4.94659 5.02746 5.18655 5.22094 5.30810 5.34659 5.46205 5.56077 5.64323 5.76825 5.90044 5.94104 6.06688 6.11943 6.25200 6.32890 6.48440 6.58631 6.81244 6.99102 7.23467 7.25778 7.53142 7.67641 8.20939 8.45522 8.87123 8.94394 9.49284 11.02359 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.027070 B = 0.003458 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.123251 B = 8096.375123 C = 8736.148396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.090 4.090 3 H 0.089 0.911 4 C 0.136 3.864 5 N -0.635 5.635 6 C 0.704 3.296 7 O -0.589 6.589 8 N -0.743 5.743 9 C 0.147 3.853 10 C -0.021 4.021 11 C -0.522 4.522 12 H 0.076 0.924 13 C 0.069 3.931 14 N -0.899 5.899 15 Si 0.882 3.118 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.266 1.266 19 C 0.114 3.886 20 C -0.130 4.130 21 C -0.073 4.073 22 H 0.111 0.889 23 C 0.483 3.517 24 O -0.508 6.508 25 O -0.517 6.517 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.102 0.898 30 H 0.065 0.935 31 H 0.390 0.610 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.021 0.979 35 H 0.016 0.984 36 H 0.265 0.735 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.681 15.829 18.898 26.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.110 4.110 3 H 0.107 0.893 4 C 0.012 3.988 5 N -0.374 5.374 6 C 0.406 3.594 7 O -0.467 6.467 8 N -0.398 5.398 9 C 0.025 3.975 10 C -0.059 4.059 11 C -0.560 4.560 12 H 0.094 0.906 13 C -0.133 4.133 14 N -0.537 5.537 15 Si 0.710 3.290 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.191 1.191 19 C -0.010 4.010 20 C -0.168 4.168 21 C -0.093 4.093 22 H 0.129 0.871 23 C 0.325 3.675 24 O -0.395 6.395 25 O -0.329 6.329 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.120 0.880 30 H 0.084 0.916 31 H 0.225 0.775 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.039 0.961 35 H 0.035 0.965 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.098 0.902 41 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 10.281 16.156 17.694 26.073 hybrid contribution 0.081 -0.602 1.759 1.861 sum 10.363 15.554 19.453 26.977 Atomic orbital electron populations 1.22013 0.93787 1.02328 1.03075 1.21429 0.97958 0.99320 0.92272 0.89267 1.21485 0.98962 0.79902 0.98439 1.47282 1.60472 1.11378 1.18239 1.15912 0.78642 0.82449 0.82411 1.90898 1.57635 1.63085 1.35132 1.45704 1.65696 1.06884 1.21565 1.21385 0.96579 0.93531 0.86045 1.19791 0.97136 0.90768 0.98201 1.20918 1.39570 0.93884 1.01648 0.90575 1.25002 0.94474 0.97703 0.96125 1.69904 1.42416 1.11080 1.30304 0.86749 0.79323 0.79476 0.83491 1.20247 1.21284 1.19113 1.21577 1.00473 0.95065 0.83863 1.22005 1.02509 0.92996 0.99339 1.21094 1.02672 0.96006 0.89488 0.87111 1.23539 0.76571 0.82728 0.84679 1.90690 1.35901 1.25887 1.87044 1.84540 1.72974 1.58419 1.16956 0.90982 0.92231 0.92563 0.88020 0.91647 0.77455 0.92098 0.92179 0.96072 0.96534 0.92556 0.90872 0.89591 0.89279 0.90221 0.73233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 8.40 37.16 0.31 -1.43 16 2 C -0.09 -0.82 2.35 -90.50 -0.21 -1.03 16 3 H 0.09 0.76 8.07 -51.93 -0.42 0.34 16 4 C 0.14 1.40 5.84 -3.67 -0.02 1.38 16 5 N -0.63 -7.56 2.41 -178.45 -0.43 -7.99 16 6 C 0.70 11.73 8.29 -86.92 -0.72 11.01 16 7 O -0.59 -12.23 15.77 5.29 0.08 -12.14 16 8 N -0.74 -12.33 5.46 -65.22 -0.36 -12.68 16 9 C 0.15 3.03 5.62 -4.04 -0.02 3.00 16 10 C -0.02 -0.48 4.16 -27.88 -0.12 -0.60 16 11 C -0.52 -14.58 9.66 -34.44 -0.33 -14.91 16 12 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 13 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 14 N -0.90 -27.31 13.96 55.43 0.77 -26.54 16 15 Si 0.88 20.86 27.47 -169.99 -4.67 16.19 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.27 -5.91 6.54 56.52 0.37 -5.54 16 19 C 0.11 0.96 6.39 -3.71 -0.02 0.93 16 20 C -0.13 -0.95 4.96 -26.61 -0.13 -1.08 16 21 C -0.07 -0.54 2.37 -91.73 -0.22 -0.76 16 22 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 23 C 0.48 4.00 7.34 36.01 0.26 4.27 16 24 O -0.51 -5.71 14.51 -18.74 -0.27 -5.98 16 25 O -0.52 -3.10 13.30 -39.25 -0.52 -3.62 16 26 H 0.07 0.85 5.65 -51.93 -0.29 0.56 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.69 5.97 -51.93 -0.31 0.38 16 29 H 0.10 1.27 7.00 -51.93 -0.36 0.91 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.39 5.37 5.96 -40.82 -0.24 5.12 16 32 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 33 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.02 0.47 7.20 -51.93 -0.37 0.09 16 35 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.09 0.71 5.65 -51.93 -0.29 0.42 16 39 H 0.09 0.51 8.08 -51.93 -0.42 0.09 16 40 H 0.08 0.70 6.34 -51.93 -0.33 0.37 16 41 H 0.41 0.91 9.10 45.56 0.41 1.32 16 LS Contribution 326.21 15.07 4.92 4.92 Total: -1.00 -35.12 326.21 -6.94 -42.06 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -5.15 Total: 3.14 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -1.32 Total: 2.65 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: -0.01 Total: -47.22 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.71 Total: -21.74 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.67 Total: 16.19 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.12 -6.94 -42.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599864052.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.940 kcal (2) G-P(sol) polarization free energy of solvation -35.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds