Wall clock time and date at job start Tue Mar 31 2020 06:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00458 * 2 1 4 4 H 1.48505 * 109.46921 * 269.99441 * 3 2 1 5 5 H 1.48498 * 109.47139 * 29.99333 * 3 2 1 6 6 H 1.48497 * 109.47432 * 149.99465 * 3 2 1 7 7 C 1.37878 * 119.99531 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00209 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00055 * 180.02562 * 7 2 1 10 10 H 1.08999 * 109.50226 * 60.07847 * 9 7 2 11 11 C 1.53120 * 109.49738 * 300.00131 * 9 7 2 12 12 C 1.53120 * 109.15808 * 182.36425 * 11 9 7 13 13 C 1.53034 * 109.27951 * 57.65367 * 12 11 9 14 14 N 1.46838 * 109.52406 * 300.82309 * 13 12 11 15 15 C 1.46903 * 111.00322 * 185.83594 * 14 13 12 16 16 C 1.50705 * 109.46844 * 66.04639 * 15 14 13 17 17 C 1.38838 * 119.73292 * 269.97784 * 16 15 14 18 18 C 1.37748 * 120.66146 * 179.97438 * 17 16 15 19 19 C 1.39125 * 119.78267 * 0.05167 * 18 17 16 20 20 N 1.37688 * 133.50712 * 179.97438 * 19 18 17 21 21 H 0.97000 * 125.06758 * 359.97281 * 20 19 18 22 22 C 1.36835 * 109.87251 * 179.97438 * 20 19 18 23 23 C 1.34239 * 109.93059 * 0.26493 * 22 20 19 24 24 C 1.40668 * 119.33261 * 359.97287 * 19 18 17 25 25 C 1.36626 * 119.73696 * 90.00141 * 16 15 14 26 26 C 1.46842 * 111.20173 * 61.73978 * 14 13 12 27 27 H 0.97001 * 119.99347 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.52365 * 62.46406 * 11 9 7 29 29 H 1.08998 * 109.52557 * 302.26907 * 11 9 7 30 30 H 1.09005 * 109.50496 * 297.71299 * 12 11 9 31 31 H 1.09001 * 109.50393 * 177.59822 * 12 11 9 32 32 H 1.09000 * 109.46494 * 180.80577 * 13 12 11 33 33 H 1.09005 * 109.45984 * 60.83992 * 13 12 11 34 34 H 1.09000 * 109.47233 * 306.05045 * 15 14 13 35 35 H 1.09000 * 109.47687 * 186.04594 * 15 14 13 36 36 H 1.07992 * 119.67010 * 0.02562 * 17 16 15 37 37 H 1.08008 * 120.10695 * 180.02562 * 18 17 16 38 38 H 1.08002 * 125.03193 * 179.97438 * 22 20 19 39 39 H 1.07993 * 126.50200 * 179.71624 * 23 22 20 40 40 H 1.07998 * 120.11870 * 359.97438 * 25 16 15 41 41 H 1.09000 * 109.46573 * 58.27173 * 26 14 13 42 42 H 1.09004 * 109.46762 * 178.24149 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4969 2.0462 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1295 0.0005 9 6 3.5115 -1.1943 0.0011 10 1 3.8751 -0.6816 0.8917 11 6 4.0231 -0.4729 -1.2488 12 6 5.5531 -0.5290 -1.2706 13 6 6.0056 -1.9905 -1.2377 14 7 5.4915 -2.6362 -0.0232 15 6 6.0200 -4.0002 0.1120 16 6 7.5086 -3.9418 0.3398 17 6 8.3728 -3.9623 -0.7467 18 6 9.7366 -3.9092 -0.5606 19 6 10.2558 -3.8354 0.7280 20 7 11.5355 -3.7716 1.2321 21 1 12.3453 -3.7692 0.6982 22 6 11.4947 -3.7120 2.5986 23 6 10.2205 -3.7402 3.0200 24 6 9.3760 -3.8155 1.8254 25 6 7.9969 -3.8696 1.6137 26 6 4.0232 -2.6365 -0.0029 27 1 -0.4849 0.8401 -0.0004 28 1 3.6971 0.5671 -1.2284 29 1 3.6280 -0.9620 -2.1392 30 1 5.9489 -0.0058 -0.4000 31 1 5.9218 -0.0542 -2.1798 32 1 7.0948 -2.0337 -1.2386 33 1 5.6210 -2.5096 -2.1157 34 1 5.8137 -4.5618 -0.7992 35 1 5.5420 -4.4929 0.9586 36 1 7.9717 -4.0195 -1.7477 37 1 10.4006 -3.9253 -1.4122 38 1 12.3598 -3.6557 3.2428 39 1 9.8822 -3.7111 4.0452 40 1 7.3186 -3.8540 2.4540 41 1 3.6478 -3.1525 -0.8866 42 1 3.6724 -3.1488 0.8930 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600179811.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:14 Heat of formation + Delta-G solvation = 39.211791 kcal Electronic energy + Delta-G solvation = -21950.811615 eV Core-core repulsion = 18894.842197 eV Total energy + Delta-G solvation = -3055.969418 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 284.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.04368 -40.12486 -38.04225 -35.45340 -33.94182 -32.78702 -31.99268 -30.84653 -29.58447 -26.94899 -26.79073 -24.07265 -23.56927 -22.70645 -21.87701 -21.09577 -20.45916 -18.88515 -18.79608 -17.30067 -16.95536 -16.30685 -16.12650 -15.44638 -15.33781 -15.24093 -15.17211 -14.80986 -14.75699 -14.41444 -13.98753 -13.89986 -13.74331 -13.43127 -12.93447 -12.78043 -12.71677 -12.54726 -12.25489 -12.11076 -11.83498 -11.74521 -11.63391 -11.41693 -10.99594 -10.79874 -10.61830 -10.56406 -9.20581 -8.94387 -8.55426 -8.29668 -6.32621 0.29143 0.68297 1.29966 1.36763 1.48149 1.89954 2.33613 2.35151 2.84997 3.06291 3.34531 3.79855 3.96956 4.04929 4.11485 4.14707 4.29458 4.34474 4.36900 4.48430 4.53864 4.60724 4.67049 4.71297 4.82985 4.84456 4.89155 4.96827 5.00002 5.08373 5.14816 5.16585 5.23214 5.27405 5.46112 5.52171 5.65012 5.74798 5.80876 5.88180 5.89779 6.19924 6.27687 6.33018 6.38694 6.74758 6.80843 7.33044 8.87244 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.029368 B = 0.003651 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.203506 B = 7667.695911 C = 7741.945102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.014 3.986 3 Si 0.951 3.049 4 H -0.266 1.266 5 H -0.299 1.299 6 H -0.251 1.251 7 C -0.518 4.518 8 H 0.034 0.966 9 C 0.020 3.980 10 H 0.022 0.978 11 C -0.121 4.121 12 C -0.114 4.114 13 C 0.063 3.937 14 N -0.543 5.543 15 C 0.099 3.901 16 C -0.104 4.104 17 C -0.100 4.100 18 C -0.129 4.129 19 C 0.076 3.924 20 N -0.589 5.589 21 H 0.429 0.571 22 C 0.065 3.935 23 C -0.238 4.238 24 C -0.135 4.135 25 C -0.070 4.070 26 C 0.089 3.911 27 H 0.265 0.735 28 H 0.034 0.966 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.032 0.968 34 H 0.045 0.955 35 H 0.077 0.923 36 H 0.135 0.865 37 H 0.144 0.856 38 H 0.210 0.790 39 H 0.152 0.848 40 H 0.114 0.886 41 H 0.019 0.981 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.853 -7.980 0.158 28.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.183 4.183 3 Si 0.778 3.222 4 H -0.192 1.192 5 H -0.227 1.227 6 H -0.176 1.176 7 C -0.556 4.556 8 H 0.053 0.947 9 C 0.001 3.999 10 H 0.040 0.960 11 C -0.158 4.158 12 C -0.152 4.152 13 C -0.065 4.065 14 N -0.268 5.268 15 C -0.028 4.028 16 C -0.106 4.106 17 C -0.119 4.119 18 C -0.149 4.149 19 C -0.032 4.032 20 N -0.194 5.194 21 H 0.269 0.731 22 C -0.061 4.061 23 C -0.263 4.263 24 C -0.140 4.140 25 C -0.089 4.089 26 C -0.039 4.039 27 H 0.074 0.926 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.050 0.950 34 H 0.064 0.936 35 H 0.095 0.905 36 H 0.153 0.847 37 H 0.162 0.838 38 H 0.227 0.773 39 H 0.169 0.831 40 H 0.132 0.868 41 H 0.038 0.962 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 27.994 -7.625 0.509 29.018 hybrid contribution -0.725 0.337 -0.722 1.077 sum 27.269 -7.288 -0.213 28.226 Atomic orbital electron populations 1.70047 1.08118 1.27962 1.52969 1.25820 0.95384 1.02875 0.94246 0.85803 0.78962 0.78780 0.78635 1.19197 1.22684 1.17568 1.21341 0.91425 0.93025 1.49820 0.94737 1.19064 0.92883 0.93668 0.94268 0.96030 1.21911 0.95725 0.98760 0.99424 1.21626 0.94741 0.96866 1.01962 1.22093 1.00265 0.94077 0.90026 1.61950 1.07668 1.18199 1.38939 1.20963 0.91555 0.89094 1.01141 1.19207 0.94472 1.03551 0.93323 1.20884 0.92348 1.00075 0.98624 1.20213 0.95301 1.05599 0.93834 1.18456 0.85310 1.04727 0.94691 1.41836 1.06209 1.64522 1.06791 0.73118 1.22399 0.99410 1.01216 0.83092 1.22000 0.92394 1.14202 0.97717 1.19567 0.93209 1.06875 0.94357 1.20208 0.93280 0.98647 0.96791 1.21789 0.85846 0.97144 0.99118 0.92571 0.94816 0.93077 0.92449 0.89989 0.89203 0.94952 0.93648 0.90465 0.84719 0.83834 0.77338 0.83055 0.86754 0.96237 0.92241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.78 13.96 21.45 0.30 -60.48 16 2 C 0.01 0.81 5.45 84.65 0.46 1.27 16 3 Si 0.95 46.88 24.35 68.60 1.67 48.55 16 4 H -0.27 -12.41 6.89 99.48 0.69 -11.72 16 5 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 6 H -0.25 -11.82 6.53 99.48 0.65 -11.17 16 7 C -0.52 -30.38 9.15 25.60 0.23 -30.15 16 8 H 0.03 2.22 7.99 -2.91 -0.02 2.19 16 9 C 0.02 0.99 1.85 -11.49 -0.02 0.97 16 10 H 0.02 1.10 7.21 -2.39 -0.02 1.09 16 11 C -0.12 -5.21 4.73 30.67 0.15 -5.07 16 12 C -0.11 -3.92 6.09 30.65 0.19 -3.74 16 13 C 0.06 1.96 5.15 86.33 0.44 2.41 16 14 N -0.54 -18.87 4.65 -900.94 -4.19 -23.05 16 15 C 0.10 2.88 5.10 85.56 0.44 3.32 16 16 C -0.10 -2.77 4.86 -20.10 -0.10 -2.87 16 17 C -0.10 -2.24 7.84 22.30 0.17 -2.07 16 18 C -0.13 -2.56 10.08 22.37 0.23 -2.34 16 19 C 0.08 1.62 7.28 39.03 0.28 1.90 16 20 N -0.59 -8.39 6.07 -187.61 -1.14 -9.52 16 21 H 0.43 3.08 8.96 -92.71 -0.83 2.25 16 22 C 0.07 0.88 11.82 83.00 0.98 1.86 16 23 C -0.24 -4.77 11.08 23.51 0.26 -4.51 16 24 C -0.14 -3.43 6.37 -20.20 -0.13 -3.56 16 25 C -0.07 -1.94 9.67 22.23 0.22 -1.72 16 26 C 0.09 3.69 4.68 86.33 0.40 4.09 16 27 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 28 H 0.03 1.52 3.34 -2.39 -0.01 1.52 16 29 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 31 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.09 2.47 5.74 -2.39 -0.01 2.45 16 33 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.05 1.23 8.06 -2.39 -0.02 1.21 16 35 H 0.08 2.23 7.92 -2.39 -0.02 2.21 16 36 H 0.14 2.59 7.94 -2.91 -0.02 2.57 16 37 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 38 H 0.21 0.91 8.06 -2.91 -0.02 0.88 16 39 H 0.15 2.63 8.06 -2.91 -0.02 2.60 16 40 H 0.11 3.18 8.06 -2.91 -0.02 3.16 16 41 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.06 2.51 8.01 -2.38 -0.02 2.49 16 Total: -1.00 -72.47 327.17 0.96 -71.51 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 0.11 Total: 13.19 kcal Atomic # 6 Polarization: -44.40 SS G_CDS: 4.21 Total: -40.19 kcal Atomic # 7 Polarization: -88.04 SS G_CDS: -5.02 Total: -93.06 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 1.67 Total: 48.55 kcal Total: -72.47 0.96 -71.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600179811.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.722 kcal (2) G-P(sol) polarization free energy of solvation -72.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds