Wall clock time and date at job start Tue Mar 31 2020 06:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.50023 * 2 1 4 4 C 1.53189 * 109.49807 * 239.93428 * 2 1 3 5 5 N 1.46996 * 108.73580 * 294.65288 * 4 2 1 6 6 C 1.34780 * 120.61455 * 126.38947 * 5 4 2 7 7 O 1.21589 * 119.99601 * 354.79633 * 6 5 4 8 8 N 1.34774 * 120.00193 * 174.79607 * 6 5 4 9 9 C 1.46494 * 119.99993 * 184.98122 * 8 6 5 10 10 C 1.53007 * 109.47080 * 179.97438 * 9 8 6 11 11 C 1.50700 * 109.46914 * 180.02562 * 10 9 8 12 12 H 1.07990 * 120.00377 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99735 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00019 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 120.00197 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47386 * 89.99538 * 15 13 11 17 17 H 1.48501 * 109.47214 * 209.99999 * 15 13 11 18 18 H 1.48500 * 109.46907 * 329.99764 * 15 13 11 19 19 C 1.46927 * 118.75751 * 306.40858 * 5 4 2 20 20 C 1.53196 * 108.77276 * 53.61064 * 19 5 4 21 21 C 1.53040 * 109.49731 * 120.06138 * 2 1 3 22 22 H 1.08997 * 109.46144 * 178.59392 * 21 2 1 23 23 C 1.50710 * 109.45817 * 298.56577 * 21 2 1 24 24 O 1.20818 * 120.00072 * 359.97438 * 23 21 2 25 25 O 1.34227 * 119.99700 * 180.02562 * 23 21 2 26 26 H 1.09005 * 109.47244 * 300.00762 * 1 2 3 27 27 H 1.08999 * 109.47305 * 60.00042 * 1 2 3 28 28 H 1.08997 * 109.47386 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.58965 * 54.47276 * 4 2 1 30 30 H 1.09006 * 109.58432 * 174.89884 * 4 2 1 31 31 H 0.97008 * 119.99910 * 4.97981 * 8 6 5 32 32 H 1.08999 * 109.47195 * 299.99966 * 9 8 6 33 33 H 1.09004 * 109.46934 * 60.00631 * 9 8 6 34 34 H 1.08999 * 109.47313 * 300.00180 * 10 9 8 35 35 H 1.08998 * 109.46534 * 60.00194 * 10 9 8 36 36 H 0.97003 * 120.00291 * 180.02562 * 14 13 11 37 37 H 1.08994 * 109.58901 * 293.82653 * 19 5 4 38 38 H 1.08994 * 109.58876 * 173.39168 * 19 5 4 39 39 H 1.09003 * 109.49963 * 185.41425 * 20 19 5 40 40 H 1.09001 * 109.52817 * 65.32841 * 20 19 5 41 41 H 0.96692 * 117.00293 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7235 -1.2497 5 7 1.6515 -2.1385 -1.1688 6 6 0.9740 -2.7225 -2.1770 7 8 0.5970 -2.0568 -3.1220 8 7 0.7143 -4.0445 -2.1376 9 6 0.0751 -4.6997 -3.2813 10 6 -0.1043 -6.1892 -2.9809 11 6 -0.7614 -6.8634 -4.1577 12 1 -1.0250 -6.2872 -5.0321 13 6 -1.0269 -8.2158 -4.1175 14 7 -1.6007 -8.8041 -5.1442 15 14 -0.5728 -9.2122 -2.6040 16 1 -1.7120 -9.2125 -1.6514 17 1 -0.2625 -10.6080 -3.0050 18 1 0.6171 -8.6082 -1.9524 19 6 2.0140 -2.9040 0.0317 20 6 1.5029 -2.1553 1.2667 21 6 2.0407 -0.7227 1.2486 22 1 3.1304 -0.7442 1.2355 23 6 1.5678 0.0068 2.4796 24 8 0.8922 1.0024 2.3697 25 8 1.8980 -0.4490 3.6982 26 1 -0.3634 0.5140 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.6008 -0.2726 -2.1389 30 1 3.1275 -0.6459 -1.2981 31 1 0.9508 -4.5620 -1.3520 32 1 -0.8990 -4.2454 -3.4626 33 1 0.7018 -4.5807 -4.1652 34 1 0.8699 -6.6433 -2.7998 35 1 -0.7308 -6.3086 -2.0969 36 1 -1.7878 -9.7555 -5.1158 37 1 3.0978 -3.0042 0.0878 38 1 1.5553 -3.8917 -0.0124 39 1 1.8480 -2.6620 2.1680 40 1 0.4132 -2.1349 1.2554 41 1 1.5712 0.0521 4.4578 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599864052.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:17 Heat of formation + Delta-G solvation = -150.036059 kcal Electronic energy + Delta-G solvation = -22984.790974 eV Core-core repulsion = 19477.473139 eV Total energy + Delta-G solvation = -3507.317834 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.01474 -41.01560 -38.80477 -37.08730 -36.63952 -35.01909 -34.34422 -32.80419 -31.77245 -28.47762 -27.73167 -26.10817 -24.07931 -23.22926 -22.67212 -21.46061 -19.83458 -19.22163 -18.97510 -18.94900 -17.55363 -17.07795 -16.87291 -16.64046 -16.24305 -15.94417 -15.42696 -15.32068 -15.02314 -14.74110 -14.53740 -14.45886 -14.12402 -13.84645 -13.34442 -13.07134 -12.92965 -12.86553 -12.67402 -12.45543 -12.15585 -12.12023 -12.03859 -11.74087 -11.65371 -11.58427 -11.47622 -11.31523 -11.06560 -10.77212 -10.16724 -9.45286 -8.28206 -6.35740 1.23057 1.40769 1.43870 1.55117 1.66872 2.08965 2.21970 2.38952 3.00666 3.06905 3.47762 3.63226 3.94707 3.95221 4.16730 4.32591 4.36770 4.37670 4.46500 4.56949 4.62778 4.71067 4.71399 4.77189 4.84547 4.88652 5.07694 5.08773 5.14457 5.19639 5.34641 5.43075 5.46412 5.59523 5.69156 5.72010 5.94732 6.24849 6.71645 7.02594 7.04257 7.28779 7.59963 8.88779 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.027070 B = 0.003458 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.123251 B = 8096.375123 C = 8736.148396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.083 4.083 3 H 0.097 0.903 4 C 0.134 3.866 5 N -0.625 5.625 6 C 0.699 3.301 7 O -0.639 6.639 8 N -0.733 5.733 9 C 0.164 3.836 10 C -0.010 4.010 11 C -0.539 4.539 12 H 0.027 0.973 13 C 0.003 3.997 14 N -0.952 5.952 15 Si 0.961 3.039 16 H -0.266 1.266 17 H -0.287 1.287 18 H -0.233 1.233 19 C 0.107 3.893 20 C -0.123 4.123 21 C -0.071 4.071 22 H 0.144 0.856 23 C 0.488 3.512 24 O -0.545 6.545 25 O -0.510 6.510 26 H 0.066 0.934 27 H 0.040 0.960 28 H 0.042 0.958 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.408 0.592 32 H 0.036 0.964 33 H 0.041 0.959 34 H 0.039 0.961 35 H 0.034 0.966 36 H 0.268 0.732 37 H 0.106 0.894 38 H 0.089 0.911 39 H 0.116 0.884 40 H 0.060 0.940 41 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.311 15.263 22.815 30.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.103 4.103 3 H 0.116 0.884 4 C 0.011 3.989 5 N -0.362 5.362 6 C 0.401 3.599 7 O -0.521 6.521 8 N -0.391 5.391 9 C 0.040 3.960 10 C -0.048 4.048 11 C -0.578 4.578 12 H 0.045 0.955 13 C -0.194 4.194 14 N -0.592 5.592 15 Si 0.783 3.217 16 H -0.191 1.191 17 H -0.213 1.213 18 H -0.156 1.156 19 C -0.015 4.015 20 C -0.161 4.161 21 C -0.089 4.089 22 H 0.161 0.839 23 C 0.332 3.668 24 O -0.435 6.435 25 O -0.323 6.323 26 H 0.085 0.915 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.116 0.884 31 H 0.246 0.754 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.077 0.923 37 H 0.124 0.876 38 H 0.108 0.892 39 H 0.134 0.866 40 H 0.079 0.921 41 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 12.957 15.613 21.702 29.710 hybrid contribution -0.765 -0.335 0.519 0.983 sum 12.193 15.278 22.222 29.595 Atomic orbital electron populations 1.21945 0.95905 1.01028 1.01855 1.21332 0.96020 1.00023 0.92902 0.88447 1.21611 1.00587 0.78821 0.97860 1.47322 1.58719 1.12111 1.18049 1.16088 0.78791 0.82110 0.82929 1.90869 1.59626 1.64089 1.37548 1.45298 1.65567 1.07161 1.21038 1.20859 0.95416 0.92755 0.86992 1.19630 0.97530 0.91239 0.96373 1.21256 1.40108 0.94322 1.02100 0.95465 1.26112 0.94117 0.99060 1.00135 1.70083 1.44163 1.11685 1.33309 0.85518 0.80453 0.77160 0.78608 1.19083 1.21304 1.15577 1.21935 1.02543 0.94734 0.82285 1.21962 1.01377 0.92984 0.99815 1.21101 1.04423 0.95413 0.88000 0.83884 1.23627 0.75661 0.82040 0.85483 1.90693 1.37608 1.27617 1.87595 1.84490 1.72536 1.58361 1.16904 0.91513 0.94076 0.93860 0.90971 0.88388 0.75360 0.94506 0.94071 0.94236 0.94733 0.92342 0.87599 0.89249 0.86589 0.92123 0.71251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 8.40 71.98 0.60 -2.80 16 2 C -0.08 -1.37 2.35 -10.72 -0.03 -1.39 16 3 H 0.10 1.48 8.07 -2.38 -0.02 1.46 16 4 C 0.13 2.54 5.84 86.35 0.50 3.04 16 5 N -0.62 -13.63 2.41 -836.74 -2.02 -15.64 16 6 C 0.70 22.98 8.29 179.05 1.49 24.47 16 7 O -0.64 -27.42 15.77 -4.00 -0.06 -27.48 16 8 N -0.73 -23.43 5.46 -478.53 -2.61 -26.05 16 9 C 0.16 6.84 5.62 86.38 0.49 7.32 16 10 C -0.01 -0.44 4.16 29.85 0.12 -0.31 16 11 C -0.54 -30.88 9.66 25.60 0.25 -30.63 16 12 H 0.03 1.76 7.99 -2.92 -0.02 1.73 16 13 C 0.00 0.15 5.47 84.66 0.46 0.61 16 14 N -0.95 -59.52 13.96 21.45 0.30 -59.22 16 15 Si 0.96 41.75 27.47 68.60 1.88 43.63 16 16 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 17 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 18 H -0.23 -8.82 6.54 99.48 0.65 -8.17 16 19 C 0.11 1.35 6.39 86.36 0.55 1.91 16 20 C -0.12 -1.32 4.96 30.67 0.15 -1.17 16 21 C -0.07 -0.78 2.37 -11.51 -0.03 -0.81 16 22 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 23 C 0.49 6.70 7.34 71.24 0.52 7.22 16 24 O -0.54 -11.44 14.51 21.99 0.32 -11.12 16 25 O -0.51 -4.24 13.30 -51.39 -0.68 -4.92 16 26 H 0.07 1.59 5.65 -2.38 -0.01 1.57 16 27 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.04 1.07 5.97 -2.39 -0.01 1.05 16 29 H 0.07 1.84 7.00 -2.39 -0.02 1.82 16 30 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 31 H 0.41 9.99 5.96 -92.70 -0.55 9.43 16 32 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.04 1.62 7.20 -2.39 -0.02 1.60 16 35 H 0.03 1.42 7.57 -2.39 -0.02 1.40 16 36 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 37 H 0.11 0.77 8.14 -2.39 -0.02 0.76 16 38 H 0.09 1.10 5.65 -2.39 -0.01 1.08 16 39 H 0.12 0.71 8.08 -2.39 -0.02 0.69 16 40 H 0.06 0.92 6.34 -2.39 -0.02 0.90 16 41 H 0.43 0.54 9.10 -74.06 -0.67 -0.14 16 Total: -1.00 -80.95 326.21 1.99 -78.96 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -0.22 Total: 14.37 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: 5.09 Total: 7.47 kcal Atomic # 7 Polarization: -96.57 SS G_CDS: -4.33 Total: -100.91 kcal Atomic # 8 Polarization: -43.09 SS G_CDS: -0.43 Total: -43.52 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 1.88 Total: 43.63 kcal Total: -80.95 1.99 -78.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599864052.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.081 kcal (2) G-P(sol) polarization free energy of solvation -80.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds