Wall clock time and date at job start Tue Mar 31 2020 05:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 120.00071 * 2 1 4 4 H 1.48494 * 109.47291 * 270.00608 * 3 2 1 5 5 H 1.48511 * 109.46712 * 30.00572 * 3 2 1 6 6 H 1.48500 * 109.46984 * 150.00167 * 3 2 1 7 7 C 1.37876 * 119.99949 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00002 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99841 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46767 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47119 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47257 * 180.02562 * 11 10 9 13 13 C 1.34778 * 119.99831 * 179.97438 * 12 11 10 14 14 O 1.21587 * 119.99959 * 5.07591 * 13 12 11 15 15 N 1.34778 * 119.99846 * 185.07116 * 13 12 11 16 16 C 1.46925 * 120.63084 * 354.97041 * 15 13 12 17 17 C 1.53192 * 108.77777 * 126.36535 * 16 15 13 18 18 C 1.53043 * 109.31061 * 54.63694 * 17 16 15 19 19 C 1.53042 * 109.53434 * 298.63005 * 18 17 16 20 20 H 1.08990 * 109.52970 * 301.40290 * 19 18 17 21 21 C 1.50699 * 109.49652 * 181.31720 * 19 18 17 22 22 O 1.20830 * 119.99916 * 0.16720 * 21 19 18 23 23 O 1.34229 * 120.00132 * 180.16478 * 21 19 18 24 24 C 1.46919 * 120.62953 * 174.94215 * 15 13 12 25 25 H 0.96993 * 120.00041 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46901 * 60.00306 * 9 7 2 27 27 H 1.08997 * 109.47241 * 299.99535 * 9 7 2 28 28 H 1.09005 * 109.47383 * 60.00031 * 10 9 7 29 29 H 1.08996 * 109.47374 * 300.00265 * 10 9 7 30 30 H 1.08998 * 109.47323 * 59.99691 * 11 10 9 31 31 H 1.09007 * 109.46859 * 300.00093 * 11 10 9 32 32 H 0.96997 * 119.99981 * 0.02562 * 12 11 10 33 33 H 1.09003 * 109.58817 * 246.15834 * 16 15 13 34 34 H 1.09005 * 109.58830 * 6.57875 * 16 15 13 35 35 H 1.08999 * 109.49642 * 174.58538 * 17 16 15 36 36 H 1.08994 * 109.49973 * 294.68506 * 17 16 15 37 37 H 1.09002 * 109.46068 * 178.61410 * 18 17 16 38 38 H 1.09001 * 109.45031 * 58.64510 * 18 17 16 39 39 H 0.96703 * 117.00066 * 179.97438 * 23 21 19 40 40 H 1.09000 * 109.59113 * 353.42215 * 24 15 13 41 41 H 1.09005 * 109.58407 * 113.70578 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9872 0.0001 12 7 2.4323 -6.1006 0.0007 13 6 1.9830 -7.3713 0.0019 14 8 0.7914 -7.5949 -0.0908 15 7 2.8545 -8.3941 0.1056 16 6 4.3027 -8.1464 0.1076 17 6 4.9142 -8.8057 1.3478 18 6 4.5299 -10.2869 1.3749 19 6 3.0075 -10.4191 1.4586 20 1 2.6466 -9.9138 2.3542 21 6 2.6319 -11.8774 1.5178 22 8 3.4933 -12.7244 1.4986 23 8 1.3403 -12.2352 1.5921 24 6 2.3745 -9.7780 0.2195 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 2.8720 -3.6044 0.8895 29 1 2.8720 -3.6043 -0.8904 30 1 0.8533 -5.0452 -0.8896 31 1 0.8539 -5.0446 0.8904 32 1 3.3859 -5.9234 0.0011 33 1 4.7479 -8.5742 -0.7908 34 1 4.4898 -7.0728 0.1348 35 1 5.9995 -8.7120 1.3118 36 1 4.5357 -8.3152 2.2445 37 1 4.9841 -10.7640 2.2434 38 1 4.8872 -10.7712 0.4661 39 1 1.1485 -13.1824 1.6276 40 1 1.2892 -9.7812 0.3206 41 1 2.6602 -10.3383 -0.6708 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602094278.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:30 Heat of formation + Delta-G solvation = -160.938261 kcal Electronic energy + Delta-G solvation = -22211.301727 eV Core-core repulsion = 18703.511138 eV Total energy + Delta-G solvation = -3507.790589 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 284.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.87194 -41.05320 -38.56192 -37.17593 -36.93075 -35.27385 -34.13810 -32.83762 -32.29678 -28.66217 -26.47508 -25.96210 -24.51526 -23.20630 -22.28206 -21.49673 -20.48389 -19.31817 -19.02606 -18.46901 -17.56180 -17.41428 -16.93965 -16.69807 -16.45416 -15.72611 -15.51351 -15.41239 -15.17794 -14.59156 -14.38412 -14.25049 -14.20488 -13.70963 -13.58567 -13.43508 -12.73654 -12.68850 -12.53998 -12.52431 -12.36053 -12.03359 -12.01308 -11.74220 -11.64656 -11.62218 -11.54145 -11.25411 -11.08917 -10.53389 -10.24448 -9.57234 -8.17559 -6.28897 1.04544 1.43317 1.44674 1.54231 1.56226 2.06165 2.13016 2.43527 2.92592 3.16401 3.53184 3.68144 3.84304 3.99305 4.09645 4.20004 4.25886 4.40687 4.48163 4.50357 4.58756 4.71454 4.73525 4.85843 4.96230 4.98599 5.06419 5.09872 5.19432 5.34166 5.45788 5.48084 5.56114 5.56577 5.73868 5.85576 5.87392 6.24603 6.88211 6.94116 6.94425 7.40683 7.51231 8.94664 Molecular weight = 284.16amu Principal moments of inertia in cm(-1) A = 0.038870 B = 0.002618 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.170094 B =10692.925567 C =11180.216235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.259 1.259 7 C -0.539 4.539 8 H 0.068 0.932 9 C 0.023 3.977 10 C -0.100 4.100 11 C 0.148 3.852 12 N -0.729 5.729 13 C 0.701 3.299 14 O -0.635 6.635 15 N -0.625 5.625 16 C 0.100 3.900 17 C -0.127 4.127 18 C -0.100 4.100 19 C -0.093 4.093 20 H 0.115 0.885 21 C 0.495 3.505 22 O -0.539 6.539 23 O -0.514 6.514 24 C 0.143 3.857 25 H 0.263 0.737 26 H -0.009 1.009 27 H -0.008 1.008 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.410 0.590 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.109 0.891 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.429 0.571 40 H 0.084 0.916 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.359 -23.351 2.757 26.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.202 4.202 3 Si 0.791 3.209 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.183 1.183 7 C -0.577 4.577 8 H 0.086 0.914 9 C -0.014 4.014 10 C -0.138 4.138 11 C 0.024 3.976 12 N -0.387 5.387 13 C 0.403 3.597 14 O -0.517 6.517 15 N -0.362 5.362 16 C -0.022 4.022 17 C -0.165 4.165 18 C -0.137 4.137 19 C -0.113 4.113 20 H 0.133 0.867 21 C 0.338 3.662 22 O -0.429 6.429 23 O -0.327 6.327 24 C 0.019 3.981 25 H 0.071 0.929 26 H 0.010 0.990 27 H 0.011 0.989 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.249 0.751 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.128 0.872 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.291 0.709 40 H 0.103 0.897 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 11.676 -23.197 2.678 26.108 hybrid contribution -0.082 0.352 0.051 0.365 sum 11.595 -22.845 2.729 25.764 Atomic orbital electron populations 1.70116 1.07972 1.27764 1.51802 1.26029 0.95729 1.03570 0.94856 0.85418 0.78717 0.78305 0.78420 1.19882 1.21168 1.18309 1.21689 0.93786 0.91959 1.50279 0.91414 1.18942 0.94463 0.92941 0.95087 1.21584 0.98423 0.91592 1.02159 1.21100 0.91376 0.84637 1.00510 1.45209 1.10878 1.03488 1.79106 1.16040 0.84612 0.81430 0.77662 1.90892 1.16615 1.84449 1.59726 1.47219 1.06783 1.04948 1.77241 1.22037 0.77908 1.02134 1.00141 1.21929 1.02764 0.94067 0.97749 1.21434 0.90535 0.97510 1.04242 1.21474 0.99580 0.88235 1.01981 0.86715 1.23305 0.80018 0.92231 0.70628 1.90720 1.51334 1.53706 1.47157 1.84561 1.27818 1.35940 1.84404 1.21247 1.00170 0.80441 0.96240 0.92852 0.99013 0.98914 0.91224 0.91354 0.93574 0.93410 0.75064 0.89114 0.88923 0.87235 0.91315 0.90297 0.90431 0.70900 0.89747 0.89981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.04 13.29 21.45 0.28 -56.75 16 2 C 0.00 -0.25 5.46 84.65 0.46 0.22 16 3 Si 0.97 43.37 29.54 68.60 2.03 45.39 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 7 C -0.54 -29.70 9.11 25.60 0.23 -29.47 16 8 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.02 1.20 4.97 29.85 0.15 1.35 16 10 C -0.10 -3.74 5.27 30.60 0.16 -3.58 16 11 C 0.15 5.23 5.68 86.38 0.49 5.72 16 12 N -0.73 -20.03 5.47 -478.52 -2.62 -22.65 16 13 C 0.70 20.82 8.30 179.05 1.49 22.31 16 14 O -0.64 -25.00 15.79 -3.99 -0.06 -25.07 16 15 N -0.62 -12.72 2.97 -836.89 -2.49 -15.21 16 16 C 0.10 1.20 6.43 86.36 0.56 1.75 16 17 C -0.13 -1.17 6.08 30.67 0.19 -0.98 16 18 C -0.10 -1.15 4.46 30.62 0.14 -1.01 16 19 C -0.09 -1.38 2.78 -11.46 -0.03 -1.41 16 20 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 21 C 0.50 8.07 7.63 71.24 0.54 8.61 16 22 O -0.54 -11.33 16.74 21.95 0.37 -10.96 16 23 O -0.51 -6.82 13.35 -51.41 -0.69 -7.50 16 24 C 0.14 2.66 5.63 86.37 0.49 3.15 16 25 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 26 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 27 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 28 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 29 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.41 8.36 5.93 -92.71 -0.55 7.81 16 33 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.09 0.97 5.57 -2.38 -0.01 0.95 16 35 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.08 0.92 8.07 -2.39 -0.02 0.90 16 38 H 0.08 0.90 8.13 -2.39 -0.02 0.88 16 39 H 0.43 1.90 9.10 -74.06 -0.67 1.23 16 40 H 0.08 2.01 7.03 -2.39 -0.02 2.00 16 41 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 Total: -1.00 -76.98 339.70 1.50 -75.48 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -0.18 Total: 10.62 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: 4.86 Total: 6.65 kcal Atomic # 7 Polarization: -89.80 SS G_CDS: -4.82 Total: -94.62 kcal Atomic # 8 Polarization: -43.15 SS G_CDS: -0.38 Total: -43.53 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Total: -76.98 1.50 -75.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602094278.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.458 kcal (2) G-P(sol) polarization free energy of solvation -76.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds