Wall clock time and date at job start Tue Mar 31 2020 06:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99925 * 2 1 4 4 H 1.48500 * 109.47528 * 270.00229 * 3 2 1 5 5 H 1.48505 * 109.47394 * 30.00733 * 3 2 1 6 6 H 1.48503 * 109.47091 * 150.00244 * 3 2 1 7 7 C 1.37876 * 119.99822 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99407 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00134 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.50784 * 299.92555 * 9 7 2 11 11 C 1.53125 * 109.50010 * 60.00440 * 9 7 2 12 12 C 1.53124 * 109.15713 * 177.59280 * 11 9 7 13 13 C 1.53029 * 109.28082 * 302.34466 * 12 11 9 14 14 N 1.46850 * 109.52217 * 59.18043 * 13 12 11 15 15 C 1.46910 * 110.99972 * 174.16341 * 14 13 12 16 16 C 1.50697 * 109.47042 * 66.04289 * 15 14 13 17 17 C 1.38830 * 119.73459 * 90.00200 * 16 15 14 18 18 C 1.37752 * 120.66159 * 179.74162 * 17 16 15 19 19 C 1.39121 * 119.78016 * 0.25421 * 18 17 16 20 20 N 1.37689 * 133.50072 * 179.97438 * 19 18 17 21 21 H 0.97003 * 125.06319 * 0.02562 * 20 19 18 22 22 C 1.36834 * 109.87102 * 180.02562 * 20 19 18 23 23 C 1.34236 * 109.92883 * 359.97438 * 22 20 19 24 24 C 1.40662 * 119.33816 * 0.02562 * 19 18 17 25 25 C 1.36632 * 119.73767 * 270.27815 * 16 15 14 26 26 C 1.46851 * 111.19911 * 298.25537 * 14 13 12 27 27 H 0.97003 * 119.99942 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.52441 * 57.69299 * 11 9 7 29 29 H 1.09001 * 109.52310 * 297.49523 * 11 9 7 30 30 H 1.09002 * 109.50027 * 182.39980 * 12 11 9 31 31 H 1.09009 * 109.50087 * 62.28765 * 12 11 9 32 32 H 1.08998 * 109.46239 * 299.16512 * 13 12 11 33 33 H 1.08997 * 109.46577 * 179.19488 * 13 12 11 34 34 H 1.08998 * 109.46488 * 306.04574 * 15 14 13 35 35 H 1.08993 * 109.47345 * 186.04452 * 15 14 13 36 36 H 1.08002 * 119.67056 * 0.02562 * 17 16 15 37 37 H 1.08005 * 120.10718 * 180.23380 * 18 17 16 38 38 H 1.07997 * 125.03099 * 179.97438 * 22 20 19 39 39 H 1.07999 * 126.49756 * 180.02562 * 23 22 20 40 40 H 1.08001 * 120.11442 * 359.97438 * 25 16 15 41 41 H 1.09000 * 109.46414 * 181.76163 * 26 14 13 42 42 H 1.09007 * 109.46035 * 301.72915 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6255 -2.5583 0.8901 11 6 0.3700 -2.5807 -1.2503 12 6 -0.3457 -3.9342 -1.2731 13 6 0.6944 -5.0563 -1.2418 14 7 1.5111 -4.9347 -0.0274 15 6 2.4287 -6.0741 0.1063 16 6 3.4396 -6.0386 -1.0108 17 6 4.6339 -5.3524 -0.8370 18 6 5.5737 -5.3121 -1.8434 19 6 5.3236 -5.9602 -3.0488 20 7 6.0408 -6.1014 -4.2156 21 1 6.9205 -5.7261 -4.3779 22 6 5.3279 -6.8499 -5.1121 23 6 4.1531 -7.2125 -4.5734 24 6 4.1096 -6.6491 -3.2219 25 6 3.1711 -6.6773 -2.1884 26 6 2.2449 -3.6629 -0.0061 27 1 -0.4850 0.8401 0.0004 28 1 0.9909 -2.4819 -2.1407 29 1 -0.3679 -1.7788 -1.2288 30 1 -0.9415 -4.0155 -2.1823 31 1 -0.9963 -4.0166 -0.4024 32 1 1.3359 -4.9816 -2.1198 33 1 0.1877 -6.0214 -1.2435 34 1 1.8627 -7.0043 0.0547 35 1 2.9441 -6.0151 1.0648 36 1 4.8301 -4.8491 0.0981 37 1 6.5014 -4.7787 -1.6972 38 1 5.6610 -7.1102 -6.1059 39 1 3.3853 -7.8065 -5.0468 40 1 2.2381 -7.2057 -2.3178 41 1 2.8642 -3.6158 0.8896 42 1 2.8791 -3.5947 -0.8900 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600179809.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:11 Heat of formation + Delta-G solvation = 34.229786 kcal Electronic energy + Delta-G solvation = -22456.670899 eV Core-core repulsion = 19400.485446 eV Total energy + Delta-G solvation = -3056.185454 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.11693 -40.17990 -37.80872 -35.43850 -33.61927 -32.82849 -31.64962 -30.46841 -29.60225 -26.94695 -26.84407 -24.08382 -23.27869 -22.85561 -21.97436 -21.28208 -20.12422 -18.87281 -18.41254 -17.17734 -16.73519 -16.38145 -15.90372 -15.71480 -15.34985 -15.15584 -14.96492 -14.76324 -14.32903 -14.24020 -14.03412 -13.83237 -13.48875 -13.24199 -12.86533 -12.84156 -12.58951 -12.50421 -12.27253 -12.22426 -11.85757 -11.69734 -11.61157 -11.35793 -10.85098 -10.64645 -10.61409 -10.35830 -9.17223 -8.97345 -8.58054 -8.06166 -6.19939 0.24592 0.66213 1.40332 1.40629 1.51154 1.87100 2.31397 2.43403 2.91630 3.20415 3.32682 3.78528 3.98966 4.08549 4.23227 4.28552 4.32640 4.36186 4.48322 4.54163 4.57057 4.71228 4.80173 4.87699 4.89891 4.97078 4.97412 5.04351 5.12144 5.16729 5.19879 5.23237 5.42206 5.48963 5.54406 5.64970 5.76769 5.81727 5.85804 6.00953 6.15515 6.24449 6.26630 6.41254 6.50246 6.75779 6.92610 7.47366 8.98522 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.017783 B = 0.004834 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.129596 B = 5791.262045 C = 6453.664190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.014 3.986 3 Si 0.952 3.048 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.533 4.533 8 H 0.049 0.951 9 C 0.051 3.949 10 H -0.003 1.003 11 C -0.101 4.101 12 C -0.112 4.112 13 C 0.067 3.933 14 N -0.536 5.536 15 C 0.097 3.903 16 C -0.146 4.146 17 C -0.099 4.099 18 C -0.139 4.139 19 C 0.073 3.927 20 N -0.591 5.591 21 H 0.428 0.572 22 C 0.063 3.937 23 C -0.233 4.233 24 C -0.135 4.135 25 C -0.072 4.072 26 C 0.087 3.913 27 H 0.260 0.740 28 H 0.014 0.986 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.024 0.976 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.123 0.877 37 H 0.133 0.867 38 H 0.212 0.788 39 H 0.159 0.841 40 H 0.127 0.873 41 H 0.053 0.947 42 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.356 -15.782 -8.879 20.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.184 4.184 3 Si 0.778 3.222 4 H -0.204 1.204 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.571 4.571 8 H 0.067 0.933 9 C 0.033 3.967 10 H 0.015 0.985 11 C -0.140 4.140 12 C -0.150 4.150 13 C -0.061 4.061 14 N -0.258 5.258 15 C -0.030 4.030 16 C -0.149 4.149 17 C -0.119 4.119 18 C -0.159 4.159 19 C -0.035 4.035 20 N -0.196 5.196 21 H 0.267 0.733 22 C -0.063 4.063 23 C -0.258 4.258 24 C -0.140 4.140 25 C -0.092 4.092 26 C -0.040 4.040 27 H 0.069 0.931 28 H 0.033 0.967 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.042 0.958 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.101 0.899 36 H 0.141 0.859 37 H 0.151 0.849 38 H 0.228 0.772 39 H 0.177 0.823 40 H 0.145 0.855 41 H 0.071 0.929 42 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 9.992 -15.628 -8.501 20.405 hybrid contribution 1.156 1.532 -0.600 2.011 sum 11.148 -14.096 -9.101 20.145 Atomic orbital electron populations 1.70040 1.07145 1.26967 1.51378 1.25704 0.95646 1.02225 0.94867 0.85653 0.78860 0.79619 0.78107 1.20366 1.20718 1.19223 1.21502 0.92843 0.92240 1.50551 0.93304 1.18607 0.93058 0.91552 0.93525 0.98512 1.21433 0.98979 0.96354 0.97210 1.21603 0.97617 0.94950 1.00797 1.22021 0.94718 0.98817 0.90524 1.62369 1.23284 1.02213 1.37909 1.21274 0.91418 0.94450 0.95865 1.20212 0.96701 1.00451 0.97545 1.20904 0.93381 0.98622 0.98985 1.20205 1.01304 1.02922 0.91506 1.18430 0.93661 1.01952 0.89461 1.41871 1.19152 1.47343 1.11208 0.73336 1.22458 0.92236 0.95254 0.96349 1.22002 1.00566 1.09571 0.93676 1.19627 0.95069 1.02805 0.96492 1.20287 0.98222 0.99011 0.91637 1.21914 0.95188 0.88675 0.98257 0.93117 0.96738 0.92449 0.91555 0.92876 0.95791 0.89394 0.88627 0.89880 0.85895 0.84868 0.77160 0.82342 0.85491 0.92855 0.96493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.59 11.35 21.45 0.24 -54.35 16 2 C 0.01 0.81 5.30 84.65 0.45 1.26 16 3 Si 0.95 44.81 29.54 68.60 2.03 46.84 16 4 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 6 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.53 -30.59 8.56 25.60 0.22 -30.37 16 8 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 9 C 0.05 2.73 2.26 -11.49 -0.03 2.70 16 10 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 11 C -0.10 -5.14 5.02 30.68 0.15 -4.98 16 12 C -0.11 -4.54 6.09 30.65 0.19 -4.35 16 13 C 0.07 2.37 4.78 86.32 0.41 2.79 16 14 N -0.54 -19.96 4.86 -900.92 -4.38 -24.33 16 15 C 0.10 2.89 5.54 85.55 0.47 3.37 16 16 C -0.15 -4.43 4.03 -20.10 -0.08 -4.51 16 17 C -0.10 -3.01 7.97 22.30 0.18 -2.84 16 18 C -0.14 -3.86 10.08 22.37 0.23 -3.64 16 19 C 0.07 1.95 7.28 39.03 0.28 2.24 16 20 N -0.59 -11.24 6.07 -187.62 -1.14 -12.38 16 21 H 0.43 5.31 8.96 -92.71 -0.83 4.48 16 22 C 0.06 1.04 11.82 83.00 0.98 2.03 16 23 C -0.23 -5.11 11.08 23.51 0.26 -4.85 16 24 C -0.14 -3.83 6.37 -20.20 -0.13 -3.96 16 25 C -0.07 -2.10 8.05 22.23 0.18 -1.92 16 26 C 0.09 3.86 3.75 86.33 0.32 4.18 16 27 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 28 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 3.25 6.15 -2.39 -0.01 3.24 16 30 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.05 2.21 8.14 -2.38 -0.02 2.19 16 32 H 0.02 0.89 6.53 -2.39 -0.02 0.88 16 33 H 0.09 2.57 8.06 -2.39 -0.02 2.55 16 34 H 0.10 2.41 8.00 -2.39 -0.02 2.39 16 35 H 0.08 2.36 8.08 -2.39 -0.02 2.34 16 36 H 0.12 3.63 8.01 -2.91 -0.02 3.61 16 37 H 0.13 3.08 8.06 -2.91 -0.02 3.05 16 38 H 0.21 1.45 8.06 -2.91 -0.02 1.43 16 39 H 0.16 2.80 8.06 -2.91 -0.02 2.78 16 40 H 0.13 3.28 8.00 -2.91 -0.02 3.26 16 41 H 0.05 2.33 8.12 -2.39 -0.02 2.31 16 42 H 0.02 0.78 6.46 -2.38 -0.02 0.77 16 Total: -1.00 -69.11 330.30 1.02 -68.08 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.18 Total: 18.98 kcal Atomic # 6 Polarization: -46.94 SS G_CDS: 4.09 Total: -42.85 kcal Atomic # 7 Polarization: -85.78 SS G_CDS: -5.27 Total: -91.06 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -69.11 1.02 -68.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600179809.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.315 kcal (2) G-P(sol) polarization free energy of solvation -69.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds