Wall clock time and date at job start Tue Mar 31 2020 05:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 120.00071 * 2 1 4 4 H 1.48494 * 109.47291 * 270.00608 * 3 2 1 5 5 H 1.48511 * 109.46712 * 30.00572 * 3 2 1 6 6 H 1.48500 * 109.46984 * 150.00167 * 3 2 1 7 7 C 1.37876 * 119.99949 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00002 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99841 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46767 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47119 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47257 * 180.02562 * 11 10 9 13 13 C 1.34778 * 119.99831 * 179.97438 * 12 11 10 14 14 O 1.21587 * 119.99959 * 5.07591 * 13 12 11 15 15 N 1.34778 * 119.99846 * 185.07116 * 13 12 11 16 16 C 1.46925 * 120.63084 * 354.97041 * 15 13 12 17 17 C 1.53192 * 108.77777 * 126.36535 * 16 15 13 18 18 C 1.53043 * 109.31061 * 54.63694 * 17 16 15 19 19 C 1.53042 * 109.53434 * 298.63005 * 18 17 16 20 20 H 1.08990 * 109.52970 * 301.40290 * 19 18 17 21 21 C 1.50699 * 109.49652 * 181.31720 * 19 18 17 22 22 O 1.20830 * 119.99916 * 0.16720 * 21 19 18 23 23 O 1.34229 * 120.00132 * 180.16478 * 21 19 18 24 24 C 1.46919 * 120.62953 * 174.94215 * 15 13 12 25 25 H 0.96993 * 120.00041 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46901 * 60.00306 * 9 7 2 27 27 H 1.08997 * 109.47241 * 299.99535 * 9 7 2 28 28 H 1.09005 * 109.47383 * 60.00031 * 10 9 7 29 29 H 1.08996 * 109.47374 * 300.00265 * 10 9 7 30 30 H 1.08998 * 109.47323 * 59.99691 * 11 10 9 31 31 H 1.09007 * 109.46859 * 300.00093 * 11 10 9 32 32 H 0.96997 * 119.99981 * 0.02562 * 12 11 10 33 33 H 1.09003 * 109.58817 * 246.15834 * 16 15 13 34 34 H 1.09005 * 109.58830 * 6.57875 * 16 15 13 35 35 H 1.08999 * 109.49642 * 174.58538 * 17 16 15 36 36 H 1.08994 * 109.49973 * 294.68506 * 17 16 15 37 37 H 1.09002 * 109.46068 * 178.61410 * 18 17 16 38 38 H 1.09001 * 109.45031 * 58.64510 * 18 17 16 39 39 H 0.96703 * 117.00066 * 179.97438 * 23 21 19 40 40 H 1.09000 * 109.59113 * 353.42215 * 24 15 13 41 41 H 1.09005 * 109.58407 * 113.70578 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9872 0.0001 12 7 2.4323 -6.1006 0.0007 13 6 1.9830 -7.3713 0.0019 14 8 0.7914 -7.5949 -0.0908 15 7 2.8545 -8.3941 0.1056 16 6 4.3027 -8.1464 0.1076 17 6 4.9142 -8.8057 1.3478 18 6 4.5299 -10.2869 1.3749 19 6 3.0075 -10.4191 1.4586 20 1 2.6466 -9.9138 2.3542 21 6 2.6319 -11.8774 1.5178 22 8 3.4933 -12.7244 1.4986 23 8 1.3403 -12.2352 1.5921 24 6 2.3745 -9.7780 0.2195 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 2.8720 -3.6044 0.8895 29 1 2.8720 -3.6043 -0.8904 30 1 0.8533 -5.0452 -0.8896 31 1 0.8539 -5.0446 0.8904 32 1 3.3859 -5.9234 0.0011 33 1 4.7479 -8.5742 -0.7908 34 1 4.4898 -7.0728 0.1348 35 1 5.9995 -8.7120 1.3118 36 1 4.5357 -8.3152 2.2445 37 1 4.9841 -10.7640 2.2434 38 1 4.8872 -10.7712 0.4661 39 1 1.1485 -13.1824 1.6276 40 1 1.2892 -9.7812 0.3206 41 1 2.6602 -10.3383 -0.6708 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602094278.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:31 Heat of formation + Delta-G solvation = -136.233446 kcal Electronic energy + Delta-G solvation = -22210.230446 eV Core-core repulsion = 18703.511138 eV Total energy + Delta-G solvation = -3506.719308 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.07912 -40.09601 -37.68150 -36.47525 -35.44504 -33.64372 -32.94568 -31.85050 -30.93422 -26.96691 -25.67200 -24.92597 -22.91810 -22.50822 -20.73801 -20.57608 -19.50299 -18.47152 -18.17659 -16.82533 -16.67226 -16.26114 -15.90954 -15.54400 -14.75309 -14.63051 -14.52210 -14.36987 -14.15685 -13.73914 -13.56298 -13.23347 -12.96770 -12.29132 -12.07643 -11.85508 -11.82933 -11.72113 -11.42271 -11.39683 -11.06329 -10.91995 -10.91036 -10.70173 -10.59842 -10.09067 -9.87093 -9.45353 -9.13200 -9.03677 -8.57106 -8.37644 -6.02294 -4.05460 1.75715 2.44547 2.77313 3.25298 3.30278 3.36724 3.39261 3.90327 4.16760 4.36429 4.42675 4.45343 4.56352 4.76375 4.95802 5.03608 5.19235 5.33497 5.33902 5.41479 5.43092 5.52717 5.65125 5.70606 5.80076 5.85770 6.11007 6.17052 6.24391 6.50574 6.61049 6.74542 6.96376 7.01017 7.49921 7.63307 7.76112 7.96583 8.00216 8.37302 8.66243 9.01282 9.58731 11.09025 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.038870 B = 0.002618 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.170094 B =10692.925567 C =11180.216235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.133 3.867 12 N -0.740 5.740 13 C 0.705 3.295 14 O -0.587 6.587 15 N -0.633 5.633 16 C 0.107 3.893 17 C -0.135 4.135 18 C -0.103 4.103 19 C -0.098 4.098 20 H 0.115 0.885 21 C 0.489 3.511 22 O -0.514 6.514 23 O -0.511 6.511 24 C 0.143 3.857 25 H 0.261 0.739 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.393 0.607 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.411 0.589 40 H 0.108 0.892 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.551 -23.107 2.614 25.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.010 3.990 12 N -0.397 5.397 13 C 0.407 3.593 14 O -0.465 6.465 15 N -0.372 5.372 16 C -0.016 4.016 17 C -0.173 4.173 18 C -0.141 4.141 19 C -0.118 4.118 20 H 0.133 0.867 21 C 0.330 3.670 22 O -0.402 6.402 23 O -0.323 6.323 24 C 0.019 3.981 25 H 0.071 0.929 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.229 0.771 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.270 0.730 40 H 0.126 0.874 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.804 -22.909 2.529 24.673 hybrid contribution 0.838 0.371 0.098 0.922 sum 9.642 -22.538 2.627 24.654 Atomic orbital electron populations 1.69966 1.06055 1.26697 1.50547 1.25032 0.94857 0.99301 0.95292 0.86583 0.79784 0.83453 0.78093 1.20661 1.21208 1.19913 1.21201 0.92973 0.90946 1.50941 0.92663 1.19027 0.93846 0.90774 0.97714 1.21890 0.99801 0.93331 1.00786 1.21545 0.91327 0.84134 1.01978 1.45572 1.10566 1.04379 1.79144 1.15884 0.84796 0.80768 0.77868 1.90923 1.14238 1.83691 1.57621 1.47199 1.05684 1.05600 1.78729 1.21705 0.80306 1.01129 0.98466 1.21954 1.01432 0.95103 0.98832 1.21436 0.91786 0.96831 1.04034 1.21510 0.98636 0.88671 1.02983 0.86689 1.23289 0.79958 0.92307 0.71402 1.90727 1.50637 1.53056 1.45811 1.84587 1.28630 1.34070 1.84972 1.21228 1.01310 0.80818 0.94765 0.92914 0.96215 0.96235 0.92803 0.92774 0.91794 0.91947 0.77069 0.90990 0.89782 0.89724 0.90849 0.90528 0.90619 0.73021 0.87390 0.91292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.30 5.27 -26.73 -0.14 -2.44 16 11 C 0.13 2.33 5.68 -4.04 -0.02 2.31 16 12 N -0.74 -10.59 5.47 -65.22 -0.36 -10.94 16 13 C 0.71 10.64 8.30 -86.92 -0.72 9.92 16 14 O -0.59 -11.28 15.79 5.29 0.08 -11.20 16 15 N -0.63 -6.90 2.97 -178.49 -0.53 -7.43 16 16 C 0.11 0.80 6.43 -3.71 -0.02 0.78 16 17 C -0.13 -0.83 6.08 -26.61 -0.16 -0.99 16 18 C -0.10 -0.72 4.46 -26.69 -0.12 -0.84 16 19 C -0.10 -0.79 2.78 -91.65 -0.25 -1.04 16 20 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 21 C 0.49 4.24 7.63 36.01 0.27 4.52 16 22 O -0.51 -5.71 16.74 -18.75 -0.31 -6.02 16 23 O -0.51 -3.62 13.35 -39.26 -0.52 -4.14 16 24 C 0.14 1.39 5.63 -3.71 -0.02 1.37 16 25 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.06 1.16 8.14 -51.92 -0.42 0.73 16 32 H 0.39 4.50 5.93 -40.82 -0.24 4.25 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.58 5.57 -51.93 -0.29 0.29 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.54 8.07 -51.93 -0.42 0.12 16 38 H 0.08 0.54 8.13 -51.93 -0.42 0.12 16 39 H 0.41 1.14 9.10 45.56 0.41 1.55 16 40 H 0.11 1.26 7.03 -51.93 -0.37 0.90 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 339.70 15.07 5.12 5.12 Total: -1.00 -35.08 339.70 -8.06 -43.15 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -5.51 Total: 0.34 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -1.74 Total: 0.80 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: -0.15 Total: -44.34 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.75 Total: -21.37 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -35.08 -8.06 -43.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602094278.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.088 kcal (2) G-P(sol) polarization free energy of solvation -35.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds