Wall clock time and date at job start Tue Mar 31 2020 06:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99925 * 2 1 4 4 H 1.48500 * 109.47528 * 270.00229 * 3 2 1 5 5 H 1.48505 * 109.47394 * 30.00733 * 3 2 1 6 6 H 1.48503 * 109.47091 * 150.00244 * 3 2 1 7 7 C 1.37876 * 119.99822 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99407 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00134 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.50784 * 299.92555 * 9 7 2 11 11 C 1.53125 * 109.50010 * 60.00440 * 9 7 2 12 12 C 1.53124 * 109.15713 * 177.59280 * 11 9 7 13 13 C 1.53029 * 109.28082 * 302.34466 * 12 11 9 14 14 N 1.46850 * 109.52217 * 59.18043 * 13 12 11 15 15 C 1.46910 * 110.99972 * 174.16341 * 14 13 12 16 16 C 1.50697 * 109.47042 * 66.04289 * 15 14 13 17 17 C 1.38830 * 119.73459 * 90.00200 * 16 15 14 18 18 C 1.37752 * 120.66159 * 179.74162 * 17 16 15 19 19 C 1.39121 * 119.78016 * 0.25421 * 18 17 16 20 20 N 1.37689 * 133.50072 * 179.97438 * 19 18 17 21 21 H 0.97003 * 125.06319 * 0.02562 * 20 19 18 22 22 C 1.36834 * 109.87102 * 180.02562 * 20 19 18 23 23 C 1.34236 * 109.92883 * 359.97438 * 22 20 19 24 24 C 1.40662 * 119.33816 * 0.02562 * 19 18 17 25 25 C 1.36632 * 119.73767 * 270.27815 * 16 15 14 26 26 C 1.46851 * 111.19911 * 298.25537 * 14 13 12 27 27 H 0.97003 * 119.99942 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.52441 * 57.69299 * 11 9 7 29 29 H 1.09001 * 109.52310 * 297.49523 * 11 9 7 30 30 H 1.09002 * 109.50027 * 182.39980 * 12 11 9 31 31 H 1.09009 * 109.50087 * 62.28765 * 12 11 9 32 32 H 1.08998 * 109.46239 * 299.16512 * 13 12 11 33 33 H 1.08997 * 109.46577 * 179.19488 * 13 12 11 34 34 H 1.08998 * 109.46488 * 306.04574 * 15 14 13 35 35 H 1.08993 * 109.47345 * 186.04452 * 15 14 13 36 36 H 1.08002 * 119.67056 * 0.02562 * 17 16 15 37 37 H 1.08005 * 120.10718 * 180.23380 * 18 17 16 38 38 H 1.07997 * 125.03099 * 179.97438 * 22 20 19 39 39 H 1.07999 * 126.49756 * 180.02562 * 23 22 20 40 40 H 1.08001 * 120.11442 * 359.97438 * 25 16 15 41 41 H 1.09000 * 109.46414 * 181.76163 * 26 14 13 42 42 H 1.09007 * 109.46035 * 301.72915 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6255 -2.5583 0.8901 11 6 0.3700 -2.5807 -1.2503 12 6 -0.3457 -3.9342 -1.2731 13 6 0.6944 -5.0563 -1.2418 14 7 1.5111 -4.9347 -0.0274 15 6 2.4287 -6.0741 0.1063 16 6 3.4396 -6.0386 -1.0108 17 6 4.6339 -5.3524 -0.8370 18 6 5.5737 -5.3121 -1.8434 19 6 5.3236 -5.9602 -3.0488 20 7 6.0408 -6.1014 -4.2156 21 1 6.9205 -5.7261 -4.3779 22 6 5.3279 -6.8499 -5.1121 23 6 4.1531 -7.2125 -4.5734 24 6 4.1096 -6.6491 -3.2219 25 6 3.1711 -6.6773 -2.1884 26 6 2.2449 -3.6629 -0.0061 27 1 -0.4850 0.8401 0.0004 28 1 0.9909 -2.4819 -2.1407 29 1 -0.3679 -1.7788 -1.2288 30 1 -0.9415 -4.0155 -2.1823 31 1 -0.9963 -4.0166 -0.4024 32 1 1.3359 -4.9816 -2.1198 33 1 0.1877 -6.0214 -1.2435 34 1 1.8627 -7.0043 0.0547 35 1 2.9441 -6.0151 1.0648 36 1 4.8301 -4.8491 0.0981 37 1 6.5014 -4.7787 -1.6972 38 1 5.6610 -7.1102 -6.1059 39 1 3.3853 -7.8065 -5.0468 40 1 2.2381 -7.2057 -2.3178 41 1 2.8642 -3.6158 0.8896 42 1 2.8791 -3.5947 -0.8900 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600179809.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:12 Heat of formation + Delta-G solvation = 52.476348 kcal Electronic energy + Delta-G solvation = -22455.879669 eV Core-core repulsion = 19400.485446 eV Total energy + Delta-G solvation = -3055.394223 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.15467 -38.74917 -36.49690 -33.64924 -31.96047 -31.73570 -29.83615 -29.19826 -28.61546 -25.54612 -24.87599 -22.81395 -21.83955 -21.23729 -20.92583 -20.14937 -18.40491 -17.90460 -16.37066 -16.10251 -15.10570 -14.91733 -14.46865 -14.32288 -14.12503 -13.88664 -13.69709 -13.36435 -13.07497 -12.63904 -12.50755 -12.41209 -12.21693 -11.65589 -11.40972 -11.20707 -11.09455 -10.90242 -10.72215 -10.56787 -10.52207 -10.00542 -9.77151 -9.60957 -9.38463 -8.95268 -8.62286 -8.24267 -8.00212 -7.67984 -7.49381 -5.90981 -3.96543 1.26637 1.75671 2.75738 3.14318 3.34012 3.40633 3.43544 4.03117 4.47289 4.73532 4.79995 4.87417 5.18998 5.21087 5.38969 5.40031 5.48389 5.60004 5.76467 5.85630 5.89296 5.96708 6.06491 6.15824 6.21881 6.23699 6.40298 6.54072 6.57643 6.62323 6.77143 6.82518 6.83220 6.87865 6.92103 7.08665 7.28359 7.32370 7.49764 7.52342 7.77599 7.82619 7.92878 8.17569 8.26017 8.56630 9.07543 9.67130 11.14995 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.017783 B = 0.004834 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.129596 B = 5791.262045 C = 6453.664190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.888 3.112 4 H -0.283 1.283 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.511 4.511 8 H 0.052 0.948 9 C 0.054 3.946 10 H 0.033 0.967 11 C -0.109 4.109 12 C -0.118 4.118 13 C 0.060 3.940 14 N -0.527 5.527 15 C 0.094 3.906 16 C -0.135 4.135 17 C -0.076 4.076 18 C -0.134 4.134 19 C 0.092 3.908 20 N -0.599 5.599 21 H 0.412 0.588 22 C 0.042 3.958 23 C -0.204 4.204 24 C -0.112 4.112 25 C -0.062 4.062 26 C 0.066 3.934 27 H 0.258 0.742 28 H 0.028 0.972 29 H 0.089 0.911 30 H 0.044 0.956 31 H 0.059 0.941 32 H 0.030 0.970 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.126 0.874 37 H 0.117 0.883 38 H 0.166 0.834 39 H 0.143 0.857 40 H 0.118 0.882 41 H 0.055 0.945 42 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.073 -14.582 -7.287 18.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.716 3.284 4 H -0.209 1.209 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.550 4.550 8 H 0.070 0.930 9 C 0.035 3.965 10 H 0.051 0.949 11 C -0.148 4.148 12 C -0.155 4.155 13 C -0.068 4.068 14 N -0.249 5.249 15 C -0.034 4.034 16 C -0.138 4.138 17 C -0.096 4.096 18 C -0.155 4.155 19 C -0.014 4.014 20 N -0.203 5.203 21 H 0.249 0.751 22 C -0.084 4.084 23 C -0.230 4.230 24 C -0.116 4.116 25 C -0.082 4.082 26 C -0.061 4.061 27 H 0.068 0.932 28 H 0.047 0.953 29 H 0.107 0.893 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.143 0.857 37 H 0.135 0.865 38 H 0.184 0.816 39 H 0.161 0.839 40 H 0.136 0.864 41 H 0.074 0.926 42 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 8.683 -14.414 -6.905 18.189 hybrid contribution 1.515 1.200 -1.026 2.188 sum 10.198 -13.214 -7.931 18.480 Atomic orbital electron populations 1.69897 1.05800 1.26165 1.50921 1.24923 0.94796 0.98829 0.95283 0.86665 0.79919 0.83853 0.77949 1.20891 1.21268 1.20009 1.21151 0.92758 0.90732 1.50317 0.92969 1.18668 0.92662 0.90421 0.94718 0.94931 1.21634 0.99962 0.94691 0.98470 1.21678 0.97224 0.96630 1.00010 1.22067 0.95435 0.98326 0.91002 1.62438 1.22540 1.02444 1.37518 1.21229 0.91551 0.95248 0.95372 1.20248 0.96563 0.99637 0.97349 1.20795 0.92655 0.97693 0.98461 1.19988 1.00896 1.03091 0.91501 1.18257 0.93020 1.01656 0.88501 1.41760 1.18603 1.47769 1.12146 0.75142 1.21732 0.93446 0.97837 0.95358 1.21679 0.98805 1.08080 0.94411 1.19180 0.94806 1.02384 0.95246 1.20128 0.97601 0.98824 0.91601 1.22332 0.96508 0.88344 0.98887 0.93155 0.95336 0.89251 0.93721 0.92222 0.95175 0.92710 0.90862 0.90419 0.85659 0.86512 0.81632 0.83916 0.86440 0.92627 0.95482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.78 11.35 55.43 0.63 -25.15 16 2 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.51 -14.25 8.56 -34.44 -0.29 -14.55 16 8 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 9 C 0.05 1.39 2.26 -91.69 -0.21 1.18 16 10 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 11 C -0.11 -2.69 5.02 -26.60 -0.13 -2.82 16 12 C -0.12 -2.40 6.09 -26.65 -0.16 -2.56 16 13 C 0.06 1.10 4.78 -3.84 -0.02 1.08 16 14 N -0.53 -9.95 4.86 -236.11 -1.15 -11.10 16 15 C 0.09 1.45 5.54 -4.97 -0.03 1.42 16 16 C -0.13 -2.08 4.03 -104.99 -0.42 -2.51 16 17 C -0.08 -1.16 7.97 -39.54 -0.31 -1.47 16 18 C -0.13 -1.90 10.08 -39.43 -0.40 -2.30 16 19 C 0.09 1.30 7.28 -83.99 -0.61 0.69 16 20 N -0.60 -6.49 6.07 -10.65 -0.06 -6.56 16 21 H 0.41 3.16 8.96 -40.82 -0.37 2.79 16 22 C 0.04 0.42 11.82 -16.73 -0.20 0.22 16 23 C -0.20 -2.48 11.08 -37.67 -0.42 -2.90 16 24 C -0.11 -1.65 6.37 -105.14 -0.67 -2.32 16 25 C -0.06 -0.93 8.05 -39.64 -0.32 -1.25 16 26 C 0.07 1.43 3.75 -3.83 -0.01 1.42 16 27 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.09 2.44 6.15 -51.93 -0.32 2.12 16 30 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 32 H 0.03 0.58 6.53 -51.93 -0.34 0.24 16 33 H 0.05 0.88 8.06 -51.93 -0.42 0.46 16 34 H 0.07 1.01 8.00 -51.93 -0.42 0.59 16 35 H 0.08 1.13 8.08 -51.93 -0.42 0.71 16 36 H 0.13 1.81 8.01 -52.49 -0.42 1.39 16 37 H 0.12 1.40 8.06 -52.48 -0.42 0.97 16 38 H 0.17 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 40 H 0.12 1.61 8.00 -52.49 -0.42 1.19 16 41 H 0.06 1.18 8.12 -51.93 -0.42 0.76 16 42 H 0.03 0.61 6.46 -51.93 -0.34 0.27 16 LS Contribution 330.30 15.07 4.98 4.98 Total: -1.00 -31.14 330.30 -11.31 -42.44 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -6.38 Total: 3.81 kcal Atomic # 6 Polarization: -20.69 SS G_CDS: -4.30 Total: -25.00 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: -0.58 Total: -42.81 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.14 -11.31 -42.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600179809.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.920 kcal (2) G-P(sol) polarization free energy of solvation -31.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds