Wall clock time and date at job start Tue Mar 31 2020 06:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 120.00101 * 2 1 4 4 H 1.48492 * 109.47078 * 240.00290 * 3 2 1 5 5 H 1.48501 * 109.47059 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46983 * 120.00264 * 3 2 1 7 7 C 1.37881 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00076 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99745 * 359.97438 * 7 2 1 10 10 C 1.53122 * 109.52215 * 179.97438 * 9 7 2 11 11 C 1.53041 * 109.27704 * 177.62315 * 10 9 7 12 12 N 1.46842 * 109.52151 * 300.81505 * 11 10 9 13 13 C 1.46899 * 111.00180 * 185.83820 * 12 11 10 14 14 C 1.50696 * 109.47584 * 170.00317 * 13 12 11 15 15 C 1.38837 * 119.73468 * 269.98745 * 14 13 12 16 16 C 1.37749 * 120.66169 * 180.02562 * 15 14 13 17 17 C 1.39125 * 119.78251 * 359.96917 * 16 15 14 18 18 N 1.37688 * 133.50730 * 180.02562 * 17 16 15 19 19 H 0.97000 * 125.06758 * 359.95010 * 18 17 16 20 20 C 1.36835 * 109.87251 * 179.97438 * 18 17 16 21 21 C 1.34239 * 109.93059 * 0.26493 * 20 18 17 22 22 C 1.40668 * 119.33243 * 0.02607 * 17 16 15 23 23 C 1.36626 * 119.73539 * 90.00326 * 14 13 12 24 24 C 1.46854 * 111.19604 * 61.74915 * 12 11 10 25 25 C 1.53034 * 109.51988 * 298.25156 * 24 12 11 26 26 H 0.96996 * 119.99677 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.52531 * 59.87483 * 9 7 2 28 28 H 1.09004 * 109.50303 * 57.68009 * 10 9 7 29 29 H 1.09007 * 109.53288 * 297.58276 * 10 9 7 30 30 H 1.08999 * 109.45713 * 180.80700 * 11 10 9 31 31 H 1.08989 * 109.45390 * 60.83210 * 11 10 9 32 32 H 1.09008 * 109.46468 * 50.00650 * 13 12 11 33 33 H 1.08999 * 109.47735 * 290.00794 * 13 12 11 34 34 H 1.07992 * 119.66994 * 0.02562 * 15 14 13 35 35 H 1.08008 * 120.10740 * 179.97438 * 16 15 14 36 36 H 1.08002 * 125.03193 * 179.97438 * 20 18 17 37 37 H 1.07993 * 126.50200 * 179.71624 * 21 20 18 38 38 H 1.07997 * 120.11857 * 0.02562 * 23 14 13 39 39 H 1.09002 * 109.46305 * 58.26874 * 24 12 11 40 40 H 1.09000 * 109.46420 * 178.24107 * 24 12 11 41 41 H 1.08996 * 109.51001 * 299.24200 * 25 24 12 42 42 H 1.09002 * 109.50234 * 179.11998 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2450 -3.6639 -0.0018 11 6 1.4751 -4.9852 0.0581 12 7 0.6544 -5.0201 1.2752 13 6 0.0080 -6.3293 1.4370 14 6 -0.6199 -6.4141 2.8043 15 6 0.1191 -6.9048 3.8722 16 6 -0.4360 -6.9912 5.1300 17 6 -1.7500 -6.5825 5.3349 18 7 -2.5691 -6.5437 6.4410 19 1 -2.3152 -6.8289 7.3327 20 6 -3.7947 -6.0434 6.0948 21 6 -3.8168 -5.7525 4.7845 22 6 -2.4945 -6.0860 4.2496 23 6 -1.9121 -6.0077 2.9829 24 6 -0.3395 -3.9389 1.2767 25 6 0.3762 -2.5864 1.2531 26 1 -0.4849 0.8400 0.0004 27 1 0.6220 -2.5566 -0.8888 28 1 2.8998 -3.5845 0.8660 29 1 2.8427 -3.6319 -0.9128 30 1 2.1804 -5.8161 0.0718 31 1 0.8309 -5.0699 -0.8170 32 1 0.7529 -7.1179 1.3298 33 1 -0.7621 -6.4510 0.6753 34 1 1.1394 -7.2221 3.7153 35 1 0.1470 -7.3748 5.9543 36 1 -4.6232 -5.9074 6.7742 37 1 -4.6507 -5.3479 4.2303 38 1 -2.4811 -5.6276 2.1474 39 1 -0.9752 -4.0288 0.3958 40 1 -0.9521 -4.0099 2.1754 41 1 1.0016 -2.4901 2.1406 42 1 -0.3618 -1.7844 1.2384 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600146558.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:53 Heat of formation + Delta-G solvation = 52.592353 kcal Electronic energy + Delta-G solvation = -21946.392238 eV Core-core repulsion = 18891.003045 eV Total energy + Delta-G solvation = -3055.389193 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.13998 -38.51660 -36.75244 -33.80438 -31.96623 -31.47468 -29.71021 -29.46557 -28.65135 -26.23694 -24.22835 -22.54888 -21.93662 -21.52378 -20.91292 -20.01381 -18.50773 -17.92199 -16.33382 -16.08880 -15.20483 -15.09260 -14.47464 -14.43446 -14.27346 -13.82506 -13.62172 -13.09763 -13.06056 -12.78776 -12.51224 -12.39617 -12.28798 -11.64834 -11.54148 -11.10832 -11.07030 -10.85601 -10.79395 -10.59558 -10.34862 -10.11713 -9.88103 -9.65860 -9.32756 -8.87554 -8.61148 -8.21828 -8.04431 -7.71517 -7.53070 -5.89860 -3.94996 1.24796 1.73597 2.75741 3.12846 3.37547 3.41782 3.44757 3.96870 4.51073 4.69535 4.81249 4.85809 5.11021 5.17825 5.38750 5.40246 5.48547 5.60504 5.76978 5.79660 5.86140 5.93134 6.01185 6.08410 6.18621 6.24859 6.33831 6.42036 6.53527 6.72488 6.74625 6.75405 6.82722 6.91418 6.95663 7.17016 7.26024 7.27598 7.51346 7.55019 7.72133 7.81152 7.92858 8.14625 8.25641 8.56706 9.08504 9.68859 11.16284 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.020627 B = 0.003942 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.124415 B = 7101.844636 C = 7873.761648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.510 4.510 8 H 0.053 0.947 9 C 0.048 3.952 10 C -0.106 4.106 11 C 0.061 3.939 12 N -0.530 5.530 13 C 0.095 3.905 14 C -0.092 4.092 15 C -0.073 4.073 16 C -0.137 4.137 17 C 0.092 3.908 18 N -0.600 5.600 19 H 0.412 0.588 20 C 0.041 3.959 21 C -0.202 4.202 22 C -0.110 4.110 23 C -0.062 4.062 24 C 0.054 3.946 25 C -0.102 4.102 26 H 0.259 0.741 27 H 0.020 0.980 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.023 0.977 32 H 0.074 0.926 33 H 0.034 0.966 34 H 0.125 0.875 35 H 0.116 0.884 36 H 0.167 0.833 37 H 0.144 0.856 38 H 0.119 0.881 39 H 0.019 0.981 40 H 0.061 0.939 41 H 0.041 0.959 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.942 -15.561 10.557 19.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.549 4.549 8 H 0.071 0.929 9 C 0.029 3.971 10 C -0.144 4.144 11 C -0.067 4.067 12 N -0.255 5.255 13 C -0.033 4.033 14 C -0.094 4.094 15 C -0.092 4.092 16 C -0.158 4.158 17 C -0.015 4.015 18 N -0.204 5.204 19 H 0.248 0.752 20 C -0.084 4.084 21 C -0.227 4.227 22 C -0.114 4.114 23 C -0.081 4.081 24 C -0.073 4.073 25 C -0.141 4.141 26 H 0.069 0.931 27 H 0.038 0.962 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.041 0.959 32 H 0.093 0.907 33 H 0.052 0.948 34 H 0.143 0.857 35 H 0.134 0.866 36 H 0.184 0.816 37 H 0.162 0.838 38 H 0.137 0.863 39 H 0.038 0.962 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.780 -15.377 11.054 19.800 hybrid contribution -0.053 0.775 -0.162 0.793 sum -5.833 -14.602 10.893 19.128 Atomic orbital electron populations 1.69872 1.05847 1.26311 1.51094 1.24962 0.94816 0.98917 0.95273 0.86714 0.79634 0.83430 0.78525 1.20407 1.21404 1.20348 1.21186 0.92817 0.90756 1.50103 0.92867 1.18680 0.92709 0.91671 0.93996 1.21674 0.98694 0.93818 1.00176 1.22118 0.95700 0.99232 0.89649 1.62024 1.23725 1.01668 1.38050 1.20975 0.96947 0.92988 0.92389 1.19252 0.93545 1.00787 0.95772 1.20669 0.99073 0.98337 0.91165 1.19949 0.92046 1.05926 0.97883 1.18260 0.93065 1.03148 0.87003 1.41745 1.11291 1.57573 1.09775 0.75192 1.21738 0.88271 1.01660 0.96760 1.21722 0.97054 1.09961 0.93960 1.19162 0.94437 1.04595 0.93248 1.20192 0.94571 0.98097 0.95235 1.22350 0.93235 0.92865 0.98828 1.21634 1.00095 0.93118 0.99212 0.93111 0.96229 0.92537 0.93280 0.92494 0.95885 0.90721 0.94790 0.85710 0.86578 0.81600 0.83797 0.86283 0.96238 0.92021 0.93986 0.89123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.96 11.38 55.43 0.63 -25.33 16 2 C 0.06 1.72 5.31 -17.82 -0.09 1.63 16 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.51 -14.36 8.56 -34.44 -0.29 -14.65 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.05 1.23 2.16 -91.65 -0.20 1.03 16 10 C -0.11 -2.28 5.32 -26.65 -0.14 -2.42 16 11 C 0.06 1.12 5.46 -3.83 -0.02 1.10 16 12 N -0.53 -9.80 4.65 -236.12 -1.10 -10.90 16 13 C 0.09 1.44 5.11 -4.98 -0.03 1.41 16 14 C -0.09 -1.37 4.87 -104.98 -0.51 -1.88 16 15 C -0.07 -0.99 9.66 -39.54 -0.38 -1.37 16 16 C -0.14 -1.73 10.08 -39.43 -0.40 -2.13 16 17 C 0.09 1.21 7.28 -83.99 -0.61 0.60 16 18 N -0.60 -6.04 6.07 -10.65 -0.06 -6.10 16 19 H 0.41 2.77 8.96 -40.82 -0.37 2.41 16 20 C 0.04 0.40 11.82 -16.73 -0.20 0.20 16 21 C -0.20 -2.45 11.08 -37.67 -0.42 -2.87 16 22 C -0.11 -1.60 6.37 -105.14 -0.67 -2.27 16 23 C -0.06 -0.93 7.83 -39.64 -0.31 -1.24 16 24 C 0.05 1.12 5.14 -3.83 -0.02 1.10 16 25 C -0.10 -2.52 5.12 -26.65 -0.14 -2.66 16 26 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 27 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.91 8.02 -51.93 -0.42 0.49 16 31 H 0.02 0.43 8.14 -51.94 -0.42 0.00 16 32 H 0.07 1.00 7.93 -51.92 -0.41 0.59 16 33 H 0.03 0.51 8.06 -51.93 -0.42 0.09 16 34 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 35 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 36 H 0.17 0.97 8.06 -52.49 -0.42 0.54 16 37 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.12 1.75 7.93 -52.49 -0.42 1.33 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 1.24 5.74 -51.93 -0.30 0.94 16 41 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.09 2.47 6.18 -51.93 -0.32 2.15 16 LS Contribution 334.05 15.07 5.03 5.03 Total: -1.00 -31.30 334.05 -11.36 -42.66 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -6.42 Total: 2.36 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: -4.43 Total: -24.42 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: -0.53 Total: -42.33 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.30 -11.36 -42.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600146558.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.256 kcal (2) G-P(sol) polarization free energy of solvation -31.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds