Wall clock time and date at job start Tue Mar 31 2020 06:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00458 * 2 1 4 4 H 1.48505 * 109.46921 * 269.99441 * 3 2 1 5 5 H 1.48498 * 109.47139 * 29.99333 * 3 2 1 6 6 H 1.48497 * 109.47432 * 149.99465 * 3 2 1 7 7 C 1.37878 * 119.99531 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00209 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00055 * 180.02562 * 7 2 1 10 10 H 1.08999 * 109.50226 * 60.07847 * 9 7 2 11 11 C 1.53120 * 109.49738 * 300.00131 * 9 7 2 12 12 C 1.53120 * 109.15808 * 182.36425 * 11 9 7 13 13 C 1.53034 * 109.27951 * 57.65367 * 12 11 9 14 14 N 1.46838 * 109.52406 * 300.82309 * 13 12 11 15 15 C 1.46903 * 111.00322 * 185.83594 * 14 13 12 16 16 C 1.50705 * 109.46844 * 66.04639 * 15 14 13 17 17 C 1.38838 * 119.73292 * 269.97784 * 16 15 14 18 18 C 1.37748 * 120.66146 * 179.97438 * 17 16 15 19 19 C 1.39125 * 119.78267 * 0.05167 * 18 17 16 20 20 N 1.37688 * 133.50712 * 179.97438 * 19 18 17 21 21 H 0.97000 * 125.06758 * 359.97281 * 20 19 18 22 22 C 1.36835 * 109.87251 * 179.97438 * 20 19 18 23 23 C 1.34239 * 109.93059 * 0.26493 * 22 20 19 24 24 C 1.40668 * 119.33261 * 359.97287 * 19 18 17 25 25 C 1.36626 * 119.73696 * 90.00141 * 16 15 14 26 26 C 1.46842 * 111.20173 * 61.73978 * 14 13 12 27 27 H 0.97001 * 119.99347 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.52365 * 62.46406 * 11 9 7 29 29 H 1.08998 * 109.52557 * 302.26907 * 11 9 7 30 30 H 1.09005 * 109.50496 * 297.71299 * 12 11 9 31 31 H 1.09001 * 109.50393 * 177.59822 * 12 11 9 32 32 H 1.09000 * 109.46494 * 180.80577 * 13 12 11 33 33 H 1.09005 * 109.45984 * 60.83992 * 13 12 11 34 34 H 1.09000 * 109.47233 * 306.05045 * 15 14 13 35 35 H 1.09000 * 109.47687 * 186.04594 * 15 14 13 36 36 H 1.07992 * 119.67010 * 0.02562 * 17 16 15 37 37 H 1.08008 * 120.10695 * 180.02562 * 18 17 16 38 38 H 1.08002 * 125.03193 * 179.97438 * 22 20 19 39 39 H 1.07993 * 126.50200 * 179.71624 * 23 22 20 40 40 H 1.07998 * 120.11870 * 359.97438 * 25 16 15 41 41 H 1.09000 * 109.46573 * 58.27173 * 26 14 13 42 42 H 1.09004 * 109.46762 * 178.24149 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4969 2.0462 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1295 0.0005 9 6 3.5115 -1.1943 0.0011 10 1 3.8751 -0.6816 0.8917 11 6 4.0231 -0.4729 -1.2488 12 6 5.5531 -0.5290 -1.2706 13 6 6.0056 -1.9905 -1.2377 14 7 5.4915 -2.6362 -0.0232 15 6 6.0200 -4.0002 0.1120 16 6 7.5086 -3.9418 0.3398 17 6 8.3728 -3.9623 -0.7467 18 6 9.7366 -3.9092 -0.5606 19 6 10.2558 -3.8354 0.7280 20 7 11.5355 -3.7716 1.2321 21 1 12.3453 -3.7692 0.6982 22 6 11.4947 -3.7120 2.5986 23 6 10.2205 -3.7402 3.0200 24 6 9.3760 -3.8155 1.8254 25 6 7.9969 -3.8696 1.6137 26 6 4.0232 -2.6365 -0.0029 27 1 -0.4849 0.8401 -0.0004 28 1 3.6971 0.5671 -1.2284 29 1 3.6280 -0.9620 -2.1392 30 1 5.9489 -0.0058 -0.4000 31 1 5.9218 -0.0542 -2.1798 32 1 7.0948 -2.0337 -1.2386 33 1 5.6210 -2.5096 -2.1157 34 1 5.8137 -4.5618 -0.7992 35 1 5.5420 -4.4929 0.9586 36 1 7.9717 -4.0195 -1.7477 37 1 10.4006 -3.9253 -1.4122 38 1 12.3598 -3.6557 3.2428 39 1 9.8822 -3.7111 4.0452 40 1 7.3186 -3.8540 2.4540 41 1 3.6478 -3.1525 -0.8866 42 1 3.6724 -3.1488 0.8930 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600179811.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:15 Heat of formation + Delta-G solvation = 59.907204 kcal Electronic energy + Delta-G solvation = -21949.914195 eV Core-core repulsion = 18894.842197 eV Total energy + Delta-G solvation = -3055.071997 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.23866 -38.73274 -36.93594 -33.75565 -32.20588 -31.83960 -30.27358 -29.71344 -28.76358 -25.68789 -24.87230 -22.90308 -22.28796 -21.29011 -20.92619 -20.11835 -18.78187 -18.07721 -16.66541 -16.23509 -15.56953 -15.16479 -14.58393 -14.45134 -14.09704 -13.93345 -13.79867 -13.51342 -13.30872 -13.03499 -12.81637 -12.64300 -12.29447 -12.13626 -11.54220 -11.45545 -11.26250 -10.99203 -10.94512 -10.75200 -10.39293 -10.00760 -9.89656 -9.75776 -9.62159 -9.03828 -8.86367 -8.46148 -8.16376 -7.76063 -7.66659 -6.02006 -4.00621 1.15043 1.62727 2.65265 3.02732 3.33172 3.44322 3.48744 3.87333 4.47823 4.62569 4.65409 4.76816 5.02764 5.06956 5.28954 5.30319 5.39165 5.50936 5.56974 5.61398 5.71506 5.79233 5.87783 5.93640 6.01604 6.08003 6.12448 6.23953 6.35815 6.38799 6.43763 6.56530 6.64735 6.68787 6.73236 6.83548 6.89492 6.92440 7.15755 7.27307 7.41076 7.50073 7.69490 7.72818 7.94158 8.57804 9.01473 9.61335 11.11326 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.029368 B = 0.003651 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.203506 B = 7667.695911 C = 7741.945102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.070 3.930 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.299 1.299 6 H -0.263 1.263 7 C -0.513 4.513 8 H 0.072 0.928 9 C 0.020 3.980 10 H 0.035 0.965 11 C -0.122 4.122 12 C -0.119 4.119 13 C 0.061 3.939 14 N -0.536 5.536 15 C 0.096 3.904 16 C -0.094 4.094 17 C -0.087 4.087 18 C -0.136 4.136 19 C 0.090 3.910 20 N -0.600 5.600 21 H 0.412 0.588 22 C 0.041 3.959 23 C -0.201 4.201 24 C -0.110 4.110 25 C -0.049 4.049 26 C 0.077 3.923 27 H 0.263 0.737 28 H 0.045 0.955 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.025 0.975 34 H 0.036 0.964 35 H 0.080 0.920 36 H 0.122 0.878 37 H 0.116 0.884 38 H 0.167 0.833 39 H 0.145 0.855 40 H 0.124 0.876 41 H 0.026 0.974 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.653 -8.407 0.924 25.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.131 4.131 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.227 1.227 6 H -0.188 1.188 7 C -0.551 4.551 8 H 0.090 0.910 9 C 0.001 3.999 10 H 0.053 0.947 11 C -0.159 4.159 12 C -0.157 4.157 13 C -0.067 4.067 14 N -0.260 5.260 15 C -0.032 4.032 16 C -0.096 4.096 17 C -0.107 4.107 18 C -0.157 4.157 19 C -0.016 4.016 20 N -0.204 5.204 21 H 0.248 0.752 22 C -0.085 4.085 23 C -0.227 4.227 24 C -0.115 4.115 25 C -0.068 4.068 26 C -0.050 4.050 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.044 0.956 34 H 0.054 0.946 35 H 0.098 0.902 36 H 0.140 0.860 37 H 0.134 0.866 38 H 0.184 0.816 39 H 0.163 0.837 40 H 0.142 0.858 41 H 0.044 0.956 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 23.749 -8.032 1.291 25.104 hybrid contribution 0.526 0.585 -1.029 1.295 sum 24.275 -7.447 0.262 25.393 Atomic orbital electron populations 1.69906 1.06307 1.26869 1.51137 1.24981 0.94656 0.99043 0.94457 0.86825 0.80042 0.83457 0.77820 1.20780 1.22696 1.18778 1.21020 0.88849 0.94451 1.50770 0.90968 1.19158 0.95824 0.91209 0.93715 0.94658 1.22019 0.92706 1.00111 1.01089 1.21648 0.97971 0.95424 1.00669 1.22056 0.99079 0.95235 0.90347 1.62014 1.09952 1.16039 1.38013 1.20970 0.90596 0.90778 1.00810 1.19298 0.95265 1.02290 0.92740 1.20744 0.91917 0.99451 0.98579 1.19915 0.95290 1.07388 0.93089 1.18255 0.84199 1.04467 0.94694 1.41756 1.06455 1.65785 1.06368 0.75181 1.21753 0.98904 1.04755 0.83039 1.21729 0.91508 1.11748 0.97668 1.19219 0.93116 1.06563 0.92577 1.20154 0.92552 0.97252 0.96824 1.22095 0.83542 0.99614 0.99717 0.92752 0.93672 0.92631 0.91916 0.92998 0.91389 0.95649 0.94590 0.90177 0.86044 0.86610 0.81585 0.83741 0.85828 0.95601 0.91460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 2 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 3 Si 0.89 22.54 24.35 -169.99 -4.14 18.40 16 4 H -0.28 -6.94 6.89 56.52 0.39 -6.55 16 5 H -0.30 -7.61 7.11 56.52 0.40 -7.20 16 6 H -0.26 -6.48 6.53 56.52 0.37 -6.11 16 7 C -0.51 -14.51 9.15 -34.44 -0.31 -14.83 16 8 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 9 C 0.02 0.48 1.85 -91.69 -0.17 0.31 16 10 H 0.04 0.90 7.21 -51.93 -0.37 0.52 16 11 C -0.12 -2.70 4.73 -26.61 -0.13 -2.82 16 12 C -0.12 -2.20 6.09 -26.65 -0.16 -2.37 16 13 C 0.06 1.02 5.15 -3.84 -0.02 1.00 16 14 N -0.54 -9.51 4.65 -236.12 -1.10 -10.60 16 15 C 0.10 1.41 5.10 -4.97 -0.03 1.39 16 16 C -0.09 -1.30 4.86 -104.98 -0.51 -1.81 16 17 C -0.09 -1.08 7.84 -39.54 -0.31 -1.39 16 18 C -0.14 -1.55 10.08 -39.43 -0.40 -1.95 16 19 C 0.09 1.08 7.28 -83.99 -0.61 0.47 16 20 N -0.60 -5.35 6.07 -10.65 -0.06 -5.41 16 21 H 0.41 2.34 8.96 -40.82 -0.37 1.98 16 22 C 0.04 0.35 11.82 -16.73 -0.20 0.15 16 23 C -0.20 -2.18 11.08 -37.67 -0.42 -2.59 16 24 C -0.11 -1.45 6.37 -105.14 -0.67 -2.12 16 25 C -0.05 -0.67 9.67 -39.64 -0.38 -1.06 16 26 C 0.08 1.58 4.68 -3.84 -0.02 1.56 16 27 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 28 H 0.05 1.06 3.34 -51.93 -0.17 0.89 16 29 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 1.04 5.74 -51.93 -0.30 0.74 16 33 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.04 0.50 8.06 -51.93 -0.42 0.09 16 35 H 0.08 1.13 7.92 -51.93 -0.41 0.72 16 36 H 0.12 1.35 7.94 -52.49 -0.42 0.93 16 37 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 38 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 40 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 41 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.07 1.37 8.01 -51.93 -0.42 0.95 16 LS Contribution 327.17 15.07 4.93 4.93 Total: -1.00 -32.50 327.17 -10.31 -42.80 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -6.28 Total: 1.22 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: -4.43 Total: -24.11 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: -0.39 Total: -43.24 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.14 Total: 18.40 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.50 -10.31 -42.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600179811.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.712 kcal (2) G-P(sol) polarization free energy of solvation -32.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds