Wall clock time and date at job start Tue Mar 31 2020 06:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 120.00101 * 2 1 4 4 H 1.48492 * 109.47078 * 240.00290 * 3 2 1 5 5 H 1.48501 * 109.47059 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46983 * 120.00264 * 3 2 1 7 7 C 1.37881 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00076 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99745 * 359.97438 * 7 2 1 10 10 C 1.53122 * 109.52215 * 179.97438 * 9 7 2 11 11 C 1.53041 * 109.27704 * 177.62315 * 10 9 7 12 12 N 1.46842 * 109.52151 * 300.81505 * 11 10 9 13 13 C 1.46899 * 111.00180 * 185.83820 * 12 11 10 14 14 C 1.50696 * 109.47584 * 170.00317 * 13 12 11 15 15 C 1.38837 * 119.73468 * 269.98745 * 14 13 12 16 16 C 1.37749 * 120.66169 * 180.02562 * 15 14 13 17 17 C 1.39125 * 119.78251 * 359.96917 * 16 15 14 18 18 N 1.37688 * 133.50730 * 180.02562 * 17 16 15 19 19 H 0.97000 * 125.06758 * 359.95010 * 18 17 16 20 20 C 1.36835 * 109.87251 * 179.97438 * 18 17 16 21 21 C 1.34239 * 109.93059 * 0.26493 * 20 18 17 22 22 C 1.40668 * 119.33243 * 0.02607 * 17 16 15 23 23 C 1.36626 * 119.73539 * 90.00326 * 14 13 12 24 24 C 1.46854 * 111.19604 * 61.74915 * 12 11 10 25 25 C 1.53034 * 109.51988 * 298.25156 * 24 12 11 26 26 H 0.96996 * 119.99677 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.52531 * 59.87483 * 9 7 2 28 28 H 1.09004 * 109.50303 * 57.68009 * 10 9 7 29 29 H 1.09007 * 109.53288 * 297.58276 * 10 9 7 30 30 H 1.08999 * 109.45713 * 180.80700 * 11 10 9 31 31 H 1.08989 * 109.45390 * 60.83210 * 11 10 9 32 32 H 1.09008 * 109.46468 * 50.00650 * 13 12 11 33 33 H 1.08999 * 109.47735 * 290.00794 * 13 12 11 34 34 H 1.07992 * 119.66994 * 0.02562 * 15 14 13 35 35 H 1.08008 * 120.10740 * 179.97438 * 16 15 14 36 36 H 1.08002 * 125.03193 * 179.97438 * 20 18 17 37 37 H 1.07993 * 126.50200 * 179.71624 * 21 20 18 38 38 H 1.07997 * 120.11857 * 0.02562 * 23 14 13 39 39 H 1.09002 * 109.46305 * 58.26874 * 24 12 11 40 40 H 1.09000 * 109.46420 * 178.24107 * 24 12 11 41 41 H 1.08996 * 109.51001 * 299.24200 * 25 24 12 42 42 H 1.09002 * 109.50234 * 179.11998 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2450 -3.6639 -0.0018 11 6 1.4751 -4.9852 0.0581 12 7 0.6544 -5.0201 1.2752 13 6 0.0080 -6.3293 1.4370 14 6 -0.6199 -6.4141 2.8043 15 6 0.1191 -6.9048 3.8722 16 6 -0.4360 -6.9912 5.1300 17 6 -1.7500 -6.5825 5.3349 18 7 -2.5691 -6.5437 6.4410 19 1 -2.3152 -6.8289 7.3327 20 6 -3.7947 -6.0434 6.0948 21 6 -3.8168 -5.7525 4.7845 22 6 -2.4945 -6.0860 4.2496 23 6 -1.9121 -6.0077 2.9829 24 6 -0.3395 -3.9389 1.2767 25 6 0.3762 -2.5864 1.2531 26 1 -0.4849 0.8400 0.0004 27 1 0.6220 -2.5566 -0.8888 28 1 2.8998 -3.5845 0.8660 29 1 2.8427 -3.6319 -0.9128 30 1 2.1804 -5.8161 0.0718 31 1 0.8309 -5.0699 -0.8170 32 1 0.7529 -7.1179 1.3298 33 1 -0.7621 -6.4510 0.6753 34 1 1.1394 -7.2221 3.7153 35 1 0.1470 -7.3748 5.9543 36 1 -4.6232 -5.9074 6.7742 37 1 -4.6507 -5.3479 4.2303 38 1 -2.4811 -5.6276 2.1474 39 1 -0.9752 -4.0288 0.3958 40 1 -0.9521 -4.0099 2.1754 41 1 1.0016 -2.4901 2.1406 42 1 -0.3618 -1.7844 1.2384 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600146558.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:52 Heat of formation + Delta-G solvation = 34.503269 kcal Electronic energy + Delta-G solvation = -21947.176640 eV Core-core repulsion = 18891.003045 eV Total energy + Delta-G solvation = -3056.173594 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.05302 -39.98764 -37.97524 -35.59545 -33.45568 -32.73989 -31.43976 -30.79471 -29.58369 -27.91573 -25.82506 -23.81561 -23.42509 -23.11727 -21.88447 -21.07991 -20.31756 -18.85432 -18.42460 -17.06682 -16.87424 -16.31966 -16.19180 -15.77038 -15.26067 -14.98696 -14.86116 -14.61676 -14.53932 -14.23915 -14.06290 -13.83553 -13.40200 -13.16517 -12.98672 -12.83811 -12.54798 -12.51588 -12.27503 -12.08183 -11.91959 -11.82042 -11.68262 -11.31657 -10.78480 -10.68284 -10.55427 -10.35672 -9.19147 -8.97389 -8.55152 -8.06123 -6.19913 0.27472 0.69603 1.41495 1.43477 1.50881 1.88694 2.34346 2.44931 2.85360 3.20343 3.36414 3.82517 3.95838 4.08056 4.26289 4.31353 4.35014 4.35764 4.48037 4.54269 4.58142 4.62684 4.75933 4.81460 4.90190 4.93336 4.97224 5.01647 5.12000 5.13947 5.24515 5.26892 5.35723 5.53437 5.59125 5.64097 5.80086 5.86424 5.87402 6.01827 6.05841 6.27890 6.32641 6.39917 6.42426 6.80407 6.91987 7.47726 8.98373 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.020627 B = 0.003942 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.124415 B = 7101.844636 C = 7873.761648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.011 3.989 3 Si 0.954 3.046 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.052 0.948 9 C 0.044 3.956 10 C -0.099 4.099 11 C 0.065 3.935 12 N -0.534 5.534 13 C 0.098 3.902 14 C -0.105 4.105 15 C -0.088 4.088 16 C -0.133 4.133 17 C 0.076 3.924 18 N -0.589 5.589 19 H 0.430 0.570 20 C 0.067 3.933 21 C -0.242 4.242 22 C -0.138 4.138 23 C -0.084 4.084 24 C 0.071 3.929 25 C -0.092 4.092 26 H 0.259 0.741 27 H -0.013 1.013 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.094 0.906 31 H 0.021 0.979 32 H 0.100 0.900 33 H 0.034 0.966 34 H 0.141 0.859 35 H 0.145 0.855 36 H 0.211 0.789 37 H 0.150 0.850 38 H 0.108 0.892 39 H 0.010 0.990 40 H 0.065 0.935 41 H 0.025 0.975 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.354 -16.859 12.362 21.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.187 4.187 3 Si 0.779 3.221 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.573 4.573 8 H 0.070 0.930 9 C 0.026 3.974 10 C -0.137 4.137 11 C -0.062 4.062 12 N -0.259 5.259 13 C -0.029 4.029 14 C -0.106 4.106 15 C -0.107 4.107 16 C -0.153 4.153 17 C -0.032 4.032 18 N -0.193 5.193 19 H 0.269 0.731 20 C -0.060 4.060 21 C -0.267 4.267 22 C -0.142 4.142 23 C -0.104 4.104 24 C -0.056 4.056 25 C -0.130 4.130 26 H 0.069 0.931 27 H 0.005 0.995 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.112 0.888 31 H 0.039 0.961 32 H 0.119 0.881 33 H 0.052 0.948 34 H 0.159 0.841 35 H 0.163 0.837 36 H 0.228 0.772 37 H 0.168 0.832 38 H 0.126 0.874 39 H 0.028 0.972 40 H 0.084 0.916 41 H 0.044 0.956 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.180 -16.701 12.878 21.716 hybrid contribution -0.306 1.159 -0.650 1.364 sum -5.486 -15.542 12.228 20.522 Atomic orbital electron populations 1.70025 1.07238 1.27066 1.51536 1.25767 0.95666 1.02421 0.94847 0.85683 0.78436 0.79137 0.78831 1.19524 1.20955 1.19739 1.21583 0.93029 0.92289 1.50368 0.92987 1.18657 0.93180 0.92813 0.92773 1.21541 0.97907 0.93988 1.00233 1.22084 0.96031 0.98501 0.89595 1.61965 1.23326 1.02596 1.38040 1.21038 0.97523 0.91462 0.92832 1.19304 0.93638 1.01649 0.96042 1.20889 0.99798 0.98762 0.91258 1.20277 0.92008 1.04642 0.98368 1.18471 0.93605 1.03395 0.87710 1.41818 1.10920 1.56629 1.09977 0.73069 1.22393 0.88726 0.98411 0.96446 1.21991 0.96821 1.12379 0.95463 1.19551 0.95966 1.05145 0.93568 1.20242 0.95121 0.99403 0.95621 1.22017 0.93151 0.91864 0.98607 1.21388 0.99017 0.94598 0.98033 0.93145 0.99460 0.93059 0.92613 0.88812 0.96079 0.88148 0.94762 0.84120 0.83749 0.77226 0.83240 0.87392 0.97173 0.91620 0.95596 0.92442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.18 11.38 21.45 0.24 -54.94 16 2 C 0.01 0.65 5.31 84.66 0.45 1.09 16 3 Si 0.95 45.03 29.54 68.60 2.03 47.06 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.53 -30.79 8.56 25.60 0.22 -30.58 16 8 H 0.05 2.93 7.74 -2.91 -0.02 2.90 16 9 C 0.04 2.34 2.16 -11.46 -0.02 2.32 16 10 C -0.10 -4.26 5.32 30.65 0.16 -4.09 16 11 C 0.07 2.32 5.46 86.33 0.47 2.80 16 12 N -0.53 -19.45 4.65 -900.94 -4.19 -23.63 16 13 C 0.10 2.88 5.11 85.56 0.44 3.31 16 14 C -0.10 -3.08 4.87 -20.10 -0.10 -3.18 16 15 C -0.09 -2.24 9.66 22.30 0.22 -2.03 16 16 C -0.13 -3.07 10.08 22.37 0.23 -2.84 16 17 C 0.08 1.88 7.28 39.03 0.28 2.16 16 18 N -0.59 -10.22 6.07 -187.61 -1.14 -11.35 16 19 H 0.43 4.28 8.96 -92.71 -0.83 3.45 16 20 C 0.07 1.11 11.82 83.00 0.98 2.09 16 21 C -0.24 -5.71 11.08 23.51 0.26 -5.45 16 22 C -0.14 -3.98 6.37 -20.20 -0.13 -4.11 16 23 C -0.08 -2.62 7.83 22.23 0.17 -2.44 16 24 C 0.07 3.04 5.14 86.32 0.44 3.48 16 25 C -0.09 -4.72 5.12 30.65 0.16 -4.57 16 26 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 27 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 28 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.06 2.28 8.14 -2.38 -0.02 2.27 16 30 H 0.09 2.70 8.02 -2.39 -0.02 2.68 16 31 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.10 2.42 7.93 -2.38 -0.02 2.40 16 33 H 0.03 1.00 8.06 -2.39 -0.02 0.98 16 34 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 35 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 36 H 0.21 1.51 8.06 -2.91 -0.02 1.49 16 37 H 0.15 3.16 8.06 -2.91 -0.02 3.13 16 38 H 0.11 3.40 7.93 -2.91 -0.02 3.38 16 39 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.07 2.73 5.74 -2.39 -0.01 2.72 16 41 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.06 3.31 6.18 -2.39 -0.01 3.29 16 Total: -1.00 -69.95 334.05 1.35 -68.60 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.18 Total: 16.30 kcal Atomic # 6 Polarization: -46.26 SS G_CDS: 4.23 Total: -42.03 kcal Atomic # 7 Polarization: -84.85 SS G_CDS: -5.08 Total: -89.93 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -69.95 1.35 -68.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600146558.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.100 kcal (2) G-P(sol) polarization free energy of solvation -69.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds